Wall clock time and date at job start Tue Mar 31 2020 14:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48501 * 109.47091 * 240.00372 * 3 2 1 5 5 H 1.48502 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47064 * 120.00272 * 3 2 1 7 7 C 1.37879 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00078 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.52575 * 60.08035 * 9 7 2 11 11 C 1.53040 * 109.49634 * 180.16540 * 9 7 2 12 12 C 1.53043 * 109.53791 * 181.31699 * 11 9 7 13 13 C 1.53621 * 109.24043 * 298.51235 * 12 11 9 14 14 N 1.46915 * 108.54705 * 54.85250 * 13 12 11 15 15 C 1.34780 * 120.63142 * 126.36626 * 14 13 12 16 16 O 1.21602 * 120.00016 * 186.10559 * 15 14 13 17 17 C 1.47431 * 119.99934 * 6.11244 * 15 14 13 18 18 C 1.41290 * 126.41608 * 209.13866 * 17 15 14 19 19 N 1.30449 * 108.01986 * 179.97438 * 18 17 15 20 20 N 1.39929 * 108.89994 * 359.97438 * 19 18 17 21 21 C 1.46500 * 125.75025 * 179.97438 * 20 19 18 22 22 C 1.52991 * 109.47658 * 305.02798 * 21 20 19 23 23 H 1.09002 * 109.47514 * 305.00169 * 22 21 20 24 24 O 1.42904 * 109.47005 * 64.99895 * 22 21 20 25 25 C 1.52997 * 109.47365 * 184.99916 * 22 21 20 26 26 O 1.42898 * 109.47272 * 174.99800 * 25 22 21 27 27 C 1.34260 * 108.49341 * 0.26747 * 20 19 18 28 28 C 1.46922 * 118.74154 * 306.09834 * 14 13 12 29 29 H 0.97004 * 120.00432 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.45742 * 301.33165 * 11 9 7 31 31 H 1.08990 * 109.46256 * 61.29506 * 11 9 7 32 32 H 1.09004 * 109.49852 * 58.58415 * 12 11 9 33 33 H 1.08998 * 109.49830 * 178.64885 * 12 11 9 34 34 H 1.09004 * 109.74051 * 295.11457 * 13 12 11 35 35 H 1.09000 * 109.66495 * 174.55370 * 13 12 11 36 36 H 1.08001 * 125.98542 * 359.96151 * 18 17 15 37 37 H 1.09005 * 109.46739 * 185.02332 * 21 20 19 38 38 H 1.08998 * 109.46615 * 65.03254 * 21 20 19 39 39 H 0.96692 * 113.99962 * 60.00194 * 24 22 21 40 40 H 1.08993 * 109.47296 * 295.00237 * 25 22 21 41 41 H 1.08999 * 109.47199 * 55.00235 * 25 22 21 42 42 H 0.96702 * 114.00344 * 179.97438 * 26 25 22 43 43 H 1.07992 * 126.29090 * 179.73858 * 27 20 19 44 44 H 1.09005 * 109.58956 * 173.64794 * 28 14 13 45 45 H 1.08997 * 109.58716 * 293.93003 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5582 -0.8907 11 6 2.2451 -3.6628 0.0030 12 6 1.4812 -4.9885 -0.0302 13 6 0.6038 -5.0988 1.2260 14 7 -0.2554 -3.9095 1.3017 15 6 -1.5921 -4.0344 1.4215 16 8 -2.3018 -3.0483 1.3716 17 6 -2.1936 -5.3667 1.6133 18 6 -3.4828 -5.7721 1.2010 19 7 -3.6448 -7.0185 1.5502 20 7 -2.4841 -7.4637 2.1926 21 6 -2.2681 -8.8071 2.7355 22 6 -3.3921 -9.1479 3.7159 23 1 -3.4535 -8.3745 4.4815 24 8 -4.6332 -9.2201 3.0112 25 6 -3.1013 -10.4971 4.3762 26 8 -4.0884 -10.7611 5.3752 27 6 -1.6044 -6.4503 2.2331 28 6 0.3706 -2.5812 1.2504 29 1 -0.4851 0.8400 -0.0004 30 1 2.8891 -3.5928 -0.8736 31 1 2.8543 -3.6172 0.9055 32 1 0.8528 -5.0242 -0.9201 33 1 2.1900 -5.8163 -0.0519 34 1 1.2354 -5.1503 2.1129 35 1 -0.0154 -5.9936 1.1635 36 1 -4.2072 -5.1576 0.6870 37 1 -1.3104 -8.8392 3.2552 38 1 -2.2640 -9.5317 1.9213 39 1 -4.6508 -9.8890 2.3132 40 1 -3.1279 -11.2838 3.6223 41 1 -2.1147 -10.4702 4.8386 42 1 -3.9665 -11.6026 5.8359 43 1 -0.6165 -6.4785 2.6684 44 1 -0.4027 -1.8143 1.2040 45 1 0.9816 -2.4306 2.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647299743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:32 Heat of formation + Delta-G solvation = -80.605533 kcal Electronic energy + Delta-G solvation = -27699.269812 eV Core-core repulsion = 23717.546900 eV Total energy + Delta-G solvation = -3981.722912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47705 -40.52246 -39.11899 -38.17262 -36.80146 -35.31397 -34.34609 -33.48623 -31.96069 -31.11737 -30.63759 -27.19294 -26.92708 -26.08897 -23.54371 -23.17059 -23.05610 -21.84161 -21.20813 -20.09399 -18.63813 -18.37679 -17.88556 -17.70196 -17.24763 -16.93878 -16.65429 -16.50119 -16.11158 -15.67095 -15.25922 -15.08349 -14.90728 -14.69913 -14.52781 -14.37632 -14.16975 -13.92289 -13.69634 -13.58158 -13.41889 -13.08029 -12.83319 -12.67437 -12.25141 -12.23647 -12.11090 -11.87765 -11.67282 -11.56703 -11.18153 -11.09377 -10.93663 -10.90963 -10.68136 -10.49347 -10.37617 -9.67842 -9.26308 -8.07510 -6.25724 0.57562 1.23218 1.39836 1.41841 1.43699 1.51958 2.23449 2.43318 2.52168 2.96057 3.20064 3.45782 3.60475 3.74149 3.91704 3.99669 4.06375 4.14088 4.15772 4.22206 4.24593 4.42312 4.43083 4.55786 4.57778 4.62802 4.64031 4.79107 4.84318 4.92476 4.96324 5.13487 5.30358 5.32081 5.37287 5.44305 5.58651 5.71760 5.90248 5.95161 6.05462 6.36310 6.54944 6.78712 6.85106 6.88417 6.92756 7.42794 7.46690 8.95307 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027983 B = 0.002594 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.356633 B =10790.241694 C =11269.681389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.007 3.993 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.038 3.962 10 H -0.020 1.020 11 C -0.105 4.105 12 C -0.127 4.127 13 C 0.093 3.907 14 N -0.606 5.606 15 C 0.573 3.427 16 O -0.603 6.603 17 C -0.302 4.302 18 C 0.077 3.923 19 N -0.287 5.287 20 N -0.349 5.349 21 C 0.094 3.906 22 C 0.093 3.907 23 H 0.078 0.922 24 O -0.563 6.563 25 C 0.051 3.949 26 O -0.596 6.596 27 C 0.112 3.888 28 C 0.127 3.873 29 H 0.259 0.741 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.181 0.819 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.384 0.616 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.400 0.600 43 H 0.229 0.771 44 H 0.072 0.928 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -28.813 8.743 30.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.018 3.982 10 H -0.002 1.002 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.029 4.029 14 N -0.336 5.336 15 C 0.363 3.637 16 O -0.485 6.485 17 C -0.317 4.317 18 C -0.111 4.111 19 N -0.107 5.107 20 N -0.128 5.128 21 C -0.026 4.026 22 C 0.033 3.967 23 H 0.096 0.904 24 O -0.370 6.370 25 C -0.028 4.028 26 O -0.405 6.405 27 C -0.039 4.039 28 C 0.004 3.996 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.197 0.803 37 H 0.173 0.827 38 H 0.139 0.861 39 H 0.233 0.767 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.250 0.750 43 H 0.245 0.755 44 H 0.090 0.910 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.248 -28.317 8.980 29.707 hybrid contribution 0.781 1.616 -0.513 1.866 sum 0.532 -26.701 8.467 28.016 Atomic orbital electron populations 1.70112 1.07524 1.27257 1.50597 1.25938 0.95517 1.03049 0.94713 0.85615 0.78225 0.78711 0.79147 1.19320 1.21724 1.18951 1.21507 0.93308 0.91481 1.51103 0.91788 1.18900 0.93111 0.93965 0.92183 1.00216 1.21514 0.97555 0.94126 1.01038 1.21990 0.98905 0.98229 0.97324 1.22509 0.93479 0.87564 0.99300 1.48314 1.05569 1.08795 1.70967 1.18013 0.81969 0.87929 0.75744 1.90748 1.62137 1.41534 1.54079 1.20245 0.98409 0.95296 1.17798 1.24037 0.95682 0.92962 0.98392 1.77312 1.05330 1.12180 1.15915 1.48655 1.10290 1.11262 1.42624 1.22908 1.01806 0.78855 0.99002 1.22197 0.84083 0.97749 0.92690 0.90414 1.86743 1.34763 1.62693 1.52792 1.22848 0.92381 0.95740 0.91789 1.86513 1.53890 1.45545 1.54560 1.23701 0.97060 0.85830 0.97279 1.21673 0.97083 0.82858 0.97960 0.93230 0.93241 0.91874 0.94014 0.87378 0.88777 0.87135 0.80251 0.82741 0.86070 0.76696 0.90441 0.89612 0.75005 0.75486 0.90956 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.40 11.39 21.45 0.24 -57.16 16 2 C 0.01 0.41 5.30 84.66 0.45 0.85 16 3 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -29.76 8.56 25.60 0.22 -29.54 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.04 1.93 2.25 -11.46 -0.03 1.90 16 10 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 11 C -0.10 -3.95 5.10 30.62 0.16 -3.79 16 12 C -0.13 -3.58 6.10 30.82 0.19 -3.39 16 13 C 0.09 2.43 5.23 86.51 0.45 2.88 16 14 N -0.61 -24.46 2.97 -821.97 -2.44 -26.89 16 15 C 0.57 24.99 7.62 86.66 0.66 25.65 16 16 O -0.60 -33.53 16.45 -4.04 -0.07 -33.60 16 17 C -0.30 -9.81 5.56 -20.15 -0.11 -9.92 16 18 C 0.08 2.48 11.95 85.65 1.02 3.50 16 19 N -0.29 -7.91 11.45 -56.27 -0.64 -8.56 16 20 N -0.35 -6.53 3.65 -346.31 -1.26 -7.79 16 21 C 0.09 0.67 6.16 86.38 0.53 1.20 16 22 C 0.09 1.12 3.46 30.59 0.11 1.23 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 24 O -0.56 -10.60 12.32 -144.34 -1.78 -12.37 16 25 C 0.05 0.27 6.68 71.98 0.48 0.75 16 26 O -0.60 -6.98 13.62 -144.34 -1.97 -8.95 16 27 C 0.11 2.30 9.03 84.28 0.76 3.06 16 28 C 0.13 6.41 5.41 86.36 0.47 6.87 16 29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 2.17 4.19 -2.39 -0.01 2.16 16 36 H 0.18 5.88 8.06 -2.91 -0.02 5.85 16 37 H 0.15 -0.25 8.06 -2.38 -0.02 -0.27 16 38 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.38 4.21 9.04 -74.06 -0.67 3.54 16 40 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.09 -0.02 8.14 -2.39 -0.02 -0.03 16 42 H 0.40 0.73 9.12 -74.06 -0.68 0.06 16 43 H 0.23 2.54 6.41 -2.91 -0.02 2.52 16 44 H 0.07 4.46 5.11 -2.38 -0.01 4.45 16 45 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -93.45 366.74 -0.84 -94.29 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.31 Total: 12.89 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.36 Total: 1.24 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.10 Total: -100.40 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -3.81 Total: -54.92 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -93.45 -0.84 -94.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.685 kcal (2) G-P(sol) polarization free energy of solvation -93.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds