Wall clock time and date at job start Tue Mar 31 2020 14:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48499 * 109.47038 * 239.99951 * 3 2 1 5 5 H 1.48505 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47179 * 119.99846 * 3 2 1 7 7 C 1.38811 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99923 * 159.25907 * 7 2 1 9 9 N 1.36938 * 119.99700 * 339.26583 * 7 2 1 10 10 C 1.46498 * 120.00040 * 321.83694 * 9 7 2 11 11 C 1.52994 * 109.47155 * 269.99996 * 10 9 7 12 12 O 1.42894 * 109.47066 * 65.00451 * 11 10 9 13 13 C 1.46500 * 119.99943 * 141.83793 * 9 7 2 14 14 H 1.08997 * 109.50022 * 184.48527 * 13 9 7 15 15 C 1.53046 * 109.52362 * 64.40546 * 13 9 7 16 16 C 1.53035 * 109.53773 * 178.66637 * 15 13 9 17 17 C 1.52756 * 109.38493 * 61.24291 * 16 15 13 18 18 N 1.46929 * 109.00924 * 305.58602 * 17 16 15 19 19 C 1.34768 * 120.63477 * 233.58827 * 18 17 16 20 20 O 1.21278 * 120.00632 * 179.71907 * 19 18 17 21 21 C 1.50707 * 119.99815 * 359.71158 * 19 18 17 22 22 C 1.50699 * 109.47283 * 179.97438 * 21 19 18 23 23 C 1.41381 * 126.79854 * 124.99977 * 22 21 19 24 24 C 1.35446 * 103.98523 * 180.21147 * 23 22 21 25 25 O 1.34045 * 106.44650 * 359.64860 * 24 23 22 26 26 N 1.20916 * 111.56526 * 0.38427 * 25 24 23 27 27 C 1.46931 * 118.73704 * 53.30770 * 18 17 16 28 28 H 0.96998 * 119.99666 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47545 * 30.00491 * 10 9 7 30 30 H 1.09009 * 109.47095 * 150.00054 * 10 9 7 31 31 H 1.09008 * 109.47198 * 184.99752 * 11 10 9 32 32 H 1.08994 * 109.47399 * 305.00043 * 11 10 9 33 33 H 0.96704 * 114.00507 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.45886 * 298.69253 * 15 13 9 35 35 H 1.09004 * 109.45631 * 58.66145 * 15 13 9 36 36 H 1.09000 * 109.49342 * 181.31987 * 16 15 13 37 37 H 1.09003 * 109.49912 * 301.38241 * 16 15 13 38 38 H 1.09003 * 109.51234 * 185.70683 * 17 16 15 39 39 H 1.09000 * 109.43287 * 65.41999 * 17 16 15 40 40 H 1.09000 * 109.47054 * 60.00519 * 21 19 18 41 41 H 1.09000 * 109.47357 * 300.00832 * 21 19 18 42 42 H 1.08000 * 128.00813 * 359.94938 * 23 22 21 43 43 H 1.08000 * 126.77887 * 179.74935 * 24 23 22 44 44 H 1.08996 * 109.58690 * 66.43321 * 27 18 17 45 45 H 1.09000 * 109.58358 * 186.86090 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0378 -1.2325 -0.3307 9 7 1.3922 -2.3494 0.4209 10 6 0.4659 -2.3090 1.5552 11 6 1.2381 -2.5539 2.8531 12 8 2.1526 -1.4782 3.0734 13 6 1.6571 -3.6173 -0.2637 14 1 1.0210 -4.3969 0.1554 15 6 3.1266 -4.0019 -0.0772 16 6 3.3958 -5.3427 -0.7640 17 6 3.1162 -5.2112 -2.2600 18 7 1.7519 -4.6994 -2.4487 19 6 0.8754 -5.3545 -3.2354 20 8 -0.2494 -4.9246 -3.3791 21 6 1.2931 -6.6213 -3.9367 22 6 0.1378 -7.1519 -4.7459 23 6 0.1383 -7.4509 -6.1278 24 6 -1.1216 -7.8855 -6.3691 25 8 -1.7707 -7.8373 -5.1972 26 7 -1.0581 -7.4261 -4.3111 27 6 1.3594 -3.4631 -1.7585 28 1 -0.4849 0.8401 -0.0004 29 1 -0.0147 -1.3317 1.5972 30 1 -0.2928 -3.0820 1.4325 31 1 0.5382 -2.6122 3.6868 32 1 1.7904 -3.4904 2.7762 33 1 2.6771 -1.5669 3.8810 34 1 3.7618 -3.2338 -0.5184 35 1 3.3471 -4.0884 0.9868 36 1 4.4368 -5.6273 -0.6109 37 1 2.7437 -6.1062 -0.3398 38 1 3.2090 -6.1879 -2.7350 39 1 3.8311 -4.5178 -2.7030 40 1 1.5901 -7.3650 -3.1973 41 1 2.1338 -6.4105 -4.5977 42 1 0.9532 -7.3513 -6.8295 43 1 -1.5235 -8.2089 -7.3179 44 1 1.9281 -2.6243 -2.1597 45 1 0.2935 -3.2869 -1.9025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692231311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:43 Heat of formation + Delta-G solvation = 8.503248 kcal Electronic energy + Delta-G solvation = -28382.017155 eV Core-core repulsion = 24404.158290 eV Total energy + Delta-G solvation = -3977.858865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.94785 -39.84098 -37.51243 -36.14532 -34.64155 -34.54291 -32.25692 -31.77397 -31.19206 -30.15186 -28.99727 -27.13719 -24.86323 -24.07516 -23.18418 -22.35569 -21.69844 -20.57504 -19.75800 -18.63566 -17.78594 -17.58713 -16.81889 -16.51005 -16.34329 -15.59907 -15.33406 -14.75682 -14.62484 -14.36453 -13.88814 -13.77618 -13.55249 -13.42846 -13.09067 -12.92554 -12.84876 -12.55812 -12.48284 -12.06699 -11.87140 -11.28571 -11.25084 -11.16646 -10.83623 -10.70573 -10.59684 -10.44856 -10.22892 -10.07916 -9.99643 -9.83995 -9.66888 -9.58451 -9.40014 -9.03741 -8.35241 -8.17045 -6.47701 -5.66442 -3.24341 1.50613 2.16847 2.91134 3.22322 3.36359 3.46601 3.52419 3.57869 4.06645 4.41082 4.59305 4.75941 4.97413 5.02797 5.10023 5.18085 5.21876 5.26933 5.36199 5.37763 5.47497 5.54895 5.61625 5.72337 5.84702 5.91304 5.96324 6.09578 6.13809 6.20064 6.33930 6.35950 6.57648 6.65383 6.71065 6.80393 6.88858 7.10593 7.15399 7.71865 7.79334 7.92856 8.30273 8.49427 8.52442 8.67954 9.27594 9.91910 10.47496 11.34969 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.003286 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.701676 B = 8519.604118 C = 8921.680552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.021 3.979 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.055 0.945 9 N -0.567 5.567 10 C 0.143 3.857 11 C 0.062 3.938 12 O -0.541 6.541 13 C 0.166 3.834 14 H 0.047 0.953 15 C -0.127 4.127 16 C -0.133 4.133 17 C 0.108 3.892 18 N -0.607 5.607 19 C 0.510 3.490 20 O -0.528 6.528 21 C -0.062 4.062 22 C 0.025 3.975 23 C -0.230 4.230 24 C -0.068 4.068 25 O 0.104 5.896 26 N -0.334 5.334 27 C 0.111 3.889 28 H 0.253 0.747 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.348 0.652 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.170 0.830 43 H 0.214 0.786 44 H 0.076 0.924 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 -16.978 -7.680 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.728 3.272 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.073 0.927 9 N -0.286 5.286 10 C 0.016 3.984 11 C -0.018 4.018 12 O -0.342 6.342 13 C 0.057 3.943 14 H 0.065 0.935 15 C -0.167 4.167 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.342 5.342 19 C 0.296 3.704 20 O -0.404 6.404 21 C -0.103 4.103 22 C -0.135 4.135 23 C -0.251 4.251 24 C -0.149 4.149 25 O 0.034 5.966 26 N -0.035 5.035 27 C -0.012 4.012 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.190 0.810 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.188 0.812 43 H 0.231 0.769 44 H 0.094 0.906 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.069 -16.274 -7.122 18.224 hybrid contribution 1.437 0.671 -0.121 1.590 sum 5.506 -15.603 -7.243 18.062 Atomic orbital electron populations 1.69966 1.05601 1.25678 1.51987 1.25075 0.94845 0.98520 0.99481 0.86476 0.79204 0.83578 0.77986 1.21182 1.21986 1.20773 1.18663 0.93260 0.85159 1.40117 0.92694 1.43647 1.51398 1.03108 1.30483 1.21038 0.90508 1.03345 0.83486 1.23048 0.91273 0.88457 0.99058 1.86882 1.55697 1.46461 1.45175 1.20660 0.93222 0.89612 0.90777 0.93492 1.22013 0.99996 0.94857 0.99789 1.21859 1.01022 0.99412 0.94882 1.21641 0.83703 0.98929 0.97294 1.48314 1.12116 1.26768 1.46954 1.20176 0.85353 0.85067 0.79838 1.90754 1.19695 1.67523 1.62448 1.20057 0.94745 0.96519 0.98946 1.22938 0.94096 1.03224 0.93209 1.22673 0.99334 1.07354 0.95740 1.25970 0.92710 1.03642 0.92580 1.84888 1.36875 1.60976 1.13833 1.73918 1.03704 1.13165 1.12664 1.22278 1.02413 0.83423 0.93088 0.93680 0.88025 0.94454 0.96346 0.96058 0.80975 0.91628 0.92493 0.91386 0.92169 0.90697 0.91295 0.87292 0.86984 0.81209 0.76916 0.90563 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 11.47 55.49 0.64 -25.46 16 2 C 0.02 0.58 4.97 -17.43 -0.09 0.50 16 3 Si 0.90 22.38 29.60 -169.99 -5.03 17.35 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.47 7.49 -15.06 -0.11 -6.58 16 8 H 0.06 1.48 7.07 -52.49 -0.37 1.11 16 9 N -0.57 -13.72 2.34 -165.53 -0.39 -14.11 16 10 C 0.14 3.39 5.70 -4.05 -0.02 3.36 16 11 C 0.06 1.24 7.39 37.15 0.27 1.52 16 12 O -0.54 -11.50 13.13 -35.23 -0.46 -11.97 16 13 C 0.17 3.41 2.79 -67.81 -0.19 3.22 16 14 H 0.05 0.97 7.77 -51.93 -0.40 0.57 16 15 C -0.13 -2.17 5.18 -26.69 -0.14 -2.31 16 16 C -0.13 -1.69 6.06 -26.84 -0.16 -1.85 16 17 C 0.11 1.30 6.31 -3.93 -0.02 1.28 16 18 N -0.61 -10.04 2.98 -173.03 -0.52 -10.56 16 19 C 0.51 8.75 7.69 -10.99 -0.08 8.66 16 20 O -0.53 -11.75 15.01 5.56 0.08 -11.67 16 21 C -0.06 -0.74 4.64 -29.03 -0.13 -0.87 16 22 C 0.02 0.34 6.10 -82.10 -0.50 -0.17 16 23 C -0.23 -2.24 11.12 -39.38 -0.44 -2.68 16 24 C -0.07 -0.60 12.30 29.74 0.37 -0.23 16 25 O 0.10 1.36 11.20 17.17 0.19 1.55 16 26 N -0.33 -5.32 11.47 33.42 0.38 -4.93 16 27 C 0.11 2.32 5.71 -3.71 -0.02 2.29 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.10 2.79 5.53 -51.93 -0.29 2.50 16 30 H 0.04 0.84 7.89 -51.92 -0.41 0.43 16 31 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.35 5.41 9.12 45.56 0.42 5.83 16 34 H 0.07 1.21 7.22 -51.93 -0.38 0.84 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.65 5.93 -51.93 -0.31 0.34 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.11 1.07 7.68 -51.93 -0.40 0.67 16 41 H 0.11 0.94 7.95 -51.93 -0.41 0.53 16 42 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.08 1.73 7.40 -51.93 -0.38 1.34 16 45 H 0.09 2.18 7.00 -51.93 -0.36 1.82 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -36.27 365.82 -6.68 -42.95 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.82 Total: 5.20 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.28 Total: 6.13 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.12 Total: -55.06 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.19 Total: -22.08 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.27 -6.68 -42.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692231311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.457 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds