Wall clock time and date at job start Tue Mar 31 2020 14:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34180 * 125.43747 * 2 1 4 4 C 1.47019 * 105.95198 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19008 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99934 * 180.02562 * 5 4 3 7 7 N 1.34780 * 119.99915 * 0.02562 * 5 4 3 8 8 C 1.46495 * 119.99858 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47102 * 179.97438 * 8 7 5 10 10 N 1.46895 * 109.47236 * 179.97438 * 9 8 7 11 11 C 1.46903 * 110.99859 * 66.04844 * 10 9 8 12 12 C 1.46902 * 111.00169 * 189.99790 * 10 9 8 13 13 C 1.50701 * 109.47065 * 170.00130 * 12 10 9 14 14 O 1.21293 * 120.00197 * 0.02562 * 13 12 10 15 15 N 1.34775 * 119.99956 * 180.02562 * 13 12 10 16 16 C 1.37096 * 120.00356 * 179.97438 * 15 13 12 17 17 H 1.08000 * 119.99662 * 0.02562 * 16 15 13 18 18 C 1.38948 * 120.00598 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99820 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00464 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46851 * 90.00385 * 20 18 16 22 22 H 1.48491 * 109.47355 * 210.00641 * 20 18 16 23 23 H 1.48505 * 109.46820 * 330.00668 * 20 18 16 24 24 C 1.36413 * 105.62051 * 359.97438 * 4 3 2 25 25 C 1.50701 * 125.80425 * 180.02562 * 24 4 3 26 26 O 1.33661 * 108.39213 * 359.77210 * 24 4 3 27 27 H 1.09002 * 109.47152 * 90.00216 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.00316 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.00297 * 1 2 3 30 30 H 1.07998 * 127.02387 * 359.93891 * 3 2 1 31 31 H 0.97002 * 119.99893 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47061 * 299.99457 * 8 7 5 33 33 H 1.08998 * 109.47445 * 59.99668 * 8 7 5 34 34 H 1.09001 * 109.47401 * 299.99954 * 9 8 7 35 35 H 1.09004 * 109.46885 * 60.00086 * 9 8 7 36 36 H 1.08999 * 109.46819 * 59.99828 * 11 10 9 37 37 H 1.09002 * 109.47398 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47284 * 300.00103 * 11 10 9 39 39 H 1.08991 * 109.47609 * 290.00509 * 12 10 9 40 40 H 1.09003 * 109.47073 * 50.00823 * 12 10 9 41 41 H 0.96998 * 120.00133 * 0.02562 * 15 13 12 42 42 H 0.96992 * 120.00191 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.46794 * 89.99963 * 25 24 4 44 44 H 1.08998 * 109.46574 * 209.99835 * 25 24 4 45 45 H 1.08994 * 109.46424 * 329.99461 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9891 0.8666 0.0005 7 7 4.8243 2.7581 -0.0001 8 6 6.0484 3.5629 -0.0009 9 6 5.6821 5.0483 -0.0019 10 7 6.9095 5.8554 -0.0021 11 6 7.6555 5.6786 -1.2552 12 6 6.6074 7.2733 0.2351 13 6 7.8904 8.0274 0.4722 14 8 8.9521 7.4415 0.4457 15 7 7.8581 9.3530 0.7137 16 6 9.0252 10.0391 0.9299 17 1 9.9705 9.5173 0.9063 18 6 8.9920 11.4057 1.1783 19 7 7.8418 12.0407 1.2066 20 14 10.5823 12.3406 1.4723 21 1 11.1091 12.8406 0.1770 22 1 10.3215 13.4889 2.3770 23 1 11.5805 11.4354 2.0964 24 6 3.5791 -0.7582 0.0015 25 6 4.7391 -1.7202 0.0030 26 8 2.2852 -1.0935 0.0065 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5139 30 1 1.9596 2.1230 -0.0009 31 1 3.9576 3.1935 -0.0005 32 1 6.6347 3.3335 0.8889 33 1 6.6339 3.3328 -0.8910 34 1 5.0960 5.2775 -0.8919 35 1 5.0964 5.2787 0.8881 36 1 7.0335 5.9882 -2.0951 37 1 8.5593 6.2875 -1.2291 38 1 7.9270 4.6294 -1.3716 39 1 6.0983 7.6869 -0.6354 40 1 5.9643 7.3663 1.1103 41 1 7.0090 9.8215 0.7352 42 1 7.8185 12.9946 1.3804 43 1 5.0180 -1.9514 1.0310 44 1 4.4509 -2.6375 -0.5104 45 1 5.5871 -1.2674 -0.5107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690923691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:28 Heat of formation + Delta-G solvation = -81.577227 kcal Electronic energy + Delta-G solvation = -26085.460603 eV Core-core repulsion = 22103.695556 eV Total energy + Delta-G solvation = -3981.765048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.61978 -40.65578 -40.26353 -38.17722 -36.03401 -35.55175 -34.14670 -33.85680 -33.26501 -31.00762 -30.11167 -29.06856 -27.11265 -26.28970 -25.32970 -23.87673 -22.43670 -21.95983 -20.97331 -20.54137 -19.84494 -18.32858 -17.72621 -17.54213 -17.25001 -16.84776 -16.72650 -16.51226 -16.22023 -15.99275 -15.51636 -15.36005 -15.04321 -14.78844 -14.44845 -14.37695 -14.14862 -14.06097 -13.81097 -13.76127 -13.47059 -13.44439 -13.22932 -13.03357 -12.93517 -12.58142 -12.55849 -12.48583 -12.39343 -12.16054 -12.09256 -11.44960 -11.15289 -10.84117 -10.28261 -10.14472 -9.98208 -9.37066 -9.24101 -8.45288 -5.93397 0.28195 1.02389 1.38465 1.42309 1.54779 1.68936 2.03939 2.07728 2.27557 2.31375 2.91619 3.21793 3.43173 3.49132 3.73055 3.80696 3.90317 4.06173 4.25599 4.26581 4.36605 4.44667 4.47283 4.53777 4.54510 4.58565 4.63892 4.64374 4.69038 4.75468 4.84032 4.91991 4.96628 5.04405 5.20123 5.21991 5.33859 5.42794 5.44979 5.85597 6.04078 6.05462 6.16488 6.50340 6.62963 7.15211 7.16664 7.58890 8.15379 8.72069 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030464 B = 0.001783 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.896415 B =15702.812914 C =16386.482637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.192 4.192 4 C -0.265 4.265 5 C 0.586 3.414 6 O -0.579 6.579 7 N -0.706 5.706 8 C 0.132 3.868 9 C 0.053 3.947 10 N -0.539 5.539 11 C 0.024 3.976 12 C 0.060 3.940 13 C 0.440 3.560 14 O -0.616 6.616 15 N -0.574 5.574 16 C -0.331 4.331 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.275 1.275 24 C 0.066 3.934 25 C -0.081 4.081 26 O -0.183 6.183 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.183 0.817 31 H 0.415 0.585 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.491 -22.030 -3.933 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.211 4.211 4 C -0.270 4.270 5 C 0.375 3.625 6 O -0.460 6.460 7 N -0.359 5.359 8 C 0.007 3.993 9 C -0.075 4.075 10 N -0.264 5.264 11 C -0.124 4.124 12 C -0.071 4.071 13 C 0.227 3.773 14 O -0.502 6.502 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.095 0.905 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.200 1.200 24 C 0.013 3.987 25 C -0.137 4.137 26 O -0.080 6.080 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.102 0.898 30 H 0.200 0.800 31 H 0.252 0.748 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.893 -23.011 -3.527 29.982 hybrid contribution -0.093 1.567 -0.439 1.630 sum -18.986 -21.444 -3.966 28.914 Atomic orbital electron populations 1.20552 0.81834 1.05586 1.04964 1.23038 0.95543 0.83067 1.04771 1.22879 0.89272 1.01037 1.07879 1.21172 0.94237 0.93699 1.17886 1.17469 0.87498 0.82208 0.75340 1.90752 1.30311 1.72568 1.52409 1.45504 1.10419 1.05196 1.74744 1.21118 0.86364 0.89808 1.01972 1.22236 0.90891 0.91020 1.03314 1.61327 1.21580 1.06867 1.36600 1.22472 0.98783 1.02387 0.88738 1.21740 0.94113 0.87834 1.03380 1.20828 0.91749 0.82406 0.82316 1.90477 1.33837 1.68629 1.57241 1.41918 1.09280 1.06973 1.63022 1.19637 0.87656 0.91506 1.47312 0.90461 1.26002 1.01669 0.97002 0.96600 1.69663 1.26050 1.10833 1.49552 0.84950 0.77496 0.77585 0.78443 1.19681 1.19527 1.19976 1.23114 0.83554 0.94410 0.97642 1.20627 0.91104 0.97068 1.04927 1.83723 1.16016 1.36590 1.71658 0.88597 0.87145 0.89773 0.79960 0.74781 0.92424 0.92190 0.92019 0.88306 0.94635 0.92474 0.90850 0.90873 0.86693 0.76941 0.91341 0.88668 0.88305 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.40 71.24 0.74 0.38 16 2 C -0.02 -0.22 7.28 24.76 0.18 -0.04 16 3 C -0.19 -2.75 10.48 23.65 0.25 -2.50 16 4 C -0.27 -5.54 6.31 -18.99 -0.12 -5.66 16 5 C 0.59 14.60 7.81 86.65 0.68 15.28 16 6 O -0.58 -18.54 14.84 -4.05 -0.06 -18.60 16 7 N -0.71 -13.97 5.55 -466.43 -2.59 -16.56 16 8 C 0.13 3.12 5.60 86.38 0.48 3.61 16 9 C 0.05 1.14 5.07 86.30 0.44 1.58 16 10 N -0.54 -16.93 4.50 -927.05 -4.17 -21.10 16 11 C 0.02 0.77 8.96 127.69 1.14 1.92 16 12 C 0.06 1.99 5.45 85.56 0.47 2.46 16 13 C 0.44 20.75 7.47 87.66 0.66 21.40 16 14 O -0.62 -34.14 13.91 -3.07 -0.04 -34.18 16 15 N -0.57 -29.23 5.29 -306.99 -1.62 -30.85 16 16 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 17 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 20 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.07 1.32 7.37 25.26 0.19 1.50 16 25 C -0.08 -1.34 9.89 71.24 0.70 -0.63 16 26 O -0.18 -3.27 10.52 4.43 0.05 -3.23 16 27 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.08 0.33 8.14 -2.38 -0.02 0.32 16 30 H 0.18 1.42 7.74 -2.91 -0.02 1.39 16 31 H 0.42 5.35 7.64 -92.71 -0.71 4.64 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.57 6.55 -2.39 -0.02 1.56 16 34 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 35 H 0.10 1.77 7.93 -2.39 -0.02 1.75 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 2.33 5.82 -2.39 -0.01 2.31 16 38 H 0.07 2.16 6.47 -2.39 -0.02 2.15 16 39 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 40 H 0.12 3.23 7.93 -2.39 -0.02 3.21 16 41 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 42 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.09 1.88 6.48 -2.39 -0.02 1.87 16 Total: -1.00 -76.60 379.00 0.55 -76.05 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.41 Total: 31.33 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 7.08 Total: 21.05 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -8.10 Total: -117.55 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -0.06 Total: -56.01 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -76.60 0.55 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690923691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.527 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds