Wall clock time and date at job start Tue Mar 31 2020 14:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 N 1.46895 * 109.47236 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99859 * 66.04844 * 10 9 8 12 12 C 1.46902 * 111.00169 * 189.99790 * 10 9 8 13 13 C 1.50701 * 109.47065 * 170.00130 * 12 10 9 14 14 O 1.21293 * 120.00197 * 0.02562 * 13 12 10 15 15 N 1.34775 * 119.99956 * 180.02562 * 13 12 10 16 16 C 1.37096 * 120.00356 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99662 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00598 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00464 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46851 * 90.00385 * 20 18 16 22 22 H 1.48491 * 109.47355 * 210.00641 * 20 18 16 23 23 H 1.48505 * 109.46820 * 330.00668 * 20 18 16 24 24 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 25 25 C 1.50701 * 125.80425 * 180.02562 * 24 4 3 26 26 O 1.33661 * 108.39213 * 359.77210 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07998 * 127.02387 * 359.93891 * 3 2 1 31 31 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 33 33 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 34 34 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 35 35 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 36 36 H 1.08999 * 109.46819 * 59.99828 * 11 10 9 37 37 H 1.09002 * 109.47398 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47284 * 300.00103 * 11 10 9 39 39 H 1.08991 * 109.47609 * 290.00509 * 12 10 9 40 40 H 1.09003 * 109.47073 * 50.00823 * 12 10 9 41 41 H 0.96998 * 120.00133 * 0.02562 * 15 13 12 42 42 H 0.96992 * 120.00191 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46794 * 89.99963 * 25 24 4 44 44 H 1.08998 * 109.46574 * 209.99835 * 25 24 4 45 45 H 1.08994 * 109.46424 * 329.99461 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 7 6.9095 5.8554 -0.0021 11 6 7.6555 5.6786 -1.2552 12 6 6.6074 7.2733 0.2351 13 6 7.8904 8.0274 0.4722 14 8 8.9521 7.4415 0.4457 15 7 7.8581 9.3530 0.7137 16 6 9.0252 10.0391 0.9299 17 1 9.9705 9.5173 0.9063 18 6 8.9920 11.4057 1.1783 19 7 7.8418 12.0407 1.2066 20 14 10.5823 12.3406 1.4723 21 1 11.1091 12.8406 0.1770 22 1 10.3215 13.4889 2.3770 23 1 11.5805 11.4354 2.0964 24 6 3.5791 -0.7582 0.0015 25 6 4.7391 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0065 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9596 2.1230 -0.0009 31 1 3.9576 3.1935 -0.0005 32 1 6.6347 3.3335 0.8889 33 1 6.6339 3.3328 -0.8910 34 1 5.0960 5.2775 -0.8919 35 1 5.0964 5.2787 0.8881 36 1 7.0335 5.9882 -2.0951 37 1 8.5593 6.2875 -1.2291 38 1 7.9270 4.6294 -1.3716 39 1 6.0983 7.6869 -0.6354 40 1 5.9643 7.3663 1.1103 41 1 7.0090 9.8215 0.7352 42 1 7.8185 12.9946 1.3804 43 1 5.0180 -1.9514 1.0310 44 1 4.4509 -2.6375 -0.5104 45 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690923691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:29 Heat of formation + Delta-G solvation = -55.539151 kcal Electronic energy + Delta-G solvation = -26084.331508 eV Core-core repulsion = 22103.695556 eV Total energy + Delta-G solvation = -3980.635952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.95090 -39.61316 -38.62081 -36.78689 -34.70650 -33.83033 -33.47860 -33.21664 -31.25048 -30.16495 -29.25122 -27.69481 -25.84999 -25.14581 -24.08369 -22.97368 -21.38695 -21.11813 -19.70323 -19.16403 -17.84769 -17.54524 -16.85798 -16.25276 -16.11886 -15.86495 -15.71617 -14.98982 -14.81166 -14.59580 -14.25223 -13.98997 -13.92465 -13.72613 -13.58996 -13.43870 -13.24082 -13.19186 -13.00250 -12.95637 -12.77444 -12.12579 -11.94324 -11.82960 -11.51896 -11.40158 -11.26856 -11.04447 -10.93846 -10.38490 -10.21737 -10.14870 -10.11061 -9.47556 -9.19535 -8.72511 -8.47611 -7.98586 -7.88622 -6.41518 -3.82174 1.06307 1.64130 2.33414 2.96264 3.16869 3.18232 3.26997 3.33271 3.90393 4.03728 4.08824 4.28088 4.43536 4.50313 4.79749 4.83548 4.90956 4.97092 4.99663 5.08683 5.13107 5.20248 5.23523 5.25077 5.38859 5.40365 5.57182 5.64161 5.69763 5.82888 5.85640 5.90997 5.93364 5.96797 6.02474 6.26059 6.29547 6.56440 6.69965 7.19868 7.31311 7.36084 7.55787 8.06735 8.06803 8.62130 9.18613 9.54600 10.06542 10.76266 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.001783 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.896415 B =15702.812914 C =16386.482637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.013 4.013 3 C -0.187 4.187 4 C -0.243 4.243 5 C 0.590 3.410 6 O -0.540 6.540 7 N -0.721 5.721 8 C 0.123 3.877 9 C 0.044 3.956 10 N -0.515 5.515 11 C 0.018 3.982 12 C 0.047 3.953 13 C 0.444 3.556 14 O -0.576 6.576 15 N -0.564 5.564 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.078 3.922 25 C -0.083 4.083 26 O -0.175 6.175 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.156 0.844 31 H 0.399 0.601 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.015 0.985 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 -22.188 -3.802 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.206 4.206 4 C -0.247 4.247 5 C 0.378 3.622 6 O -0.419 6.419 7 N -0.373 5.373 8 C -0.001 4.001 9 C -0.085 4.085 10 N -0.239 5.239 11 C -0.130 4.130 12 C -0.084 4.084 13 C 0.229 3.771 14 O -0.460 6.460 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C 0.025 3.975 25 C -0.139 4.139 26 O -0.072 6.072 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.174 0.826 31 H 0.233 0.767 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.034 0.966 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.141 -23.184 -3.391 28.452 hybrid contribution -0.877 1.706 -0.466 1.974 sum -17.017 -21.478 -3.857 27.673 Atomic orbital electron populations 1.20350 0.84646 1.04311 1.03747 1.22246 0.94019 0.83694 1.06201 1.22579 0.90744 0.99514 1.07785 1.21127 0.93780 0.93337 1.16495 1.17136 0.87356 0.81691 0.76019 1.90774 1.28765 1.71788 1.50535 1.45704 1.10163 1.05837 1.75574 1.21351 0.85951 0.89153 1.03600 1.22251 0.92478 0.92541 1.01182 1.61443 1.19088 1.07066 1.36291 1.22632 0.99966 1.02588 0.87798 1.21869 0.97497 0.87857 1.01207 1.19706 0.89981 0.82877 0.84533 1.90494 1.31444 1.67897 1.56149 1.41859 1.09843 1.06182 1.62234 1.19703 0.87435 0.90565 1.45055 0.87883 1.25261 0.98491 0.96808 0.97431 1.69610 1.24719 1.10338 1.49734 0.85853 0.81322 0.78852 0.78244 1.20449 1.20948 1.19392 1.22810 0.82860 0.94078 0.97737 1.20634 0.92099 0.96619 1.04528 1.83707 1.16207 1.35651 1.71665 0.89913 0.89075 0.90401 0.82603 0.76725 0.90091 0.91043 0.94567 0.90279 0.96636 0.88359 0.91812 0.93350 0.89318 0.77512 0.91902 0.89237 0.90425 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.40 36.01 0.37 0.08 16 2 C -0.01 -0.10 7.28 -35.74 -0.26 -0.36 16 3 C -0.19 -1.54 10.48 -37.45 -0.39 -1.94 16 4 C -0.24 -2.62 6.31 -103.28 -0.65 -3.27 16 5 C 0.59 7.42 7.81 -12.54 -0.10 7.33 16 6 O -0.54 -8.38 14.84 5.27 0.08 -8.30 16 7 N -0.72 -7.66 5.55 -61.40 -0.34 -8.00 16 8 C 0.12 1.52 5.60 -4.05 -0.02 1.50 16 9 C 0.04 0.54 5.07 -3.83 -0.02 0.52 16 10 N -0.51 -8.47 4.50 -244.37 -1.10 -9.57 16 11 C 0.02 0.29 8.96 60.07 0.54 0.83 16 12 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 13 C 0.44 10.40 7.47 -10.99 -0.08 10.32 16 14 O -0.58 -15.47 13.91 5.55 0.08 -15.40 16 15 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 16 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 20 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.08 0.79 7.37 -34.97 -0.26 0.54 16 25 C -0.08 -0.67 9.89 36.01 0.36 -0.32 16 26 O -0.18 -1.68 10.52 7.64 0.08 -1.60 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.16 0.87 7.74 -52.49 -0.41 0.47 16 31 H 0.40 3.12 7.64 -40.82 -0.31 2.81 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 34 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 38 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 39 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 41 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 1.06 6.48 -51.93 -0.34 0.72 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -34.16 379.00 -7.13 -41.28 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.49 Total: 9.77 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -0.78 Total: 8.07 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.77 Total: -55.57 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.24 Total: -25.29 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.16 -7.13 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690923691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.256 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds