Wall clock time and date at job start Tue Mar 31 2020 14:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99802 * 2 1 4 4 H 1.48494 * 109.47172 * 274.71837 * 3 2 1 5 5 H 1.48500 * 109.47131 * 34.72314 * 3 2 1 6 6 H 1.48504 * 109.46896 * 154.71828 * 3 2 1 7 7 C 1.37871 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00207 * 354.91660 * 7 2 1 9 9 C 1.50703 * 119.99920 * 174.91408 * 7 2 1 10 10 H 1.08993 * 109.49795 * 335.25663 * 9 7 2 11 11 C 1.53045 * 109.52497 * 215.17293 * 9 7 2 12 12 C 1.53035 * 109.53654 * 178.66785 * 11 9 7 13 13 C 1.52762 * 109.38467 * 61.24162 * 12 11 9 14 14 N 1.46926 * 109.00984 * 305.58639 * 13 12 11 15 15 C 1.34775 * 120.63484 * 233.58411 * 14 13 12 16 16 O 1.21604 * 120.00460 * 181.06993 * 15 14 13 17 17 C 1.47431 * 119.99542 * 1.07068 * 15 14 13 18 18 C 1.41294 * 126.41501 * 333.01480 * 17 15 14 19 19 N 1.30450 * 108.02104 * 179.70766 * 18 17 15 20 20 N 1.39932 * 108.89639 * 0.40756 * 19 18 17 21 21 C 1.46507 * 125.75346 * 179.84750 * 20 19 18 22 22 C 1.52997 * 109.47007 * 304.69418 * 21 20 19 23 23 H 1.09003 * 109.47311 * 304.99257 * 22 21 20 24 24 O 1.42901 * 109.47338 * 64.99947 * 22 21 20 25 25 C 1.53002 * 109.46616 * 185.00078 * 22 21 20 26 26 O 1.42907 * 109.46926 * 174.99693 * 25 22 21 27 27 C 1.34258 * 108.49649 * 359.58495 * 20 19 18 28 28 C 1.46931 * 118.73608 * 53.30595 * 14 13 12 29 29 H 0.96998 * 120.00033 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.45935 * 298.68832 * 11 9 7 31 31 H 1.08996 * 109.45566 * 58.66388 * 11 9 7 32 32 H 1.09001 * 109.49600 * 181.31690 * 12 11 9 33 33 H 1.08998 * 109.49836 * 301.38438 * 12 11 9 34 34 H 1.09002 * 109.51201 * 185.70158 * 13 12 11 35 35 H 1.09006 * 109.42966 * 65.42394 * 13 12 11 36 36 H 1.07995 * 125.99078 * 0.02562 * 18 17 15 37 37 H 1.09001 * 109.46892 * 184.68808 * 21 20 19 38 38 H 1.09004 * 109.47005 * 64.69132 * 21 20 19 39 39 H 0.96702 * 113.99501 * 59.99920 * 24 22 21 40 40 H 1.09000 * 109.47677 * 54.99969 * 25 22 21 41 41 H 1.08995 * 109.47205 * 294.99349 * 25 22 21 42 42 H 0.96698 * 114.00183 * 179.97438 * 26 25 22 43 43 H 1.07996 * 126.29483 * 180.26418 * 27 20 19 44 44 H 1.09004 * 109.58150 * 66.43318 * 28 14 13 45 45 H 1.08996 * 109.58622 * 186.71352 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3969 2.1041 -1.3953 5 1 1.5000 2.6218 0.7975 6 1 3.5930 1.4135 0.5980 7 6 2.0045 -1.1940 -0.0005 8 1 1.4678 -2.1275 0.0819 9 6 3.5071 -1.1965 -0.1162 10 1 3.8352 -0.2838 -0.6135 11 6 3.9554 -2.4117 -0.9314 12 6 5.4787 -2.3965 -1.0773 13 6 6.1213 -2.4782 0.3062 14 7 5.5846 -1.3999 1.1476 15 6 6.4130 -0.5446 1.7790 16 8 5.9569 0.3317 2.4882 17 6 7.8720 -0.6714 1.6099 18 6 8.5813 -1.8545 1.3042 19 7 9.8495 -1.5576 1.2319 20 7 10.0109 -0.1924 1.4933 21 6 11.2847 0.5311 1.5107 22 6 12.2433 -0.1475 2.4911 23 1 11.7708 -0.2189 3.4708 24 8 12.5595 -1.4583 2.0179 25 6 13.5268 0.6778 2.6030 26 8 14.3733 0.1086 3.6039 27 6 8.8010 0.3438 1.7199 28 6 4.1275 -1.2680 1.2826 29 1 -0.4850 0.8400 0.0004 30 1 3.6485 -3.3246 -0.4210 31 1 3.4958 -2.3759 -1.9191 32 1 5.7952 -3.2495 -1.6777 33 1 5.7882 -1.4727 -1.5660 34 1 7.2015 -2.3658 0.2130 35 1 5.8899 -3.4433 0.7571 36 1 8.1488 -2.8323 1.1515 37 1 11.1133 1.5610 1.8240 38 1 11.7207 0.5231 0.5117 39 1 12.9837 -1.4711 1.1490 40 1 13.2772 1.7025 2.8782 41 1 14.0453 0.6750 1.6443 42 1 15.2075 0.5815 3.7289 43 1 8.5928 1.3790 1.9463 44 1 3.7302 -2.1323 1.8148 45 1 3.8926 -0.3586 1.8357 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647299744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:35 Heat of formation + Delta-G solvation = -74.073283 kcal Electronic energy + Delta-G solvation = -27654.131964 eV Core-core repulsion = 23672.692312 eV Total energy + Delta-G solvation = -3981.439652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52813 -40.68597 -39.14894 -38.31860 -36.83512 -35.38431 -34.44549 -33.46502 -32.26494 -31.42221 -30.76306 -27.59319 -26.76408 -26.22866 -23.59134 -23.14876 -23.04975 -21.90090 -21.15408 -20.13942 -19.13899 -18.67075 -18.03952 -17.71346 -17.23304 -16.99644 -16.73084 -16.56313 -16.10475 -15.82719 -15.41551 -15.22266 -14.92617 -14.85609 -14.59537 -14.45304 -14.27986 -13.96455 -13.78697 -13.69732 -13.60836 -13.19032 -13.05206 -12.57050 -12.54759 -12.20448 -12.00745 -11.91121 -11.68073 -11.53450 -11.21340 -11.15682 -11.09606 -10.97806 -10.78233 -10.68295 -10.41348 -9.77468 -9.38923 -8.33736 -6.35489 0.54852 1.17632 1.25559 1.33053 1.33972 1.48164 2.10349 2.30686 2.42281 2.92320 3.04744 3.42039 3.58665 3.76690 3.85645 3.90847 4.00531 4.07675 4.10079 4.18468 4.20239 4.29086 4.36733 4.48201 4.51401 4.53641 4.56794 4.69884 4.79738 4.82413 4.91931 5.00627 5.04326 5.14810 5.27193 5.37955 5.47187 5.60965 5.67973 5.77752 5.83703 6.30374 6.51928 6.62597 6.73150 6.82455 6.89281 7.28594 7.30909 8.82726 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025139 B = 0.002766 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.518661 B =10121.138874 C =10793.556808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.020 3.980 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.508 4.508 8 H 0.043 0.957 9 C 0.007 3.993 10 H 0.021 0.979 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.081 3.919 14 N -0.604 5.604 15 C 0.580 3.420 16 O -0.605 6.605 17 C -0.307 4.307 18 C 0.065 3.935 19 N -0.283 5.283 20 N -0.352 5.352 21 C 0.095 3.905 22 C 0.098 3.902 23 H 0.078 0.922 24 O -0.559 6.559 25 C 0.050 3.950 26 O -0.594 6.594 27 C 0.123 3.877 28 C 0.124 3.876 29 H 0.266 0.734 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.221 0.779 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.385 0.615 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.400 0.600 43 H 0.203 0.797 44 H 0.060 0.940 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.968 1.328 -0.339 32.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.547 4.547 8 H 0.062 0.938 9 C -0.013 4.013 10 H 0.040 0.960 11 C -0.139 4.139 12 C -0.165 4.165 13 C -0.040 4.040 14 N -0.334 5.334 15 C 0.371 3.629 16 O -0.488 6.488 17 C -0.322 4.322 18 C -0.122 4.122 19 N -0.103 5.103 20 N -0.131 5.131 21 C -0.025 4.025 22 C 0.037 3.963 23 H 0.096 0.904 24 O -0.365 6.365 25 C -0.028 4.028 26 O -0.403 6.403 27 C -0.029 4.029 28 C 0.001 3.999 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.236 0.764 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.234 0.766 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.250 0.750 43 H 0.220 0.780 44 H 0.078 0.922 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 33.165 0.903 0.409 33.180 hybrid contribution -1.013 1.836 -0.110 2.100 sum 32.152 2.739 0.299 32.270 Atomic orbital electron populations 1.70026 1.07831 1.27895 1.52464 1.25796 0.95313 1.02325 0.94321 0.85982 0.79699 0.80109 0.78632 1.19221 1.21467 1.18302 1.21213 0.91116 0.93153 1.49215 0.93847 1.19424 0.93423 0.96146 0.92326 0.96036 1.21468 0.95353 0.97615 0.99507 1.21873 0.94822 1.03032 0.96818 1.22646 1.00934 0.89868 0.90520 1.48236 1.06470 1.31276 1.47428 1.17891 0.86116 0.80304 0.78624 1.90710 1.78797 1.37225 1.42057 1.20148 0.92672 0.96115 1.23254 1.24754 0.90030 0.99797 0.97639 1.77313 1.17967 0.92061 1.22928 1.48574 1.06348 1.06583 1.51598 1.22835 0.80000 0.96428 1.03265 1.22119 0.93502 0.83786 0.96878 0.90355 1.86731 1.82574 1.27104 1.40135 1.22838 0.90750 0.96562 0.92685 1.86505 1.35113 1.58897 1.59796 1.23188 0.84102 1.00245 0.95360 1.21918 0.77823 1.00530 0.99584 0.92508 0.92372 0.92945 0.87656 0.92834 0.85898 0.89411 0.76354 0.83954 0.86136 0.76603 0.90136 0.90369 0.74984 0.78010 0.92156 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.02 1.22 5.47 84.65 0.46 1.68 16 3 Si 0.93 47.44 26.63 68.60 1.83 49.26 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.26 -13.38 6.00 99.48 0.60 -12.78 16 7 C -0.51 -29.00 8.87 25.60 0.23 -28.77 16 8 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 9 C 0.01 0.31 1.79 -11.46 -0.02 0.29 16 10 H 0.02 1.05 5.59 -2.39 -0.01 1.04 16 11 C -0.10 -3.76 5.15 30.62 0.16 -3.61 16 12 C -0.13 -3.47 6.06 30.53 0.19 -3.29 16 13 C 0.08 2.11 5.45 86.22 0.47 2.58 16 14 N -0.60 -22.07 2.98 -823.58 -2.45 -24.52 16 15 C 0.58 21.96 7.65 86.67 0.66 22.62 16 16 O -0.60 -28.23 16.42 -4.04 -0.07 -28.29 16 17 C -0.31 -8.68 5.74 -20.15 -0.12 -8.79 16 18 C 0.06 1.50 9.72 85.65 0.83 2.33 16 19 N -0.28 -6.36 11.47 -56.27 -0.65 -7.00 16 20 N -0.35 -6.35 3.65 -346.28 -1.26 -7.61 16 21 C 0.09 0.74 6.16 86.38 0.53 1.27 16 22 C 0.10 1.12 3.46 30.59 0.11 1.23 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 O -0.56 -9.31 12.33 -144.35 -1.78 -11.09 16 25 C 0.05 0.27 6.68 71.98 0.48 0.75 16 26 O -0.59 -6.68 13.62 -144.35 -1.97 -8.65 16 27 C 0.12 2.72 11.35 84.28 0.96 3.67 16 28 C 0.12 5.57 5.52 86.36 0.48 6.05 16 29 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.12 2.57 3.25 -2.39 -0.01 2.56 16 35 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 36 H 0.22 3.92 5.84 -2.91 -0.02 3.91 16 37 H 0.14 0.19 8.06 -2.39 -0.02 0.17 16 38 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.39 3.42 9.05 -74.06 -0.67 2.75 16 40 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.40 0.61 9.12 -74.06 -0.68 -0.07 16 43 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 45 H 0.05 2.46 5.92 -2.39 -0.01 2.45 16 Total: -1.00 -88.91 362.99 -1.05 -89.96 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -0.42 Total: 9.21 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.41 Total: -1.98 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.06 Total: -98.43 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -3.81 Total: -48.03 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.83 Total: 49.26 kcal Total: -88.91 -1.05 -89.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.888 kcal (2) G-P(sol) polarization free energy of solvation -88.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds