Wall clock time and date at job start Tue Mar 31 2020 14:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00236 * 2 1 4 4 H 1.48494 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46717 * 299.99377 * 3 2 1 6 6 H 1.48501 * 109.47476 * 59.99560 * 3 2 1 7 7 C 1.37880 * 119.99357 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99590 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00377 * 359.73250 * 7 2 1 10 10 H 1.09003 * 109.49762 * 300.26834 * 9 7 2 11 11 C 1.53039 * 109.49630 * 180.20422 * 9 7 2 12 12 C 1.53045 * 109.53675 * 178.68051 * 11 9 7 13 13 C 1.53189 * 109.30978 * 61.36741 * 12 11 9 14 14 N 1.46930 * 108.77899 * 305.36486 * 13 12 11 15 15 C 1.34771 * 120.62836 * 233.61349 * 14 13 12 16 16 O 1.21603 * 119.99782 * 173.61015 * 15 14 13 17 17 C 1.47428 * 120.00472 * 353.60913 * 15 14 13 18 18 C 1.41288 * 126.41717 * 151.17054 * 17 15 14 19 19 N 1.30449 * 108.02315 * 179.97438 * 18 17 15 20 20 N 1.39934 * 108.89755 * 0.02562 * 19 18 17 21 21 C 1.46499 * 125.75568 * 180.02562 * 20 19 18 22 22 C 1.53002 * 109.46846 * 304.96957 * 21 20 19 23 23 H 1.09001 * 109.46908 * 54.99965 * 22 21 20 24 24 O 1.42894 * 109.47233 * 295.00077 * 22 21 20 25 25 C 1.52999 * 109.47136 * 174.99767 * 22 21 20 26 26 O 1.42897 * 109.47076 * 184.99822 * 25 22 21 27 27 C 1.34262 * 108.49110 * 359.74376 * 20 19 18 28 28 C 1.46935 * 118.76340 * 53.58465 * 14 13 12 29 29 H 0.97001 * 119.99842 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46213 * 298.70479 * 11 9 7 31 31 H 1.08998 * 109.45805 * 58.67806 * 11 9 7 32 32 H 1.09004 * 109.49654 * 181.31940 * 12 11 9 33 33 H 1.08996 * 109.49866 * 301.38600 * 12 11 9 34 34 H 1.08998 * 109.58610 * 65.15160 * 13 12 11 35 35 H 1.09000 * 109.58756 * 185.57442 * 13 12 11 36 36 H 1.07994 * 125.98804 * 359.97212 * 18 17 15 37 37 H 1.08998 * 109.47503 * 64.96653 * 21 20 19 38 38 H 1.08997 * 109.47197 * 184.96766 * 21 20 19 39 39 H 0.96707 * 113.99980 * 300.00178 * 24 22 21 40 40 H 1.09001 * 109.47401 * 304.99892 * 25 22 21 41 41 H 1.09002 * 109.47095 * 65.00340 * 25 22 21 42 42 H 0.96703 * 114.00252 * 180.02562 * 26 25 22 43 43 H 1.08004 * 126.28919 * 180.24288 * 27 20 19 44 44 H 1.08991 * 109.61366 * 186.64334 * 28 14 13 45 45 H 1.08999 * 109.55767 * 66.21807 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3962 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0072 10 1 0.6241 -2.5528 0.8973 11 6 2.2449 -3.6629 0.0116 12 6 1.4808 -4.9884 0.0516 13 6 0.6044 -5.1058 -1.1993 14 7 -0.2542 -3.9169 -1.2886 15 6 -1.5907 -4.0425 -1.4087 16 8 -2.3005 -3.0561 -1.3649 17 6 -2.1922 -5.3758 -1.5934 18 6 -3.4840 -5.7770 -1.1853 19 7 -3.6454 -7.0257 -1.5266 20 7 -2.4817 -7.4766 -2.1595 21 6 -2.2640 -8.8240 -2.6918 22 6 -2.5116 -9.8545 -1.5883 23 1 -3.5079 -9.7077 -1.1711 24 8 -1.5351 -9.6928 -0.5578 25 6 -2.4066 -11.2640 -2.1739 26 8 -2.7517 -12.2229 -1.1722 27 6 -1.6006 -6.4644 -2.2021 28 6 0.3712 -2.5881 -1.2438 29 1 -0.4850 0.8401 -0.0004 30 1 2.8552 -3.6226 -0.8906 31 1 2.8878 -3.5880 0.8886 32 1 2.1896 -5.8161 0.0783 33 1 0.8519 -5.0191 0.9412 34 1 1.2374 -5.1667 -2.0846 35 1 -0.0154 -5.9997 -1.1287 36 1 -4.2104 -5.1584 -0.6794 37 1 -2.9520 -9.0039 -3.5179 38 1 -1.2376 -8.9125 -3.0480 39 1 -0.6233 -9.8097 -0.8580 40 1 -3.0896 -11.3587 -3.0181 41 1 -1.3854 -11.4423 -2.5110 42 1 -2.7065 -13.1406 -1.4739 43 1 -0.6102 -6.4968 -2.6316 44 1 -0.4019 -1.8210 -1.2021 45 1 0.9848 -2.4434 -2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647299742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:29 Heat of formation + Delta-G solvation = -82.746181 kcal Electronic energy + Delta-G solvation = -27885.360877 eV Core-core repulsion = 23903.545139 eV Total energy + Delta-G solvation = -3981.815737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.49918 -40.52948 -39.16822 -38.17722 -36.83717 -35.31619 -34.35260 -33.48775 -32.00220 -31.21901 -30.60876 -27.18138 -26.93386 -26.11131 -23.56014 -23.27688 -23.01140 -21.84828 -21.19304 -20.09108 -18.66213 -18.39741 -17.88235 -17.55625 -17.34512 -17.12033 -16.66299 -16.29386 -16.25477 -15.81427 -15.33114 -15.00770 -14.87259 -14.62479 -14.54578 -14.47100 -14.12713 -13.93697 -13.71186 -13.65860 -13.41881 -13.12590 -12.89655 -12.61720 -12.25572 -12.20442 -12.15791 -11.87103 -11.68259 -11.57388 -11.29332 -11.07633 -10.97543 -10.91093 -10.68097 -10.50829 -10.39111 -9.67919 -9.26135 -8.07655 -6.25554 0.57723 1.19693 1.37083 1.41204 1.42189 1.54497 2.22603 2.43478 2.53621 2.97100 3.20175 3.36080 3.58733 3.73993 3.91436 3.98001 4.07896 4.13188 4.16869 4.22370 4.25736 4.41304 4.43980 4.52532 4.57675 4.61739 4.62782 4.79662 4.84436 4.93167 4.98014 5.13497 5.30361 5.32270 5.36495 5.43895 5.59399 5.71871 5.89118 5.95440 6.05711 6.36510 6.49956 6.78426 6.84264 6.88931 6.92650 7.42865 7.46751 8.95720 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026202 B = 0.002785 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.354506 B =10050.673660 C =10786.289255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.006 3.994 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.036 3.964 10 H -0.021 1.021 11 C -0.104 4.104 12 C -0.127 4.127 13 C 0.094 3.906 14 N -0.605 5.605 15 C 0.574 3.426 16 O -0.602 6.602 17 C -0.305 4.305 18 C 0.086 3.914 19 N -0.313 5.313 20 N -0.344 5.344 21 C 0.094 3.906 22 C 0.095 3.905 23 H 0.079 0.921 24 O -0.572 6.572 25 C 0.051 3.949 26 O -0.595 6.595 27 C 0.121 3.879 28 C 0.127 3.873 29 H 0.258 0.742 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.183 0.817 37 H 0.120 0.880 38 H 0.155 0.845 39 H 0.390 0.610 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.400 0.600 43 H 0.230 0.770 44 H 0.072 0.928 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.140 -28.018 -10.759 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.017 3.983 10 H -0.003 1.003 11 C -0.141 4.141 12 C -0.165 4.165 13 C -0.027 4.027 14 N -0.336 5.336 15 C 0.364 3.636 16 O -0.484 6.484 17 C -0.320 4.320 18 C -0.101 4.101 19 N -0.134 5.134 20 N -0.123 5.123 21 C -0.026 4.026 22 C 0.035 3.965 23 H 0.098 0.902 24 O -0.380 6.380 25 C -0.028 4.028 26 O -0.404 6.404 27 C -0.030 4.030 28 C 0.005 3.995 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.200 0.800 37 H 0.138 0.862 38 H 0.172 0.828 39 H 0.240 0.760 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.250 0.750 43 H 0.246 0.754 44 H 0.091 0.909 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.743 -27.929 -10.083 29.703 hybrid contribution 0.828 1.878 -0.140 2.058 sum 0.085 -26.051 -10.223 27.985 Atomic orbital electron populations 1.70133 1.07519 1.27111 1.50767 1.25943 0.95529 1.03060 0.94747 0.85498 0.79339 0.79434 0.77341 1.18203 1.20793 1.21152 1.21559 0.93306 0.91435 1.50832 0.91791 1.18919 0.93141 0.93985 0.92250 1.00320 1.21508 0.97538 0.94046 1.01055 1.21918 0.98917 0.98331 0.97371 1.22403 0.93484 0.87530 0.99299 1.48314 1.05609 1.08786 1.70917 1.17987 0.81964 0.87904 0.75744 1.90745 1.62082 1.41510 1.54092 1.20229 0.98332 0.95386 1.18025 1.23969 0.95868 0.92411 0.97804 1.77084 1.06447 1.12318 1.17559 1.48551 1.09987 1.10865 1.42881 1.22898 1.07561 0.75592 0.96506 1.22169 0.93559 0.92600 0.88209 0.90248 1.86742 1.19615 1.94156 1.37453 1.22835 1.01970 0.87494 0.90454 1.86515 1.92402 1.20542 1.40979 1.23676 0.96777 0.85755 0.96830 1.21672 0.97053 0.82787 0.97993 0.93240 0.91723 0.93341 0.87384 0.94343 0.88568 0.87340 0.80034 0.86179 0.82770 0.76017 0.90384 0.89677 0.74990 0.75364 0.90928 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.39 11.40 21.45 0.24 -57.14 16 2 C 0.01 0.36 5.31 84.65 0.45 0.81 16 3 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.53 -29.68 8.56 25.60 0.22 -29.46 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.04 1.87 2.25 -11.46 -0.03 1.84 16 10 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 11 C -0.10 -3.97 5.11 30.62 0.16 -3.81 16 12 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 13 C 0.09 2.51 5.20 86.36 0.45 2.96 16 14 N -0.61 -24.51 2.97 -822.78 -2.45 -26.96 16 15 C 0.57 24.98 7.62 86.66 0.66 25.64 16 16 O -0.60 -33.26 16.45 -4.04 -0.07 -33.33 16 17 C -0.30 -9.91 5.57 -20.15 -0.11 -10.02 16 18 C 0.09 2.79 11.94 85.65 1.02 3.82 16 19 N -0.31 -8.76 12.24 -56.28 -0.69 -9.45 16 20 N -0.34 -6.54 3.60 -346.30 -1.25 -7.79 16 21 C 0.09 0.70 6.13 86.38 0.53 1.23 16 22 C 0.09 1.15 3.36 30.59 0.10 1.25 16 23 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 24 O -0.57 -9.31 13.25 -144.33 -1.91 -11.22 16 25 C 0.05 0.28 6.68 71.98 0.48 0.76 16 26 O -0.60 -7.02 13.62 -144.33 -1.97 -8.98 16 27 C 0.12 2.48 9.03 84.28 0.76 3.24 16 28 C 0.13 6.43 5.42 86.36 0.47 6.90 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.11 2.24 4.20 -2.39 -0.01 2.23 16 36 H 0.18 5.89 8.06 -2.91 -0.02 5.87 16 37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.15 -0.34 8.06 -2.39 -0.02 -0.36 16 39 H 0.39 2.31 9.05 -74.05 -0.67 1.64 16 40 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.40 0.74 9.12 -74.06 -0.68 0.07 16 43 H 0.23 2.50 6.40 -2.91 -0.02 2.48 16 44 H 0.07 4.46 5.13 -2.39 -0.01 4.45 16 45 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -93.97 368.15 -1.02 -94.99 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.31 Total: 11.29 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.35 Total: 1.62 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -4.14 Total: -101.34 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -3.95 Total: -53.53 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -93.97 -1.02 -94.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.245 kcal (2) G-P(sol) polarization free energy of solvation -93.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds