Wall clock time and date at job start Tue Mar 31 2020 14:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99792 * 2 1 4 4 H 1.48498 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47246 * 300.00389 * 3 2 1 6 6 H 1.48500 * 109.46913 * 59.99846 * 3 2 1 7 7 C 1.37876 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99840 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.46493 * 119.99999 * 270.00257 * 10 9 7 12 12 C 1.52994 * 109.47437 * 86.43404 * 11 10 9 13 13 C 1.53003 * 117.50059 * 243.74970 * 12 11 10 14 14 C 1.52999 * 117.50408 * 175.08584 * 12 11 10 15 15 C 1.34785 * 119.99981 * 89.99871 * 10 9 7 16 16 O 1.21608 * 119.99928 * 355.89987 * 15 10 9 17 17 C 1.47431 * 119.99914 * 175.90453 * 15 10 9 18 18 C 1.41287 * 126.41451 * 28.62863 * 17 15 10 19 19 N 1.30452 * 108.02203 * 179.97438 * 18 17 15 20 20 N 1.39932 * 108.89526 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.75512 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47271 * 304.98700 * 21 20 19 23 23 H 1.09001 * 109.46872 * 304.99220 * 22 21 20 24 24 O 1.42897 * 109.47408 * 64.99278 * 22 21 20 25 25 C 1.52996 * 109.47059 * 184.99730 * 22 21 20 26 26 O 1.42903 * 109.47335 * 174.99394 * 25 22 21 27 27 C 1.34264 * 108.49579 * 359.75607 * 20 19 18 28 28 H 0.96994 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46976 * 300.00311 * 9 7 2 30 30 H 1.08999 * 109.47397 * 60.00053 * 9 7 2 31 31 H 1.09004 * 109.46883 * 206.43443 * 11 10 9 32 32 H 1.08998 * 109.47141 * 326.42891 * 11 10 9 33 33 H 1.09006 * 115.54962 * 29.41968 * 12 11 10 34 34 H 1.08997 * 117.49494 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.50124 * 145.01962 * 13 12 11 36 36 H 1.08997 * 117.50295 * 214.97943 * 14 12 11 37 37 H 1.09013 * 117.49549 * 0.02562 * 14 12 11 38 38 H 1.07995 * 125.98992 * 359.97438 * 18 17 15 39 39 H 1.09005 * 109.46749 * 64.98488 * 21 20 19 40 40 H 1.08997 * 109.47317 * 184.98268 * 21 20 19 41 41 H 0.96696 * 113.99665 * 60.00186 * 24 22 21 42 42 H 1.09001 * 109.47379 * 294.99697 * 25 22 21 43 43 H 1.09005 * 109.47510 * 54.99824 * 25 22 21 44 44 H 0.96703 * 114.00361 * 179.97438 * 26 25 22 45 45 H 1.07993 * 126.29638 * 180.24129 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6792 -4.1693 -1.2692 12 6 3.8887 -3.3685 -1.7557 13 6 3.7451 -2.6013 -3.0717 14 6 4.6061 -3.8656 -3.0123 15 6 2.6411 -4.1248 1.1667 16 8 2.3048 -3.6155 2.2185 17 6 3.5281 -5.3025 1.1684 18 6 4.4397 -5.6673 0.1525 19 7 5.0374 -6.7663 0.5222 20 7 4.5445 -7.1511 1.7740 21 6 4.9625 -8.3330 2.5321 22 6 4.7932 -9.5817 1.6644 23 1 3.7659 -9.6373 1.3043 24 8 5.6853 -9.5122 0.5503 25 6 5.1106 -10.8268 2.4950 26 8 4.8406 -11.9973 1.7210 27 6 3.6282 -6.2515 2.1659 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5570 0.8897 30 1 0.6242 -2.5567 -0.8903 31 1 2.9674 -5.2104 -1.1237 32 1 1.8835 -4.1130 -2.0120 33 1 4.4987 -2.9165 -0.9736 34 1 2.7891 -2.6675 -3.5910 35 1 4.2609 -1.6448 -3.1555 36 1 5.6879 -3.7403 -3.0572 37 1 4.2161 -4.7631 -3.4928 38 1 4.6116 -5.1304 -0.7687 39 1 6.0090 -8.2292 2.8191 40 1 4.3478 -8.4266 3.4273 41 1 6.6189 -9.4604 0.7967 42 1 6.1624 -10.8146 2.7806 43 1 4.4907 -10.8332 3.3916 44 1 5.0201 -12.8262 2.1857 45 1 3.0700 -6.2686 3.0902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647287804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:41 Heat of formation + Delta-G solvation = -43.536223 kcal Electronic energy + Delta-G solvation = -27736.198190 eV Core-core repulsion = 23756.082724 eV Total energy + Delta-G solvation = -3980.115466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44457 -40.32791 -39.08394 -38.38479 -36.79920 -36.00311 -34.73588 -34.20116 -31.40528 -31.11241 -29.54995 -27.70953 -26.92826 -25.09851 -23.36016 -22.97836 -22.74959 -21.89166 -21.66057 -20.18717 -18.79657 -18.57757 -18.06111 -17.60070 -17.25761 -17.10709 -16.86719 -16.33946 -16.13598 -15.99255 -15.64501 -15.08671 -14.90970 -14.74400 -14.42807 -14.30048 -14.13949 -13.85322 -13.66996 -13.33606 -13.15480 -13.05862 -12.83262 -12.66596 -12.51951 -12.23006 -12.22557 -12.13022 -11.82165 -11.56813 -11.20918 -11.17822 -10.95010 -10.82119 -10.61366 -10.57511 -10.35628 -9.66635 -9.33983 -8.15750 -6.26803 0.61832 1.26403 1.36904 1.38851 1.39691 1.50791 2.34134 2.39516 2.51450 2.96396 3.03712 3.14130 3.45386 3.62133 3.82021 3.86727 3.95024 4.00856 4.06395 4.10627 4.19317 4.23576 4.25801 4.39262 4.50424 4.54593 4.56878 4.59965 4.73743 4.87127 4.91310 4.95243 5.09224 5.15323 5.27509 5.36028 5.38029 5.47205 5.65416 5.90572 5.91546 6.14651 6.58255 6.78112 6.84683 6.85132 6.91843 7.35450 7.54201 8.91997 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.002986 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.586411 B = 9376.152527 C =10167.195690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.265 3.735 10 N -0.593 5.593 11 C 0.136 3.864 12 C -0.182 4.182 13 C -0.174 4.174 14 C -0.150 4.150 15 C 0.577 3.423 16 O -0.601 6.601 17 C -0.307 4.307 18 C 0.062 3.938 19 N -0.284 5.284 20 N -0.353 5.353 21 C 0.095 3.905 22 C 0.098 3.902 23 H 0.081 0.919 24 O -0.559 6.559 25 C 0.051 3.949 26 O -0.594 6.594 27 C 0.122 3.878 28 H 0.264 0.736 29 H -0.002 1.002 30 H 0.022 0.978 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.207 0.793 39 H 0.118 0.882 40 H 0.144 0.856 41 H 0.384 0.616 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.400 0.600 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.979 -23.393 2.842 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.144 3.856 10 N -0.321 5.321 11 C 0.013 3.987 12 C -0.201 4.201 13 C -0.211 4.211 14 C -0.187 4.187 15 C 0.367 3.633 16 O -0.483 6.483 17 C -0.322 4.322 18 C -0.125 4.125 19 N -0.103 5.103 20 N -0.132 5.132 21 C -0.025 4.025 22 C 0.038 3.962 23 H 0.099 0.901 24 O -0.365 6.365 25 C -0.028 4.028 26 O -0.402 6.402 27 C -0.030 4.030 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.040 0.960 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.223 0.777 39 H 0.136 0.864 40 H 0.162 0.838 41 H 0.233 0.767 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.250 0.750 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 13.840 -23.639 2.348 27.493 hybrid contribution -0.196 1.773 1.086 2.089 sum 13.644 -21.866 3.434 26.001 Atomic orbital electron populations 1.70055 1.07383 1.27725 1.52051 1.25756 0.95691 1.02619 0.95023 0.85471 0.78801 0.79362 0.77806 1.19419 1.19607 1.20931 1.21606 0.93025 0.91474 1.49503 0.93048 1.18754 0.87574 0.83747 0.95503 1.47938 1.44336 1.34073 1.05786 1.21552 0.95234 0.97158 0.84771 1.22586 1.00309 1.04985 0.92222 1.22917 1.02022 0.96413 0.99776 1.23144 0.99201 0.98109 0.98250 1.17856 0.79568 0.82734 0.83188 1.90690 1.61199 1.63607 1.32834 1.20279 1.09342 1.02251 1.00365 1.24862 0.93947 0.93923 0.99781 1.77278 1.22105 1.14848 0.96100 1.48586 1.29542 1.20232 1.14804 1.22838 1.05052 0.80562 0.94086 1.22123 0.95167 0.91555 0.87395 0.90129 1.86729 1.20522 1.96419 1.32825 1.22827 1.01743 0.84751 0.93432 1.86507 1.90814 1.17311 1.45607 1.23173 0.91937 0.88826 0.99021 0.92658 0.98359 0.95975 0.87973 0.90706 0.89879 0.88951 0.89681 0.87275 0.86703 0.77690 0.86436 0.83804 0.76715 0.90484 0.90050 0.75007 0.77665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.52 -30.39 9.23 25.60 0.24 -30.15 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 9 C 0.27 14.79 5.17 85.63 0.44 15.23 16 10 N -0.59 -27.03 2.46 -830.05 -2.04 -29.07 16 11 C 0.14 4.74 5.22 86.38 0.45 5.19 16 12 C -0.18 -5.89 3.96 -10.79 -0.04 -5.94 16 13 C -0.17 -5.27 10.18 30.62 0.31 -4.96 16 14 C -0.15 -3.50 9.80 30.62 0.30 -3.20 16 15 C 0.58 26.38 7.62 86.66 0.66 27.04 16 16 O -0.60 -32.82 16.63 -4.05 -0.07 -32.89 16 17 C -0.31 -10.68 5.63 -20.15 -0.11 -10.80 16 18 C 0.06 1.88 9.55 85.65 0.82 2.69 16 19 N -0.28 -7.79 11.46 -56.28 -0.64 -8.43 16 20 N -0.35 -7.71 3.65 -346.30 -1.26 -8.98 16 21 C 0.09 0.99 6.16 86.38 0.53 1.52 16 22 C 0.10 1.31 3.46 30.59 0.11 1.42 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 O -0.56 -10.48 12.32 -144.35 -1.78 -12.26 16 25 C 0.05 0.35 6.68 71.98 0.48 0.83 16 26 O -0.59 -7.32 13.62 -144.35 -1.97 -9.29 16 27 C 0.12 3.23 11.36 84.28 0.96 4.19 16 28 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 29 H 0.00 -0.11 7.48 -2.39 -0.02 -0.12 16 30 H 0.02 1.26 7.93 -2.39 -0.02 1.24 16 31 H 0.10 3.11 4.67 -2.38 -0.01 3.10 16 32 H 0.07 2.55 7.68 -2.39 -0.02 2.53 16 33 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 34 H 0.09 2.80 8.03 -2.39 -0.02 2.78 16 35 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.21 5.84 3.91 -2.91 -0.01 5.83 16 39 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.14 0.51 8.06 -2.39 -0.02 0.49 16 41 H 0.38 4.30 9.04 -74.06 -0.67 3.63 16 42 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.40 1.00 9.12 -74.06 -0.68 0.33 16 45 H 0.21 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -87.77 378.99 -0.16 -87.93 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.31 Total: 17.79 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.60 Total: 3.94 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -3.66 Total: -103.55 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -3.81 Total: -54.43 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -87.77 -0.16 -87.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647287804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.398 kcal (2) G-P(sol) polarization free energy of solvation -87.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds