Wall clock time and date at job start Tue Mar 31 2020 14:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47091 * 240.00372 * 3 2 1 5 5 H 1.48502 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47064 * 120.00272 * 3 2 1 7 7 C 1.37879 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00078 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.52575 * 60.08035 * 9 7 2 11 11 C 1.53040 * 109.49634 * 180.16540 * 9 7 2 12 12 C 1.53043 * 109.53791 * 181.31699 * 11 9 7 13 13 C 1.53621 * 109.24043 * 298.51235 * 12 11 9 14 14 N 1.46915 * 108.54705 * 54.85250 * 13 12 11 15 15 C 1.34780 * 120.63142 * 126.36626 * 14 13 12 16 16 O 1.21602 * 120.00016 * 186.10559 * 15 14 13 17 17 C 1.47431 * 119.99934 * 6.11244 * 15 14 13 18 18 C 1.41290 * 126.41608 * 209.13866 * 17 15 14 19 19 N 1.30449 * 108.01986 * 179.97438 * 18 17 15 20 20 N 1.39929 * 108.89994 * 359.97438 * 19 18 17 21 21 C 1.46500 * 125.75025 * 179.97438 * 20 19 18 22 22 C 1.52991 * 109.47658 * 305.02798 * 21 20 19 23 23 H 1.09002 * 109.47514 * 305.00169 * 22 21 20 24 24 O 1.42904 * 109.47005 * 64.99895 * 22 21 20 25 25 C 1.52997 * 109.47365 * 184.99916 * 22 21 20 26 26 O 1.42898 * 109.47272 * 174.99800 * 25 22 21 27 27 C 1.34260 * 108.49341 * 0.26747 * 20 19 18 28 28 C 1.46922 * 118.74154 * 306.09834 * 14 13 12 29 29 H 0.97004 * 120.00432 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45742 * 301.33165 * 11 9 7 31 31 H 1.08990 * 109.46256 * 61.29506 * 11 9 7 32 32 H 1.09004 * 109.49852 * 58.58415 * 12 11 9 33 33 H 1.08998 * 109.49830 * 178.64885 * 12 11 9 34 34 H 1.09004 * 109.74051 * 295.11457 * 13 12 11 35 35 H 1.09000 * 109.66495 * 174.55370 * 13 12 11 36 36 H 1.08001 * 125.98542 * 359.96151 * 18 17 15 37 37 H 1.09005 * 109.46739 * 185.02332 * 21 20 19 38 38 H 1.08998 * 109.46615 * 65.03254 * 21 20 19 39 39 H 0.96692 * 113.99962 * 60.00194 * 24 22 21 40 40 H 1.08993 * 109.47296 * 295.00237 * 25 22 21 41 41 H 1.08999 * 109.47199 * 55.00235 * 25 22 21 42 42 H 0.96702 * 114.00344 * 179.97438 * 26 25 22 43 43 H 1.07992 * 126.29090 * 179.73858 * 27 20 19 44 44 H 1.09005 * 109.58956 * 173.64794 * 28 14 13 45 45 H 1.08997 * 109.58716 * 293.93003 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5582 -0.8907 11 6 2.2451 -3.6628 0.0030 12 6 1.4812 -4.9885 -0.0302 13 6 0.6038 -5.0988 1.2260 14 7 -0.2554 -3.9095 1.3017 15 6 -1.5921 -4.0344 1.4215 16 8 -2.3018 -3.0483 1.3716 17 6 -2.1936 -5.3667 1.6133 18 6 -3.4828 -5.7721 1.2010 19 7 -3.6448 -7.0185 1.5502 20 7 -2.4841 -7.4637 2.1926 21 6 -2.2681 -8.8071 2.7355 22 6 -3.3921 -9.1479 3.7159 23 1 -3.4535 -8.3745 4.4815 24 8 -4.6332 -9.2201 3.0112 25 6 -3.1013 -10.4971 4.3762 26 8 -4.0884 -10.7611 5.3752 27 6 -1.6044 -6.4503 2.2331 28 6 0.3706 -2.5812 1.2504 29 1 -0.4851 0.8400 -0.0004 30 1 2.8891 -3.5928 -0.8736 31 1 2.8543 -3.6172 0.9055 32 1 0.8528 -5.0242 -0.9201 33 1 2.1900 -5.8163 -0.0519 34 1 1.2354 -5.1503 2.1129 35 1 -0.0154 -5.9936 1.1635 36 1 -4.2072 -5.1576 0.6870 37 1 -1.3104 -8.8392 3.2552 38 1 -2.2640 -9.5317 1.9213 39 1 -4.6508 -9.8890 2.3132 40 1 -3.1279 -11.2838 3.6223 41 1 -2.1147 -10.4702 4.8386 42 1 -3.9665 -11.6026 5.8359 43 1 -0.6165 -6.4785 2.6684 44 1 -0.4027 -1.8143 1.2040 45 1 0.9816 -2.4306 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647299743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:32 Heat of formation + Delta-G solvation = -47.918408 kcal Electronic energy + Delta-G solvation = -27697.852392 eV Core-core repulsion = 23717.546900 eV Total energy + Delta-G solvation = -3980.305492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40047 -39.06139 -38.49383 -36.52344 -36.27611 -33.54666 -33.39304 -31.78339 -30.60168 -30.18631 -29.27815 -26.35639 -25.05800 -24.70217 -22.54728 -21.95346 -21.81072 -20.85457 -19.73795 -18.70126 -17.88005 -17.21140 -16.90767 -16.46625 -16.21279 -15.88357 -15.44760 -14.96732 -14.51598 -14.40901 -14.23609 -14.16874 -13.74363 -13.59757 -13.24237 -13.16530 -12.84400 -12.62806 -12.52049 -12.39694 -12.04424 -11.81808 -11.48246 -10.96316 -10.92765 -10.77223 -10.69489 -10.50564 -10.46539 -10.36015 -10.19761 -9.85243 -9.44636 -9.26667 -9.08194 -8.86281 -8.47663 -8.38961 -7.64532 -5.94813 -4.04373 1.61454 2.19857 2.50922 3.34230 3.39045 3.40539 3.41563 3.74436 3.89232 4.00392 4.30605 4.36022 4.44696 4.46299 4.55973 4.64428 4.70742 4.83319 4.94189 5.30087 5.33516 5.35546 5.43253 5.50119 5.59918 5.68341 5.77745 5.97463 6.18937 6.32431 6.56096 6.62869 6.70978 6.75250 6.89167 7.01016 7.04852 7.21308 7.32468 7.37527 7.63689 7.70305 7.92936 8.05571 8.35713 8.43663 8.97791 9.04561 9.61056 11.10123 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002594 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.356633 B =10790.241694 C =11269.681389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.098 3.902 14 N -0.603 5.603 15 C 0.580 3.420 16 O -0.535 6.535 17 C -0.264 4.264 18 C 0.095 3.905 19 N -0.277 5.277 20 N -0.365 5.365 21 C 0.103 3.897 22 C 0.098 3.902 23 H 0.109 0.891 24 O -0.528 6.528 25 C 0.047 3.953 26 O -0.561 6.561 27 C 0.078 3.922 28 C 0.114 3.886 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.191 0.809 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.371 0.629 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.381 0.619 43 H 0.185 0.815 44 H 0.123 0.877 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 -24.739 7.437 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.026 4.026 14 N -0.336 5.336 15 C 0.367 3.633 16 O -0.412 6.412 17 C -0.279 4.279 18 C -0.093 4.093 19 N -0.096 5.096 20 N -0.146 5.146 21 C -0.020 4.020 22 C 0.037 3.963 23 H 0.127 0.873 24 O -0.332 6.332 25 C -0.032 4.032 26 O -0.366 6.366 27 C -0.070 4.070 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.208 0.792 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.218 0.782 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.228 0.772 43 H 0.202 0.798 44 H 0.141 0.859 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.364 -24.138 7.671 25.550 hybrid contribution 1.754 0.495 -0.141 1.828 sum -1.610 -23.643 7.530 24.866 Atomic orbital electron populations 1.69882 1.05681 1.26945 1.49047 1.25057 0.94873 0.99194 0.94900 0.86670 0.79574 0.83303 0.78509 1.20332 1.21260 1.20300 1.21030 0.92803 0.90176 1.52136 0.92497 1.18953 0.92585 0.92156 0.94173 0.95285 1.21625 0.98550 0.94180 1.00443 1.22012 0.98492 0.98948 0.97645 1.22071 0.93454 0.88823 0.98221 1.48322 1.05089 1.08670 1.71515 1.17334 0.82081 0.86799 0.77121 1.90797 1.60603 1.38833 1.50988 1.20646 0.97463 0.96145 1.13693 1.24073 0.95571 0.92163 0.97520 1.77340 1.03630 1.13122 1.15491 1.48234 1.11794 1.09764 1.44780 1.22338 1.00304 0.81272 0.98067 1.22149 0.84465 0.96668 0.93028 0.87277 1.86792 1.32818 1.61697 1.51863 1.22819 0.91802 0.97088 0.91527 1.86574 1.52532 1.43872 1.53617 1.23296 0.96061 0.87538 1.00144 1.22265 0.98686 0.81289 0.98334 0.92559 0.93120 0.93266 0.92117 0.92513 0.92306 0.90451 0.79176 0.87446 0.88918 0.78232 0.92887 0.92455 0.77187 0.79848 0.85882 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 11.39 55.43 0.63 -25.26 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.19 8.56 -34.44 -0.29 -14.48 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.17 5.10 -26.69 -0.14 -2.31 16 12 C -0.13 -2.11 6.10 -26.39 -0.16 -2.27 16 13 C 0.10 1.47 5.23 -3.49 -0.02 1.45 16 14 N -0.60 -12.13 2.97 -173.78 -0.52 -12.65 16 15 C 0.58 12.13 7.62 -12.52 -0.10 12.03 16 16 O -0.54 -13.67 16.45 5.28 0.09 -13.59 16 17 C -0.26 -4.33 5.56 -105.06 -0.58 -4.92 16 18 C 0.09 1.49 11.95 -16.98 -0.20 1.28 16 19 N -0.28 -3.95 11.45 30.86 0.35 -3.59 16 20 N -0.37 -4.07 3.65 -60.81 -0.22 -4.30 16 21 C 0.10 0.63 6.16 -4.05 -0.02 0.61 16 22 C 0.10 0.74 3.46 -26.74 -0.09 0.64 16 23 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 24 O -0.53 -5.36 12.32 -40.08 -0.49 -5.86 16 25 C 0.05 0.22 6.68 37.16 0.25 0.47 16 26 O -0.56 -3.94 13.62 -40.08 -0.55 -4.48 16 27 C 0.08 0.95 9.03 -16.56 -0.15 0.80 16 28 C 0.11 2.78 5.41 -3.71 -0.02 2.76 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.96 4.19 -51.93 -0.22 0.75 16 36 H 0.19 2.80 8.06 -52.49 -0.42 2.38 16 37 H 0.11 0.33 8.06 -51.93 -0.42 -0.09 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.37 2.39 9.04 45.56 0.41 2.80 16 40 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 41 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.38 0.82 9.12 45.56 0.42 1.23 16 43 H 0.18 1.65 6.41 -52.49 -0.34 1.31 16 44 H 0.12 3.52 5.11 -51.93 -0.27 3.26 16 45 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -37.76 366.74 -7.06 -44.82 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.02 Total: 4.53 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.83 Total: -1.48 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.25 Total: -45.80 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.95 Total: -23.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.76 -7.06 -44.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.101 kcal (2) G-P(sol) polarization free energy of solvation -37.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds