Wall clock time and date at job start Tue Mar 31 2020 14:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35122 * 125.61849 * 2 1 4 4 C 1.40362 * 107.11594 * 180.02562 * 3 2 1 5 5 C 1.36552 * 106.70641 * 0.02562 * 4 3 2 6 6 C 1.46659 * 125.98532 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00355 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99729 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99872 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.46840 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47704 * 54.99481 * 11 10 9 13 13 C 1.53000 * 109.47194 * 175.00077 * 11 10 9 14 14 N 1.46909 * 109.46754 * 294.99510 * 11 10 9 15 15 C 1.46902 * 110.99504 * 155.00241 * 14 11 10 16 16 C 1.50702 * 109.46730 * 180.02562 * 15 14 11 17 17 O 1.21295 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00164 * 179.97438 * 16 15 14 19 19 C 1.37102 * 120.00303 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99926 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00356 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47021 * 60.00019 * 23 21 19 25 25 H 1.48494 * 109.47353 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46876 * 300.00368 * 23 21 19 27 27 O 1.33932 * 125.61283 * 180.32995 * 2 1 3 28 28 H 1.08999 * 109.47210 * 89.99569 * 1 2 3 29 29 H 1.08995 * 109.47546 * 209.99749 * 1 2 3 30 30 H 1.09003 * 109.46991 * 329.99682 * 1 2 3 31 31 H 1.08002 * 126.44177 * 0.04379 * 3 2 1 32 32 H 1.07997 * 126.65138 * 179.97438 * 4 3 2 33 33 H 0.97000 * 119.99708 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47391 * 59.99686 * 9 8 6 35 35 H 1.09001 * 109.46813 * 299.99742 * 9 8 6 36 36 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 37 37 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 38 38 H 1.09004 * 109.47242 * 59.99175 * 13 11 10 39 39 H 1.09000 * 109.47237 * 179.97438 * 13 11 10 40 40 H 1.09002 * 109.46818 * 299.99696 * 13 11 10 41 41 H 1.00897 * 110.99647 * 278.95522 * 14 11 10 42 42 H 1.08996 * 109.47071 * 299.99790 * 15 14 11 43 43 H 1.08993 * 109.47443 * 60.00317 * 15 14 11 44 44 H 0.97003 * 120.00110 * 0.02562 * 18 16 15 45 45 H 0.96996 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6250 0.6530 -0.0006 5 6 3.5822 -0.7119 -0.0015 6 6 4.7414 -1.6104 -0.0029 7 8 5.8679 -1.1503 -0.0029 8 7 4.5588 -2.9457 -0.0043 9 6 5.7166 -3.8433 -0.0051 10 6 5.2359 -5.2958 -0.0072 11 6 6.4451 -6.2332 -0.0074 12 1 7.0928 -5.9910 0.8350 13 6 5.9676 -7.6815 0.1162 14 7 7.1915 -6.0691 -1.2621 15 6 8.5993 -6.4523 -1.0909 16 6 9.3316 -6.2705 -2.3955 17 8 8.7390 -5.8614 -3.3716 18 7 10.6450 -6.5614 -2.4773 19 6 11.3110 -6.3965 -3.6643 20 1 10.7833 -6.0331 -4.5336 21 6 12.6652 -6.6959 -3.7484 22 7 13.3076 -7.1376 -2.6905 23 14 13.5729 -6.4705 -5.3655 24 1 13.4933 -5.0478 -5.7837 25 1 14.9964 -6.8561 -5.1921 26 1 12.9504 -7.3279 -6.4061 27 8 2.2869 -1.0888 -0.0063 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.9613 2.1259 0.0007 32 1 4.5113 1.2701 -0.0011 33 1 3.6608 -3.3124 -0.0039 34 1 6.3186 -3.6607 0.8851 35 1 6.3186 -3.6589 -0.8949 36 1 4.6337 -5.4805 0.8824 37 1 4.6342 -5.4781 -0.8975 38 1 5.3199 -7.9237 -0.7264 39 1 6.8291 -8.3494 0.1156 40 1 5.4137 -7.8033 1.0470 41 1 6.7623 -6.5937 -2.0094 42 1 9.0568 -5.8233 -0.3272 43 1 8.6570 -7.4965 -0.7840 44 1 11.1190 -6.8881 -1.6966 45 1 14.2528 -7.3469 -2.7494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690831545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:44 Heat of formation + Delta-G solvation = -95.392670 kcal Electronic energy + Delta-G solvation = -26050.371145 eV Core-core repulsion = 22068.007015 eV Total energy + Delta-G solvation = -3982.364130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.73050 -40.64360 -40.19475 -38.33720 -36.17315 -35.82274 -34.28396 -33.33994 -33.06658 -32.49045 -30.11233 -28.00419 -27.94267 -25.80254 -24.54963 -22.92695 -22.64004 -21.85610 -21.22375 -21.00353 -19.93029 -19.39350 -17.74566 -17.58425 -17.10987 -16.90180 -16.64832 -16.44977 -16.31727 -15.95864 -15.57610 -15.35042 -15.17768 -14.55053 -14.33446 -14.13384 -14.07699 -14.02894 -13.98363 -13.70180 -13.55926 -13.49679 -13.10511 -12.85786 -12.78562 -12.67501 -12.44722 -12.30986 -12.22130 -12.11403 -11.75887 -11.50924 -11.47367 -11.08182 -10.35128 -10.29132 -10.02189 -9.48545 -9.24605 -8.47189 -5.96042 -0.04224 1.32094 1.38732 1.40347 1.51490 1.53230 2.05304 2.05362 2.16056 2.28620 2.94998 3.19958 3.55194 3.58748 3.84105 3.87628 3.92638 4.12047 4.21064 4.33299 4.45569 4.48742 4.52082 4.54097 4.58298 4.62151 4.71078 4.73375 4.74309 4.89608 4.93208 5.00306 5.13328 5.17246 5.17911 5.29807 5.35148 5.39825 5.44234 5.81999 5.91715 6.14512 6.40125 6.47094 6.59766 6.98321 7.11931 7.55871 8.11530 8.69971 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016663 B = 0.002043 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.957969 B =13700.094475 C =14814.396271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.026 3.974 3 C -0.232 4.232 4 C -0.125 4.125 5 C -0.109 4.109 6 C 0.594 3.406 7 O -0.567 6.567 8 N -0.704 5.704 9 C 0.125 3.875 10 C -0.103 4.103 11 C 0.084 3.916 12 H 0.085 0.915 13 C -0.175 4.175 14 N -0.679 5.679 15 C 0.067 3.933 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.270 1.270 27 O -0.167 6.167 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.184 0.816 32 H 0.157 0.843 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.345 0.655 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.477 7.828 12.361 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.250 4.250 4 C -0.145 4.145 5 C -0.161 4.161 6 C 0.382 3.618 7 O -0.448 6.448 8 N -0.355 5.355 9 C 0.002 3.998 10 C -0.141 4.141 11 C -0.026 4.026 12 H 0.104 0.896 13 C -0.234 4.234 14 N -0.312 5.312 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.200 1.200 25 H -0.193 1.193 26 H -0.195 1.195 27 O -0.064 6.064 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.201 0.799 32 H 0.174 0.826 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.164 0.836 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.824 8.670 11.848 30.578 hybrid contribution 1.004 -0.944 -0.506 1.468 sum -25.820 7.725 11.342 29.240 Atomic orbital electron populations 1.20680 0.81157 1.06141 1.05390 1.23753 0.95971 0.83364 0.99577 1.21939 0.91030 1.01477 1.10563 1.22242 1.00052 0.92914 0.99341 1.21761 0.82169 0.94704 1.17463 1.16839 0.86020 0.82419 0.76535 1.90884 1.24026 1.76994 1.52880 1.45841 1.11587 1.04775 1.73278 1.21355 0.87234 0.89447 1.01728 1.21704 0.97516 0.90905 1.04013 1.21632 0.94745 0.94630 0.91605 0.89648 1.22427 1.01735 0.95705 1.03551 1.60208 1.00572 1.62762 1.07620 1.21530 0.90135 1.00816 0.94089 1.20970 0.82675 0.82552 0.91422 1.90489 1.68070 1.51900 1.40619 1.41936 1.08210 1.58575 1.12397 1.19626 0.92861 1.43513 0.90502 0.90455 1.26049 0.96832 0.96167 1.02288 1.69665 1.11201 1.44669 1.30519 0.84990 0.77221 0.78724 0.77394 1.19968 1.19321 1.19542 1.83971 1.15318 1.35942 1.71174 0.88093 0.89157 0.86599 0.79882 0.82563 0.74674 0.92112 0.92936 0.87995 0.90679 0.92136 0.93070 0.89760 0.83613 0.88299 0.91364 0.76984 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.41 71.24 0.74 0.42 16 2 C 0.03 0.36 7.31 24.97 0.18 0.54 16 3 C -0.23 -3.51 10.77 22.07 0.24 -3.27 16 4 C -0.12 -2.75 10.62 22.39 0.24 -2.51 16 5 C -0.11 -2.67 7.13 24.08 0.17 -2.50 16 6 C 0.59 17.37 7.79 86.44 0.67 18.04 16 7 O -0.57 -21.52 16.86 -4.32 -0.07 -21.59 16 8 N -0.70 -16.29 5.55 -467.10 -2.59 -18.88 16 9 C 0.13 3.15 5.56 86.38 0.48 3.63 16 10 C -0.10 -1.84 5.01 30.59 0.15 -1.69 16 11 C 0.08 1.76 2.59 44.91 0.12 1.87 16 12 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 13 C -0.18 -2.94 9.16 71.98 0.66 -2.28 16 14 N -0.68 -20.99 5.33 -495.57 -2.64 -23.63 16 15 C 0.07 2.32 5.97 85.56 0.51 2.83 16 16 C 0.44 21.43 7.82 87.66 0.69 22.12 16 17 O -0.62 -35.76 15.78 -3.08 -0.05 -35.81 16 18 N -0.57 -30.41 5.29 -306.99 -1.62 -32.03 16 19 C -0.34 -19.65 9.68 84.04 0.81 -18.84 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -50.74 13.05 21.66 0.28 -50.45 16 23 Si 0.99 44.15 29.55 68.60 2.03 46.18 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 O -0.17 -3.23 10.40 -4.96 -0.05 -3.28 16 28 H 0.10 0.21 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.42 6.94 8.23 -92.71 -0.76 6.18 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.05 1.77 7.75 -2.39 -0.02 1.76 16 36 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 39 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.34 11.19 8.17 -89.70 -0.73 10.46 16 42 H 0.10 3.21 8.05 -2.39 -0.02 3.19 16 43 H 0.07 2.06 7.43 -2.39 -0.02 2.04 16 44 H 0.40 19.89 7.90 -92.71 -0.73 19.16 16 45 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -79.40 387.95 0.22 -79.18 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: -1.19 Total: 42.22 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 6.13 Total: 18.10 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.57 Total: -125.00 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -0.17 Total: -60.68 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -79.40 0.22 -79.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690831545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.212 kcal (2) G-P(sol) polarization free energy of solvation -79.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds