Wall clock time and date at job start Tue Mar 31 2020 14:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48499 * 109.47038 * 239.99951 * 3 2 1 5 5 H 1.48505 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47179 * 119.99846 * 3 2 1 7 7 C 1.38811 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99923 * 159.25907 * 7 2 1 9 9 N 1.36938 * 119.99700 * 339.26583 * 7 2 1 10 10 C 1.46498 * 120.00040 * 321.83694 * 9 7 2 11 11 C 1.52994 * 109.47155 * 269.99996 * 10 9 7 12 12 O 1.42894 * 109.47066 * 65.00451 * 11 10 9 13 13 C 1.46500 * 119.99943 * 141.83793 * 9 7 2 14 14 H 1.08997 * 109.50022 * 184.48527 * 13 9 7 15 15 C 1.53046 * 109.52362 * 64.40546 * 13 9 7 16 16 C 1.53035 * 109.53773 * 178.66637 * 15 13 9 17 17 C 1.52756 * 109.38493 * 61.24291 * 16 15 13 18 18 N 1.46929 * 109.00924 * 305.58602 * 17 16 15 19 19 C 1.34768 * 120.63477 * 233.58827 * 18 17 16 20 20 O 1.21278 * 120.00632 * 179.71907 * 19 18 17 21 21 C 1.50707 * 119.99815 * 359.71158 * 19 18 17 22 22 C 1.50699 * 109.47283 * 179.97438 * 21 19 18 23 23 C 1.41381 * 126.79854 * 124.99977 * 22 21 19 24 24 C 1.35446 * 103.98523 * 180.21147 * 23 22 21 25 25 O 1.34045 * 106.44650 * 359.64860 * 24 23 22 26 26 N 1.20916 * 111.56526 * 0.38427 * 25 24 23 27 27 C 1.46931 * 118.73704 * 53.30770 * 18 17 16 28 28 H 0.96998 * 119.99666 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47545 * 30.00491 * 10 9 7 30 30 H 1.09009 * 109.47095 * 150.00054 * 10 9 7 31 31 H 1.09008 * 109.47198 * 184.99752 * 11 10 9 32 32 H 1.08994 * 109.47399 * 305.00043 * 11 10 9 33 33 H 0.96704 * 114.00507 * 179.97438 * 12 11 10 34 34 H 1.09000 * 109.45886 * 298.69253 * 15 13 9 35 35 H 1.09004 * 109.45631 * 58.66145 * 15 13 9 36 36 H 1.09000 * 109.49342 * 181.31987 * 16 15 13 37 37 H 1.09003 * 109.49912 * 301.38241 * 16 15 13 38 38 H 1.09003 * 109.51234 * 185.70683 * 17 16 15 39 39 H 1.09000 * 109.43287 * 65.41999 * 17 16 15 40 40 H 1.09000 * 109.47054 * 60.00519 * 21 19 18 41 41 H 1.09000 * 109.47357 * 300.00832 * 21 19 18 42 42 H 1.08000 * 128.00813 * 359.94938 * 23 22 21 43 43 H 1.08000 * 126.77887 * 179.74935 * 24 23 22 44 44 H 1.08996 * 109.58690 * 66.43321 * 27 18 17 45 45 H 1.09000 * 109.58358 * 186.86090 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0378 -1.2325 -0.3307 9 7 1.3922 -2.3494 0.4209 10 6 0.4659 -2.3090 1.5552 11 6 1.2381 -2.5539 2.8531 12 8 2.1526 -1.4782 3.0734 13 6 1.6571 -3.6173 -0.2637 14 1 1.0210 -4.3969 0.1554 15 6 3.1266 -4.0019 -0.0772 16 6 3.3958 -5.3427 -0.7640 17 6 3.1162 -5.2112 -2.2600 18 7 1.7519 -4.6994 -2.4487 19 6 0.8754 -5.3545 -3.2354 20 8 -0.2494 -4.9246 -3.3791 21 6 1.2931 -6.6213 -3.9367 22 6 0.1378 -7.1519 -4.7459 23 6 0.1383 -7.4509 -6.1278 24 6 -1.1216 -7.8855 -6.3691 25 8 -1.7707 -7.8373 -5.1972 26 7 -1.0581 -7.4261 -4.3111 27 6 1.3594 -3.4631 -1.7585 28 1 -0.4849 0.8401 -0.0004 29 1 -0.0147 -1.3317 1.5972 30 1 -0.2928 -3.0820 1.4325 31 1 0.5382 -2.6122 3.6868 32 1 1.7904 -3.4904 2.7762 33 1 2.6771 -1.5669 3.8810 34 1 3.7618 -3.2338 -0.5184 35 1 3.3471 -4.0884 0.9868 36 1 4.4368 -5.6273 -0.6109 37 1 2.7437 -6.1062 -0.3398 38 1 3.2090 -6.1879 -2.7350 39 1 3.8311 -4.5178 -2.7030 40 1 1.5901 -7.3650 -3.1973 41 1 2.1338 -6.4105 -4.5977 42 1 0.9532 -7.3513 -6.8295 43 1 -1.5235 -8.2089 -7.3179 44 1 1.9281 -2.6243 -2.1597 45 1 0.2935 -3.2869 -1.9025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692231311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:42 Heat of formation + Delta-G solvation = -19.600183 kcal Electronic energy + Delta-G solvation = -28383.235811 eV Core-core repulsion = 24404.158290 eV Total energy + Delta-G solvation = -3979.077521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.83389 -41.20184 -39.07853 -37.71718 -36.25820 -35.56059 -33.88252 -32.84935 -32.59595 -31.61417 -30.26767 -28.90775 -26.20572 -25.94690 -24.03432 -23.76045 -22.75472 -22.15077 -21.34451 -19.87417 -18.70085 -18.56642 -18.34758 -18.20116 -17.83464 -16.88798 -16.80611 -16.45640 -16.07950 -15.55030 -15.48970 -15.17127 -15.07123 -14.56120 -14.31629 -14.23763 -14.05020 -13.95285 -13.80073 -13.43164 -13.23151 -13.06670 -12.88914 -12.74139 -12.46970 -12.25977 -12.15945 -11.90606 -11.77648 -11.65052 -11.62845 -11.32640 -11.16612 -10.72988 -10.61531 -10.47966 -10.42478 -9.61012 -8.48385 -7.74599 -5.35833 0.74473 1.31390 1.44411 1.49860 1.55468 1.62795 2.08409 2.56400 2.58904 3.22264 3.36173 3.50709 3.59829 3.78890 3.80101 4.08168 4.13848 4.16816 4.23933 4.32890 4.41943 4.47125 4.47577 4.51713 4.59793 4.67962 4.71299 4.81630 4.89413 4.90622 4.95043 4.98623 5.02816 5.11654 5.21338 5.24628 5.46933 5.55745 5.61243 5.71319 5.80327 6.50193 6.52967 7.18228 7.21145 7.25975 7.48640 7.91744 8.43874 9.22580 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.003286 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.701676 B = 8519.604118 C = 8921.680552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.034 4.034 3 Si 0.951 3.049 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.054 0.946 9 N -0.582 5.582 10 C 0.136 3.864 11 C 0.075 3.925 12 O -0.571 6.571 13 C 0.165 3.835 14 H 0.041 0.959 15 C -0.115 4.115 16 C -0.124 4.124 17 C 0.101 3.899 18 N -0.606 5.606 19 C 0.501 3.499 20 O -0.592 6.592 21 C -0.051 4.051 22 C 0.002 3.998 23 C -0.231 4.231 24 C -0.057 4.057 25 O 0.083 5.917 26 N -0.392 5.392 27 C 0.128 3.872 28 H 0.245 0.755 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.374 0.626 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.207 0.793 43 H 0.262 0.738 44 H 0.052 0.948 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.986 -19.766 -8.828 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.071 0.929 9 N -0.302 5.302 10 C 0.010 3.990 11 C -0.005 4.005 12 O -0.376 6.376 13 C 0.058 3.942 14 H 0.059 0.941 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.020 4.020 18 N -0.339 5.339 19 C 0.290 3.710 20 O -0.473 6.473 21 C -0.090 4.090 22 C -0.157 4.157 23 C -0.253 4.253 24 C -0.138 4.138 25 O 0.016 5.984 26 N -0.096 5.096 27 C 0.003 3.997 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.143 0.857 39 H 0.098 0.902 40 H 0.154 0.846 41 H 0.175 0.825 42 H 0.224 0.776 43 H 0.278 0.722 44 H 0.070 0.930 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.437 -19.116 -8.263 22.113 hybrid contribution 0.391 1.462 0.189 1.525 sum 7.828 -17.654 -8.074 20.931 Atomic orbital electron populations 1.70127 1.06949 1.25469 1.54593 1.25712 0.95377 1.01266 1.00661 0.85606 0.77930 0.80320 0.78089 1.20156 1.22761 1.20739 1.18809 0.93023 0.86007 1.37961 0.92862 1.43855 1.51242 1.03793 1.31340 1.20968 0.91142 1.01183 0.85734 1.22758 0.91508 0.88694 0.97524 1.86792 1.56391 1.47132 1.47256 1.20811 0.95811 0.87809 0.89777 0.94061 1.21832 0.96151 0.97251 1.00258 1.21841 1.03537 0.96355 0.94527 1.22067 0.80814 1.01567 0.97584 1.48366 1.14185 1.25113 1.46207 1.21240 0.84371 0.86259 0.79170 1.90730 1.22578 1.69459 1.64484 1.20185 0.95498 0.93551 0.99788 1.23485 0.93867 1.03162 0.95190 1.23142 1.00696 1.06865 0.94547 1.26959 0.92446 1.01702 0.92682 1.84811 1.37317 1.61219 1.15035 1.73920 1.05324 1.15636 1.14728 1.21687 0.98645 0.85275 0.94078 0.94605 0.91917 0.94602 0.93822 0.94259 0.77953 0.93072 0.92686 0.87460 0.91654 0.85679 0.90236 0.84553 0.82505 0.77613 0.72220 0.92981 0.94798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 11.47 21.65 0.25 -57.07 16 2 C -0.03 -1.97 4.97 84.86 0.42 -1.54 16 3 Si 0.95 47.26 29.60 68.60 2.03 49.29 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 6 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.23 -12.48 7.49 84.03 0.63 -11.85 16 8 H 0.05 2.91 7.07 -2.91 -0.02 2.89 16 9 N -0.58 -29.08 2.34 -677.61 -1.59 -30.67 16 10 C 0.14 6.69 5.70 86.38 0.49 7.18 16 11 C 0.07 2.95 7.39 71.98 0.53 3.48 16 12 O -0.57 -23.77 13.13 -148.98 -1.96 -25.72 16 13 C 0.17 6.92 2.79 45.07 0.13 7.05 16 14 H 0.04 1.75 7.77 -2.39 -0.02 1.73 16 15 C -0.12 -3.75 5.18 30.62 0.16 -3.60 16 16 C -0.12 -2.64 6.06 30.52 0.19 -2.46 16 17 C 0.10 2.02 6.31 86.22 0.54 2.57 16 18 N -0.61 -19.55 2.98 -819.73 -2.44 -21.99 16 19 C 0.50 16.99 7.69 87.66 0.67 17.66 16 20 O -0.59 -27.72 15.01 -3.02 -0.05 -27.76 16 21 C -0.05 -1.04 4.64 29.10 0.14 -0.91 16 22 C 0.00 0.05 6.10 43.58 0.27 0.31 16 23 C -0.23 -3.80 11.12 22.40 0.25 -3.55 16 24 C -0.06 -0.88 12.30 67.17 0.83 -0.05 16 25 O 0.08 2.17 11.20 71.60 0.80 2.97 16 26 N -0.39 -12.59 11.47 -49.56 -0.57 -13.16 16 27 C 0.13 5.61 5.71 86.36 0.49 6.11 16 28 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.06 3.63 5.53 -2.39 -0.01 3.62 16 30 H 0.04 1.70 7.89 -2.38 -0.02 1.68 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.37 10.95 9.12 -74.05 -0.68 10.27 16 34 H 0.05 1.81 7.22 -2.39 -0.02 1.80 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.13 1.35 5.93 -2.39 -0.01 1.33 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.14 2.06 7.68 -2.39 -0.02 2.05 16 41 H 0.16 1.77 7.95 -2.39 -0.02 1.75 16 42 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.26 0.94 8.06 -2.91 -0.02 0.92 16 44 H 0.05 2.49 7.40 -2.39 -0.02 2.47 16 45 H 0.03 1.82 7.00 -2.39 -0.02 1.81 16 Total: -1.00 -89.07 365.82 2.55 -86.52 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.34 Total: 17.18 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 5.73 Total: 20.40 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -4.35 Total: -122.88 kcal Atomic # 8 Polarization: -49.32 SS G_CDS: -1.20 Total: -50.52 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -89.07 2.55 -86.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692231311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.920 kcal (2) G-P(sol) polarization free energy of solvation -89.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds