Wall clock time and date at job start Tue Mar 31 2020 14:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35135 * 125.61762 * 2 1 4 4 C 1.40365 * 107.11128 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.63995 * 180.02562 * 4 3 2 6 6 C 1.36542 * 106.71321 * 0.02562 * 4 3 2 7 7 C 1.46655 * 125.99035 * 179.97438 * 6 4 3 8 8 O 1.21703 * 119.99810 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00110 * 179.72349 * 7 6 4 10 10 C 1.46504 * 119.99854 * 180.27595 * 9 7 6 11 11 C 1.52996 * 109.46681 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46956 * 294.99091 * 11 10 9 13 13 C 1.53004 * 109.46644 * 174.99857 * 11 10 9 14 14 N 1.46891 * 109.47395 * 54.99686 * 11 10 9 15 15 C 1.46906 * 111.00023 * 204.99510 * 14 11 10 16 16 C 1.50696 * 109.46922 * 179.97438 * 15 14 11 17 17 O 1.21292 * 120.00700 * 0.02562 * 16 15 14 18 18 N 1.34782 * 120.00084 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00524 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99670 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00246 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99815 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99919 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47263 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47013 * 119.99889 * 23 21 19 26 26 H 1.48503 * 109.47185 * 239.99807 * 23 21 19 27 27 O 1.33936 * 125.61413 * 180.31339 * 2 1 3 28 28 H 1.08997 * 109.47295 * 89.99425 * 1 2 3 29 29 H 1.08994 * 109.47298 * 209.99842 * 1 2 3 30 30 H 1.09007 * 109.46974 * 329.99809 * 1 2 3 31 31 H 1.08001 * 126.44277 * 0.05943 * 3 2 1 32 32 H 1.08994 * 109.47416 * 269.97442 * 5 4 3 33 33 H 1.08991 * 109.47304 * 29.97975 * 5 4 3 34 34 H 1.09002 * 109.46528 * 149.97487 * 5 4 3 35 35 H 0.96990 * 119.99728 * 0.26873 * 9 7 6 36 36 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 37 37 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 38 38 H 1.08992 * 109.47419 * 299.99360 * 13 11 10 39 39 H 1.09000 * 109.47026 * 60.00316 * 13 11 10 40 40 H 1.09001 * 109.47086 * 179.97438 * 13 11 10 41 41 H 1.00906 * 110.99920 * 81.04446 * 14 11 10 42 42 H 1.08993 * 109.47079 * 300.00337 * 15 14 11 43 43 H 1.08998 * 109.46856 * 60.00434 * 15 14 11 44 44 H 0.97009 * 119.99652 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00205 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 4.8618 1.5143 -0.0003 6 6 3.5823 -0.7117 -0.0015 7 6 4.7414 -1.6103 -0.0029 8 8 5.8680 -1.1501 -0.0038 9 7 4.5589 -2.9456 0.0019 10 6 5.7168 -3.8431 0.0066 11 6 5.2361 -5.2956 0.0122 12 1 4.7089 -5.5002 0.9440 13 6 6.4403 -6.2317 -0.1087 14 7 4.3290 -5.5156 -1.1221 15 6 3.4101 -6.6297 -0.8530 16 6 2.4969 -6.8245 -2.0358 17 8 2.6015 -6.1063 -3.0076 18 7 1.5639 -7.7969 -2.0140 19 6 0.7334 -7.9745 -3.0902 20 1 0.8266 -7.3349 -3.9554 21 6 -0.2288 -8.9766 -3.0673 22 7 -0.3425 -9.7545 -2.0143 23 14 -1.3608 -9.2181 -4.5335 24 1 -1.0307 -8.2210 -5.5833 25 1 -1.1801 -10.5878 -5.0781 26 1 -2.7712 -9.0379 -4.1050 27 8 2.2869 -1.0888 -0.0060 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9613 2.1260 0.0009 32 1 5.1600 1.7223 -1.0278 33 1 4.6514 2.4520 0.5139 34 1 5.6685 0.9913 0.5134 35 1 3.6610 -3.3123 0.0024 36 1 6.3197 -3.6630 -0.8834 37 1 6.3178 -3.6562 0.8965 38 1 6.9674 -6.0272 -1.0404 39 1 7.1132 -6.0685 0.7331 40 1 6.0979 -7.2666 -0.1043 41 1 4.8467 -5.6715 -1.9741 42 1 3.9838 -7.5407 -0.6825 43 1 2.8149 -6.4041 0.0318 44 1 1.4800 -8.3711 -1.2366 45 1 -1.0140 -10.4543 -1.9985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690564964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:33 Heat of formation + Delta-G solvation = -94.087260 kcal Electronic energy + Delta-G solvation = -26906.328320 eV Core-core repulsion = 22924.020797 eV Total energy + Delta-G solvation = -3982.307523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.73318 -40.63195 -40.12910 -38.18382 -36.00183 -35.48699 -34.75033 -33.38895 -33.26056 -31.93382 -28.92973 -28.78513 -27.97569 -26.61880 -25.61794 -22.70034 -22.33203 -22.00785 -21.12633 -20.57177 -19.92339 -19.08956 -17.82312 -17.60516 -17.22571 -16.78307 -16.54060 -16.33071 -16.22263 -15.82753 -15.38973 -15.36129 -14.90452 -14.53214 -14.39749 -14.12138 -14.02083 -13.77939 -13.71374 -13.66391 -13.58319 -13.43512 -13.37338 -13.24621 -13.08164 -12.79407 -12.57739 -12.54261 -12.39809 -12.12183 -11.92214 -11.51322 -11.22028 -10.64851 -10.34970 -10.17962 -10.01001 -9.39945 -9.35341 -8.46989 -5.95265 0.00181 1.32314 1.36045 1.41613 1.55437 1.65718 2.06227 2.09250 2.24735 2.29232 2.89060 3.20686 3.50680 3.62038 3.79429 3.81564 3.87040 4.09682 4.30118 4.33776 4.45693 4.47686 4.48154 4.58020 4.59798 4.63528 4.68728 4.69635 4.76500 4.78951 4.88027 4.96581 4.98335 5.15767 5.21386 5.26206 5.36836 5.41202 5.53612 5.87381 5.90534 6.09280 6.35208 6.47874 6.60504 7.03735 7.13322 7.57091 8.12775 8.70587 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011388 B = 0.002952 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.099739 B = 9481.372109 C =11450.424665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.020 3.980 3 C -0.229 4.229 4 C -0.092 4.092 5 C -0.090 4.090 6 C -0.123 4.123 7 C 0.597 3.403 8 O -0.556 6.556 9 N -0.698 5.698 10 C 0.134 3.866 11 C 0.076 3.924 12 H 0.099 0.901 13 C -0.175 4.175 14 N -0.677 5.677 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.270 1.270 27 O -0.177 6.177 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.185 0.815 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.346 0.654 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.397 0.603 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 15.911 10.473 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.248 4.248 4 C -0.095 4.095 5 C -0.146 4.146 6 C -0.174 4.174 7 C 0.384 3.616 8 O -0.438 6.438 9 N -0.347 5.347 10 C 0.010 3.990 11 C -0.034 4.034 12 H 0.117 0.883 13 C -0.234 4.234 14 N -0.310 5.310 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.195 1.195 27 O -0.074 6.074 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.139 0.861 31 H 0.202 0.798 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.248 0.752 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.165 0.835 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.605 16.664 10.071 20.560 hybrid contribution -0.427 -1.539 -0.625 1.715 sum 6.178 15.125 9.445 18.872 Atomic orbital electron populations 1.20651 0.81978 1.05915 1.05067 1.23652 0.95844 0.83681 1.00014 1.21805 0.90768 1.01065 1.11156 1.21019 0.97844 0.91961 0.98701 1.20418 0.92716 0.98404 1.03065 1.21865 0.82239 0.94767 1.18492 1.16686 0.85995 0.82108 0.76797 1.90784 1.22942 1.76619 1.53436 1.45774 1.11835 1.04652 1.72477 1.21505 0.87264 0.87812 1.02377 1.21879 0.93360 0.93376 0.94819 0.88272 1.22370 0.98071 0.99422 1.03520 1.60133 1.21927 1.43259 1.05654 1.21567 0.94706 0.94388 0.95933 1.20925 0.84092 0.82233 0.90216 1.90509 1.73859 1.48827 1.37831 1.41933 1.30723 1.30465 1.17963 1.19665 1.13010 1.16184 0.97267 0.90536 1.25997 0.99094 0.95219 1.00870 1.69670 1.36043 1.20326 1.30060 0.84908 0.77845 0.78192 0.77631 1.19924 1.19641 1.19538 1.84035 1.15959 1.36034 1.71374 0.88673 0.89993 0.86054 0.79757 0.90670 0.88989 0.91199 0.75177 0.92214 0.89520 0.92213 0.89721 0.91872 0.83501 0.91201 0.87571 0.76953 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.41 71.24 0.74 -0.34 16 2 C 0.02 0.45 7.31 24.97 0.18 0.63 16 3 C -0.23 -4.67 10.73 22.07 0.24 -4.43 16 4 C -0.09 -2.34 6.20 -19.74 -0.12 -2.46 16 5 C -0.09 -1.91 9.81 71.24 0.70 -1.21 16 6 C -0.12 -3.62 7.13 24.07 0.17 -3.45 16 7 C 0.60 18.40 7.79 86.44 0.67 19.08 16 8 O -0.56 -18.84 14.74 -4.36 -0.06 -18.91 16 9 N -0.70 -19.13 5.38 -467.10 -2.51 -21.65 16 10 C 0.13 3.08 5.37 86.38 0.46 3.54 16 11 C 0.08 1.57 2.75 44.92 0.12 1.69 16 12 H 0.10 1.82 7.80 -2.39 -0.02 1.80 16 13 C -0.17 -2.95 9.16 71.98 0.66 -2.30 16 14 N -0.68 -19.67 5.31 -495.60 -2.63 -22.30 16 15 C 0.07 2.10 5.97 85.55 0.51 2.61 16 16 C 0.44 20.23 7.82 87.65 0.69 20.91 16 17 O -0.62 -34.18 15.78 -3.07 -0.05 -34.22 16 18 N -0.57 -28.82 5.29 -306.98 -1.62 -30.45 16 19 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -49.03 13.05 21.66 0.28 -48.74 16 23 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 O -0.18 -5.06 10.40 -5.11 -0.05 -5.12 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.73 6.45 -2.39 -0.02 1.72 16 35 H 0.41 11.63 7.89 -92.72 -0.73 10.90 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.09 7.45 -2.39 -0.02 1.08 16 41 H 0.35 11.01 8.17 -89.69 -0.73 10.28 16 42 H 0.07 1.91 7.44 -2.39 -0.02 1.90 16 43 H 0.11 2.97 8.06 -2.39 -0.02 2.95 16 44 H 0.40 18.84 7.90 -92.70 -0.73 18.10 16 45 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 Total: -1.00 -72.99 384.39 0.52 -72.46 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -1.15 Total: 48.01 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.31 Total: 16.25 kcal Atomic # 7 Polarization: -116.65 SS G_CDS: -6.49 Total: -123.14 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -0.17 Total: -58.25 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.99 0.52 -72.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690564964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.623 kcal (2) G-P(sol) polarization free energy of solvation -72.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds