Wall clock time and date at job start Tue Mar 31 2020 14:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35122 * 125.61849 * 2 1 4 4 C 1.40362 * 107.11594 * 180.02562 * 3 2 1 5 5 C 1.36552 * 106.70641 * 0.02562 * 4 3 2 6 6 C 1.46659 * 125.98532 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00355 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47704 * 54.99481 * 11 10 9 13 13 C 1.53000 * 109.47194 * 175.00077 * 11 10 9 14 14 N 1.46909 * 109.46754 * 294.99510 * 11 10 9 15 15 C 1.46902 * 110.99504 * 155.00241 * 14 11 10 16 16 C 1.50702 * 109.46730 * 180.02562 * 15 14 11 17 17 O 1.21295 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00164 * 179.97438 * 16 15 14 19 19 C 1.37102 * 120.00303 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00356 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47021 * 60.00019 * 23 21 19 25 25 H 1.48494 * 109.47353 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46876 * 300.00368 * 23 21 19 27 27 O 1.33932 * 125.61283 * 180.32995 * 2 1 3 28 28 H 1.08999 * 109.47210 * 89.99569 * 1 2 3 29 29 H 1.08995 * 109.47546 * 209.99749 * 1 2 3 30 30 H 1.09003 * 109.46991 * 329.99682 * 1 2 3 31 31 H 1.08002 * 126.44177 * 0.04379 * 3 2 1 32 32 H 1.07997 * 126.65138 * 179.97438 * 4 3 2 33 33 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 35 35 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 36 36 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 37 37 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 38 38 H 1.09004 * 109.47242 * 59.99175 * 13 11 10 39 39 H 1.09000 * 109.47237 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46818 * 299.99696 * 13 11 10 41 41 H 1.00897 * 110.99647 * 278.95522 * 14 11 10 42 42 H 1.08996 * 109.47071 * 299.99790 * 15 14 11 43 43 H 1.08993 * 109.47443 * 60.00317 * 15 14 11 44 44 H 0.97003 * 120.00110 * 0.02562 * 18 16 15 45 45 H 0.96996 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5822 -0.7119 -0.0015 6 6 4.7414 -1.6104 -0.0029 7 8 5.8679 -1.1503 -0.0029 8 7 4.5588 -2.9457 -0.0043 9 6 5.7166 -3.8433 -0.0051 10 6 5.2359 -5.2958 -0.0072 11 6 6.4451 -6.2332 -0.0074 12 1 7.0928 -5.9910 0.8350 13 6 5.9676 -7.6815 0.1162 14 7 7.1915 -6.0691 -1.2621 15 6 8.5993 -6.4523 -1.0909 16 6 9.3316 -6.2705 -2.3955 17 8 8.7390 -5.8614 -3.3716 18 7 10.6450 -6.5614 -2.4773 19 6 11.3110 -6.3965 -3.6643 20 1 10.7833 -6.0331 -4.5336 21 6 12.6652 -6.6959 -3.7484 22 7 13.3076 -7.1376 -2.6905 23 14 13.5729 -6.4705 -5.3655 24 1 13.4933 -5.0478 -5.7837 25 1 14.9964 -6.8561 -5.1921 26 1 12.9504 -7.3279 -6.4061 27 8 2.2869 -1.0888 -0.0063 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9613 2.1259 0.0007 32 1 4.5113 1.2701 -0.0011 33 1 3.6608 -3.3124 -0.0039 34 1 6.3186 -3.6607 0.8851 35 1 6.3186 -3.6589 -0.8949 36 1 4.6337 -5.4805 0.8824 37 1 4.6342 -5.4781 -0.8975 38 1 5.3199 -7.9237 -0.7264 39 1 6.8291 -8.3494 0.1156 40 1 5.4137 -7.8033 1.0470 41 1 6.7623 -6.5937 -2.0094 42 1 9.0568 -5.8233 -0.3272 43 1 8.6570 -7.4965 -0.7840 44 1 11.1190 -6.8881 -1.6966 45 1 14.2528 -7.3469 -2.7494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690831545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:44 Heat of formation + Delta-G solvation = -68.362162 kcal Electronic energy + Delta-G solvation = -26049.199015 eV Core-core repulsion = 22068.007015 eV Total energy + Delta-G solvation = -3981.191999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.98511 -39.56312 -38.43850 -37.08917 -34.96442 -33.87334 -33.56690 -32.37565 -31.55130 -31.06550 -29.19735 -27.33602 -26.28320 -24.18808 -23.50947 -22.05896 -21.84695 -20.92246 -20.25763 -19.23689 -18.47974 -17.84462 -16.79547 -16.14714 -15.96868 -15.81022 -15.61953 -15.18760 -14.68884 -14.53589 -14.36605 -13.96696 -13.70856 -13.62870 -13.51935 -13.39570 -13.27380 -13.20884 -13.03231 -12.72453 -12.33514 -12.14874 -11.92183 -11.54830 -11.51607 -11.35406 -11.22292 -10.98688 -10.87171 -10.41194 -10.36919 -10.32180 -10.17613 -9.46214 -9.23576 -8.74789 -8.42961 -8.01315 -7.91761 -6.37943 -3.78611 0.80289 2.03399 2.31322 3.03448 3.06800 3.23266 3.28525 3.33264 3.95188 4.11995 4.23993 4.35140 4.57534 4.61016 4.70593 4.88936 4.95570 4.99821 5.11945 5.18372 5.20528 5.29528 5.31834 5.35844 5.41143 5.53538 5.55520 5.65142 5.69175 5.78309 5.84454 5.99758 6.06818 6.09321 6.10649 6.21613 6.30221 6.32292 6.57401 7.24384 7.32928 7.58726 7.68956 7.97071 8.10111 8.65328 9.21729 9.58414 10.10070 10.79761 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.002043 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.957969 B =13700.094475 C =14814.396271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.223 4.223 4 C -0.119 4.119 5 C -0.078 4.078 6 C 0.599 3.401 7 O -0.514 6.514 8 N -0.719 5.719 9 C 0.121 3.879 10 C -0.115 4.115 11 C 0.085 3.915 12 H 0.080 0.920 13 C -0.183 4.183 14 N -0.663 5.663 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 O -0.164 6.164 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.402 0.598 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.350 0.650 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.146 8.094 11.314 28.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 C -0.242 4.242 4 C -0.139 4.139 5 C -0.130 4.130 6 C 0.384 3.616 7 O -0.392 6.392 8 N -0.369 5.369 9 C -0.002 4.002 10 C -0.154 4.154 11 C -0.026 4.026 12 H 0.099 0.901 13 C -0.242 4.242 14 N -0.295 5.295 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 O -0.060 6.060 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.170 0.830 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.453 8.975 10.762 28.184 hybrid contribution 0.427 -1.094 -0.210 1.193 sum -24.026 7.881 10.551 27.399 Atomic orbital electron populations 1.20410 0.84553 1.04450 1.04005 1.22814 0.94276 0.84140 1.02562 1.21600 0.92372 0.99827 1.10388 1.21984 0.98689 0.93039 1.00209 1.22155 0.81774 0.94788 1.14240 1.16533 0.85978 0.81678 0.77364 1.90929 1.21952 1.76044 1.50229 1.45964 1.11017 1.05501 1.74454 1.21496 0.87145 0.87542 1.03989 1.21753 0.97892 0.93529 1.02218 1.21503 0.94596 0.92905 0.93640 0.90130 1.22512 1.01783 0.97684 1.02179 1.60208 1.01325 1.62370 1.05628 1.21699 0.89515 0.99020 0.97979 1.19828 0.83215 0.84688 0.89649 1.90525 1.67321 1.50547 1.38340 1.41857 1.07393 1.57915 1.12912 1.19652 0.91837 1.41414 0.89955 0.88001 1.25257 0.96721 0.97108 0.98883 1.69604 1.10720 1.44940 1.29116 0.85919 0.77911 0.78983 0.81404 1.19873 1.21002 1.19959 1.83983 1.16048 1.35003 1.70980 0.89548 0.90179 0.88959 0.82665 0.82141 0.76431 0.91548 0.88853 0.91420 0.91022 0.92300 0.92304 0.92216 0.83007 0.89588 0.93858 0.77479 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.41 36.01 0.37 0.08 16 2 C 0.01 0.12 7.31 -35.42 -0.26 -0.14 16 3 C -0.22 -1.87 10.77 -39.89 -0.43 -2.30 16 4 C -0.12 -1.29 10.62 -39.39 -0.42 -1.71 16 5 C -0.08 -0.93 7.13 -36.79 -0.26 -1.19 16 6 C 0.60 8.33 7.79 -12.86 -0.10 8.23 16 7 O -0.51 -9.10 16.86 5.20 0.09 -9.01 16 8 N -0.72 -8.22 5.55 -61.62 -0.34 -8.56 16 9 C 0.12 1.49 5.56 -4.04 -0.02 1.47 16 10 C -0.12 -1.13 5.01 -26.73 -0.13 -1.26 16 11 C 0.08 0.96 2.59 -67.71 -0.18 0.78 16 12 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 13 C -0.18 -1.77 9.16 37.16 0.34 -1.43 16 14 N -0.66 -10.30 5.33 -107.99 -0.58 -10.88 16 15 C 0.05 0.89 5.97 -4.97 -0.03 0.86 16 16 C 0.44 10.55 7.82 -10.99 -0.09 10.46 16 17 O -0.58 -16.07 15.78 5.54 0.09 -15.99 16 18 N -0.56 -14.55 5.29 -10.96 -0.06 -14.60 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 23 Si 0.93 21.47 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 O -0.16 -1.66 10.40 5.02 0.05 -1.61 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.40 3.52 8.23 -40.82 -0.34 3.19 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.49 7.75 -51.93 -0.40 1.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 39 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.35 5.66 8.17 -39.29 -0.32 5.34 16 42 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 43 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 44 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -34.74 387.95 -7.36 -42.09 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -6.72 Total: 14.76 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.44 Total: 5.69 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.25 Total: -58.23 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: 0.23 Total: -26.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.74 -7.36 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690831545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.268 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds