Wall clock time and date at job start Tue Mar 31 2020 14:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35135 * 125.61519 * 2 1 4 4 C 1.40363 * 107.11353 * 180.02562 * 3 2 1 5 5 C 1.36544 * 106.70812 * 0.02562 * 4 3 2 6 6 C 1.46665 * 125.98683 * 179.97438 * 5 4 3 7 7 O 1.21693 * 119.99898 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99616 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99622 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 C 1.52997 * 109.47448 * 184.99813 * 11 10 9 14 14 N 1.46910 * 109.47127 * 65.00091 * 11 10 9 15 15 C 1.46900 * 111.00108 * 205.00462 * 14 11 10 16 16 C 1.50692 * 109.47257 * 179.97438 * 15 14 11 17 17 O 1.21300 * 119.99825 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00248 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00059 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00291 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00022 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00228 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99784 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47391 * 90.00443 * 23 21 19 25 25 H 1.48500 * 109.47102 * 209.99830 * 23 21 19 26 26 H 1.48497 * 109.47287 * 330.00242 * 23 21 19 27 27 O 1.33930 * 125.61954 * 180.32377 * 2 1 3 28 28 H 1.09001 * 109.47313 * 89.99857 * 1 2 3 29 29 H 1.09003 * 109.47572 * 210.00032 * 1 2 3 30 30 H 1.09004 * 109.47552 * 330.00417 * 1 2 3 31 31 H 1.08003 * 126.44450 * 0.03270 * 3 2 1 32 32 H 1.08000 * 126.64564 * 179.97438 * 4 3 2 33 33 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 35 35 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 36 36 H 1.09002 * 109.47153 * 300.00008 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99637 * 10 9 8 38 38 H 1.09000 * 109.47346 * 300.00002 * 13 11 10 39 39 H 1.09007 * 109.46964 * 60.00529 * 13 11 10 40 40 H 1.09004 * 109.47224 * 180.02562 * 13 11 10 41 41 H 1.00891 * 110.99568 * 81.04576 * 14 11 10 42 42 H 1.09001 * 109.46729 * 299.99669 * 15 14 11 43 43 H 1.08996 * 109.47288 * 59.99365 * 15 14 11 44 44 H 0.96995 * 120.00099 * 0.02562 * 18 16 15 45 45 H 0.96996 * 120.00445 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5822 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9454 -0.0043 9 6 5.7168 -3.8430 -0.0062 10 6 5.2362 -5.2955 -0.0068 11 6 6.4454 -6.2328 -0.0095 12 1 7.0924 -5.9888 -0.8520 13 6 5.9679 -7.6809 -0.1357 14 7 7.1929 -6.0714 1.2448 15 6 8.6006 -6.4540 1.0717 16 6 9.3339 -6.2750 2.3759 17 8 8.7421 -5.8681 3.3535 18 7 10.6472 -6.5669 2.4563 19 6 11.3142 -6.4045 3.6430 20 1 10.7873 -6.0422 4.5134 21 6 12.6683 -6.7049 3.7257 22 7 13.3077 -6.5488 4.8631 23 14 13.5797 -7.3308 2.2201 24 1 14.1353 -6.1800 1.4638 25 1 14.6871 -8.2233 2.6473 26 1 12.6414 -8.0868 1.3523 27 8 2.2870 -1.0887 -0.0062 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.9612 2.1261 0.0005 32 1 4.5113 1.2703 -0.0011 33 1 3.6610 -3.3123 -0.0039 34 1 6.3180 -3.6585 -0.8966 35 1 6.3196 -3.6604 0.8834 36 1 4.6352 -5.4797 0.8837 37 1 4.6332 -5.4784 -0.8962 38 1 5.3209 -7.9250 0.7069 39 1 5.4133 -7.8008 -1.0665 40 1 6.8294 -8.3487 -0.1372 41 1 6.7643 -6.5975 1.9914 42 1 8.6580 -7.4977 0.7625 43 1 9.0574 -5.8235 0.3089 44 1 11.1205 -6.8919 1.6745 45 1 14.2529 -6.7589 4.9210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690831544.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:40 Heat of formation + Delta-G solvation = -90.759895 kcal Electronic energy + Delta-G solvation = -26102.876819 eV Core-core repulsion = 22120.713581 eV Total energy + Delta-G solvation = -3982.163238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.73195 -40.65045 -40.32518 -38.35999 -36.18886 -35.85499 -34.28659 -33.77191 -33.10139 -32.54610 -30.12353 -28.08119 -27.99077 -25.62239 -24.51880 -22.92338 -22.64193 -21.85179 -21.32783 -21.10276 -20.28737 -19.38866 -17.73194 -17.58391 -17.11840 -17.00835 -16.67562 -16.52002 -16.36186 -15.88473 -15.51780 -15.31365 -14.97386 -14.59537 -14.44974 -14.32707 -14.14294 -14.05085 -14.00286 -13.90075 -13.69616 -13.58484 -13.15092 -12.87889 -12.79084 -12.67517 -12.42046 -12.29884 -12.21167 -11.97611 -11.74766 -11.52195 -11.47215 -11.08410 -10.44177 -10.28912 -10.25381 -9.48625 -9.24633 -8.42016 -6.02963 -0.04364 1.28882 1.31783 1.35444 1.43718 1.53245 1.95740 2.05164 2.16429 2.22446 2.74825 3.14286 3.44618 3.58683 3.84308 3.87465 3.92476 4.12031 4.13240 4.27368 4.42727 4.47033 4.52012 4.54592 4.58128 4.59831 4.71236 4.73617 4.74207 4.90309 4.93183 5.01130 5.13110 5.17588 5.18404 5.30907 5.36040 5.43895 5.52650 5.81786 5.91468 6.10938 6.39892 6.45316 6.59442 6.87581 6.98206 7.39310 7.96501 8.75792 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002071 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.367149 B =13514.690610 C =14385.475749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 C -0.232 4.232 4 C -0.125 4.125 5 C -0.110 4.110 6 C 0.595 3.405 7 O -0.566 6.566 8 N -0.705 5.705 9 C 0.125 3.875 10 C -0.105 4.105 11 C 0.085 3.915 12 H 0.090 0.910 13 C -0.176 4.176 14 N -0.684 5.684 15 C 0.063 3.937 16 C 0.447 3.553 17 O -0.615 6.615 18 N -0.592 5.592 19 C -0.329 4.329 20 H 0.053 0.947 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.274 1.274 26 H -0.230 1.230 27 O -0.167 6.167 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.184 0.816 32 H 0.157 0.843 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.345 0.655 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.390 0.610 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.698 5.698 -20.342 34.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.146 4.146 5 C -0.161 4.161 6 C 0.382 3.618 7 O -0.448 6.448 8 N -0.355 5.355 9 C 0.002 3.998 10 C -0.143 4.143 11 C -0.025 4.025 12 H 0.109 0.891 13 C -0.235 4.235 14 N -0.316 5.316 15 C -0.069 4.069 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.234 5.234 19 C -0.459 4.459 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.184 1.184 25 H -0.199 1.199 26 H -0.153 1.153 27 O -0.064 6.064 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.132 0.868 31 H 0.201 0.799 32 H 0.174 0.826 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.164 0.836 42 H 0.097 0.903 43 H 0.128 0.872 44 H 0.225 0.775 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.079 6.589 -19.663 34.108 hybrid contribution 0.995 -1.027 0.152 1.438 sum -26.085 5.562 -19.512 33.046 Atomic orbital electron populations 1.20679 0.81170 1.06025 1.05498 1.23749 0.95965 0.83369 0.99589 1.21943 0.91055 1.01471 1.10573 1.22241 1.00038 0.92943 0.99355 1.21778 0.82189 0.94720 1.17441 1.16828 0.85993 0.82436 0.76541 1.90884 1.23997 1.76991 1.52879 1.45848 1.11641 1.04772 1.73270 1.21375 0.87220 0.89424 1.01796 1.21716 0.97673 0.90970 1.03930 1.21628 0.94697 0.94564 0.91574 0.89140 1.22435 1.01861 0.95734 1.03457 1.60195 1.00725 1.62920 1.07790 1.21638 0.90076 1.01671 0.93524 1.21091 0.82242 0.81551 0.91630 1.90547 1.67965 1.50630 1.40835 1.42037 1.09178 1.60949 1.11192 1.19006 0.93400 1.43842 0.89611 0.92850 1.26150 0.96701 0.97188 1.01507 1.69806 1.11065 1.48938 1.27743 0.85342 0.78943 0.79363 0.77715 1.18363 1.19869 1.15273 1.83970 1.15327 1.35928 1.71176 0.87761 0.89330 0.86770 0.79913 0.82562 0.74705 0.91888 0.92962 0.90907 0.88009 0.92382 0.89815 0.92691 0.83604 0.90341 0.87209 0.77475 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.41 71.23 0.74 0.43 16 2 C 0.03 0.35 7.31 24.97 0.18 0.54 16 3 C -0.23 -3.49 10.77 22.07 0.24 -3.25 16 4 C -0.12 -2.73 10.62 22.39 0.24 -2.49 16 5 C -0.11 -2.64 7.13 24.08 0.17 -2.47 16 6 C 0.59 17.02 7.79 86.44 0.67 17.69 16 7 O -0.57 -21.10 16.86 -4.33 -0.07 -21.18 16 8 N -0.70 -15.74 5.55 -467.09 -2.59 -18.34 16 9 C 0.12 2.96 5.56 86.38 0.48 3.44 16 10 C -0.10 -1.71 5.00 30.59 0.15 -1.56 16 11 C 0.09 1.57 2.59 44.91 0.12 1.69 16 12 H 0.09 1.53 7.80 -2.39 -0.02 1.51 16 13 C -0.18 -2.53 9.16 71.98 0.66 -1.87 16 14 N -0.68 -19.47 5.33 -495.59 -2.64 -22.11 16 15 C 0.06 1.94 5.96 85.55 0.51 2.45 16 16 C 0.45 20.73 7.82 87.66 0.69 21.41 16 17 O -0.62 -35.17 15.78 -3.09 -0.05 -35.22 16 18 N -0.59 -28.70 5.09 -306.99 -1.56 -30.26 16 19 C -0.33 -19.85 10.16 84.04 0.85 -18.99 16 20 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 21 C -0.02 -0.97 5.50 84.93 0.47 -0.50 16 22 N -0.93 -57.61 13.96 21.66 0.30 -57.31 16 23 Si 0.97 39.71 27.74 68.60 1.90 41.61 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 27 O -0.17 -3.18 10.40 -4.95 -0.05 -3.23 16 28 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.11 0.03 8.14 -2.38 -0.02 0.01 16 31 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.42 6.68 8.23 -92.71 -0.76 5.92 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 39 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.05 0.85 7.45 -2.38 -0.02 0.83 16 41 H 0.34 10.55 8.17 -89.70 -0.73 9.82 16 42 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 43 H 0.11 2.94 8.05 -2.39 -0.02 2.92 16 44 H 0.39 15.61 5.76 -92.71 -0.53 15.07 16 45 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -87.86 384.82 0.35 -87.50 By element: Atomic # 1 Polarization: 43.08 SS G_CDS: -1.05 Total: 42.02 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.17 Total: 16.52 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -6.49 Total: -128.03 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -0.17 Total: -59.63 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.90 Total: 41.61 kcal Total: -87.86 0.35 -87.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690831544.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.255 kcal (2) G-P(sol) polarization free energy of solvation -87.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds