Wall clock time and date at job start Tue Mar 31 2020 14:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35315 * 126.66209 * 2 1 4 4 C 1.42275 * 103.92080 * 180.02562 * 3 2 1 5 5 C 1.48329 * 126.93747 * 179.88841 * 4 3 2 6 6 O 1.21488 * 120.00249 * 354.19547 * 5 4 3 7 7 N 1.34778 * 120.00013 * 174.19944 * 5 4 3 8 8 C 1.46937 * 120.62961 * 353.67332 * 7 5 4 9 9 C 1.53186 * 108.77316 * 233.58896 * 8 7 5 10 10 C 1.53045 * 109.33760 * 305.37580 * 9 8 7 11 11 C 1.53039 * 109.53852 * 61.32013 * 10 9 8 12 12 H 1.09004 * 109.49813 * 58.65163 * 11 10 9 13 13 N 1.46499 * 109.49928 * 178.71477 * 11 10 9 14 14 C 1.36937 * 120.00119 * 59.93083 * 13 11 10 15 15 H 1.08004 * 119.99268 * 35.87430 * 14 13 11 16 16 C 1.38806 * 120.00555 * 216.14652 * 14 13 11 17 17 N 1.31621 * 119.99797 * 16.59439 * 16 14 13 18 18 Si 1.86800 * 120.00343 * 196.59483 * 16 14 13 19 19 H 1.48496 * 109.47216 * 89.99563 * 18 16 14 20 20 H 1.48494 * 109.47238 * 210.00113 * 18 16 14 21 21 H 1.48501 * 109.46722 * 329.99787 * 18 16 14 22 22 C 1.46503 * 120.00029 * 239.93836 * 13 11 10 23 23 C 1.53004 * 109.46722 * 274.44836 * 22 13 11 24 24 O 1.42898 * 109.47274 * 65.00204 * 23 22 13 25 25 C 1.46920 * 120.63292 * 173.64745 * 7 5 4 26 26 N 1.30985 * 106.12157 * 359.62449 * 4 3 2 27 27 O 1.20905 * 111.43920 * 0.24100 * 26 4 3 28 28 H 1.09001 * 109.46994 * 180.32232 * 1 2 3 29 29 H 1.08995 * 109.47248 * 300.32341 * 1 2 3 30 30 H 1.09001 * 109.46707 * 60.32685 * 1 2 3 31 31 H 1.08000 * 128.04199 * 359.95013 * 3 2 1 32 32 H 1.09000 * 109.58157 * 353.37089 * 8 7 5 33 33 H 1.08994 * 109.58624 * 113.79459 * 8 7 5 34 34 H 1.08997 * 109.50411 * 65.31249 * 9 8 7 35 35 H 1.09002 * 109.49785 * 185.37847 * 9 8 7 36 36 H 1.09000 * 109.43451 * 301.31296 * 10 9 8 37 37 H 1.09001 * 109.48381 * 181.35683 * 10 9 8 38 38 H 0.97000 * 120.00131 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.46975 * 34.44963 * 22 13 11 40 40 H 1.09000 * 109.47148 * 154.44853 * 22 13 11 41 41 H 1.09000 * 109.46779 * 185.00170 * 23 22 13 42 42 H 1.08998 * 109.47349 * 304.99741 * 23 22 13 43 43 H 0.96693 * 113.99960 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.58854 * 6.62616 * 25 7 5 45 45 H 1.09008 * 109.70455 * 246.26917 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0855 0.0000 4 6 3.6271 0.5355 -0.0006 5 6 4.9075 1.2843 -0.0032 6 8 4.9034 2.4943 -0.1114 7 7 6.0756 0.6223 0.1145 8 6 6.0937 -0.8220 0.3843 9 6 6.9665 -1.0825 1.6159 10 6 8.3503 -0.4669 1.3958 11 6 8.2139 1.0462 1.2110 12 1 7.7388 1.4789 2.0915 13 7 9.5416 1.6385 1.0310 14 6 10.3299 1.2462 -0.0177 15 1 9.8812 1.0068 -0.9705 16 6 11.7051 1.1507 0.1453 17 7 12.2233 1.1129 1.3546 18 14 12.8202 1.0760 -1.3514 19 1 13.2123 2.4528 -1.7458 20 1 14.0365 0.2895 -1.0238 21 1 12.0982 0.4260 -2.4746 22 6 10.0261 2.6505 1.9730 23 6 9.5262 4.0305 1.5406 24 8 8.1013 4.0734 1.6394 25 6 7.3550 1.3309 -0.0251 26 7 3.4762 -0.7656 0.0073 27 8 2.3073 -1.0749 0.0078 28 1 -0.3633 -1.0277 0.0058 29 1 -0.3633 0.5188 0.8870 30 1 -0.3633 0.5088 -0.8929 31 1 2.0301 2.1272 -0.0007 32 1 5.0788 -1.1706 0.5754 33 1 6.5077 -1.3491 -0.4752 34 1 6.5030 -0.6303 2.4927 35 1 7.0662 -2.1569 1.7705 36 1 8.8034 -0.9021 0.5051 37 1 8.9811 -0.6717 2.2609 38 1 13.1843 1.0458 1.4686 39 1 9.6527 2.4254 2.9720 40 1 11.1160 2.6456 1.9829 41 1 9.9585 4.7929 2.1887 42 1 9.8248 4.2184 0.5093 43 1 7.7145 4.9210 1.3806 44 1 7.1725 2.4025 -0.1043 45 1 7.8731 0.9815 -0.9183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692231708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:41 Heat of formation + Delta-G solvation = -8.585221 kcal Electronic energy + Delta-G solvation = -28729.377058 eV Core-core repulsion = 24750.777181 eV Total energy + Delta-G solvation = -3978.599877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.15898 -41.24472 -39.11002 -37.80117 -36.42128 -35.20929 -34.53362 -33.64115 -32.98480 -31.31959 -29.10370 -28.68928 -27.26286 -26.11303 -24.92290 -23.65657 -23.54745 -22.32707 -21.43590 -20.08128 -18.94135 -18.52694 -18.45005 -18.07781 -17.87083 -17.14842 -16.66902 -16.34201 -16.07778 -15.50537 -15.41785 -15.22528 -14.84815 -14.70699 -14.52221 -14.36473 -14.14175 -13.94593 -13.91910 -13.70756 -13.26034 -13.17593 -12.95641 -12.76046 -12.54911 -12.40845 -12.16665 -11.96223 -11.87964 -11.73541 -11.61658 -11.53644 -11.30091 -11.18072 -10.72884 -10.57535 -10.35690 -9.80934 -8.54631 -7.82018 -5.44675 0.01570 0.68597 1.45475 1.48052 1.55372 1.65742 1.99186 2.08884 2.50113 2.78068 3.24657 3.41246 3.52097 3.73247 3.83587 3.97432 4.00519 4.11165 4.17120 4.28467 4.32904 4.42517 4.53433 4.59564 4.66193 4.71713 4.81187 4.81897 4.83946 4.87362 4.91137 4.95120 5.01173 5.11865 5.26756 5.28971 5.36622 5.46781 5.55568 5.63558 5.76508 6.22874 6.46789 6.80197 7.01774 7.08014 7.16667 7.83087 8.39003 9.15543 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.003473 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.710154 B = 8059.765877 C = 8638.357007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.202 4.202 4 C -0.040 4.040 5 C 0.585 3.415 6 O -0.560 6.560 7 N -0.590 5.590 8 C 0.089 3.911 9 C -0.120 4.120 10 C -0.116 4.116 11 C 0.181 3.819 12 H 0.041 0.959 13 N -0.583 5.583 14 C -0.252 4.252 15 H 0.056 0.944 16 C -0.036 4.036 17 N -0.920 5.920 18 Si 0.958 3.042 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.273 1.273 22 C 0.144 3.856 23 C 0.067 3.933 24 O -0.579 6.579 25 C 0.122 3.878 26 N -0.343 5.343 27 O 0.121 5.879 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.190 0.810 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.028 0.972 43 H 0.378 0.622 44 H 0.073 0.927 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.802 -2.917 -1.099 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.225 4.225 4 C -0.196 4.196 5 C 0.371 3.629 6 O -0.438 6.438 7 N -0.322 5.322 8 C -0.033 4.033 9 C -0.159 4.159 10 C -0.155 4.155 11 C 0.074 3.926 12 H 0.060 0.940 13 N -0.303 5.303 14 C -0.382 4.382 15 H 0.073 0.927 16 C -0.232 4.232 17 N -0.565 5.565 18 Si 0.787 3.213 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.018 3.982 23 C -0.013 4.013 24 O -0.385 6.385 25 C -0.002 4.002 26 N -0.046 5.046 27 O 0.048 5.952 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.207 0.793 32 H 0.143 0.857 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.035 0.965 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.046 0.954 43 H 0.226 0.774 44 H 0.092 0.908 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.598 -3.911 -0.895 21.967 hybrid contribution 1.155 1.516 -0.802 2.068 sum -20.443 -2.395 -1.697 20.653 Atomic orbital electron populations 1.20688 0.79575 1.06605 1.06070 1.25242 0.98039 0.83768 0.99993 1.22641 0.88701 1.02903 1.08253 1.23383 0.96528 0.90712 1.09022 1.17420 0.82389 0.86103 0.76950 1.90734 1.86891 1.14076 1.52109 1.48151 1.05305 1.10596 1.68168 1.22523 1.03822 0.78623 0.98305 1.21874 0.94646 1.02106 0.97237 1.21830 0.96089 0.96731 1.00862 1.20495 0.85880 0.92090 0.94176 0.94030 1.43837 1.13455 1.42639 1.30400 1.19171 0.88641 1.40297 0.90139 0.92664 1.25769 0.99049 1.00218 0.98176 1.69984 1.11232 1.53820 1.21495 0.85419 0.78456 0.77445 0.80028 1.21250 1.21969 1.19806 1.21111 1.01114 0.85746 0.90205 1.22871 0.80540 0.99284 0.98597 1.86551 1.21054 1.40157 1.90745 1.21941 0.81646 0.97139 0.99433 1.73973 0.97868 1.14965 1.17776 1.84765 1.10971 1.34367 1.65134 0.87908 0.87065 0.87097 0.79259 0.85660 0.90969 0.92327 0.88428 0.93017 0.93993 0.93801 0.96498 0.88669 0.93334 0.95372 0.77446 0.90807 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 71.24 0.74 0.47 16 2 C -0.01 -0.11 7.47 25.01 0.19 0.08 16 3 C -0.20 -4.31 10.93 22.60 0.25 -4.06 16 4 C -0.04 -1.16 6.89 42.96 0.30 -0.86 16 5 C 0.58 21.73 7.71 86.93 0.67 22.40 16 6 O -0.56 -23.93 16.38 -3.68 -0.06 -23.99 16 7 N -0.59 -22.04 2.97 -821.78 -2.44 -24.49 16 8 C 0.09 2.80 6.15 86.36 0.53 3.33 16 9 C -0.12 -3.83 6.08 30.67 0.19 -3.64 16 10 C -0.12 -4.77 5.11 30.62 0.16 -4.62 16 11 C 0.18 8.21 2.17 45.07 0.10 8.31 16 12 H 0.04 1.99 7.66 -2.38 -0.02 1.98 16 13 N -0.58 -29.52 2.37 -677.59 -1.61 -31.13 16 14 C -0.25 -13.58 8.28 84.03 0.70 -12.88 16 15 H 0.06 3.00 6.70 -2.91 -0.02 2.98 16 16 C -0.04 -1.93 5.05 84.86 0.43 -1.50 16 17 N -0.92 -52.34 11.12 21.65 0.24 -52.10 16 18 Si 0.96 44.21 29.59 68.60 2.03 46.24 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.14 7.11 5.61 86.38 0.49 7.59 16 23 C 0.07 2.78 7.39 71.98 0.53 3.31 16 24 O -0.58 -23.24 12.27 -148.98 -1.83 -25.07 16 25 C 0.12 5.27 5.78 86.36 0.50 5.76 16 26 N -0.34 -8.89 8.62 -49.52 -0.43 -9.32 16 27 O 0.12 2.40 11.18 71.92 0.80 3.20 16 28 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.13 3.60 4.14 -16.70 -0.07 3.53 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.05 2.27 7.70 -2.39 -0.02 2.25 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 39 H 0.02 0.83 8.02 -2.39 -0.02 0.81 16 40 H 0.10 5.17 5.26 -2.39 -0.01 5.15 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.38 11.60 9.12 -74.06 -0.68 10.92 16 44 H 0.07 3.48 6.44 -2.39 -0.02 3.47 16 45 H 0.05 2.47 6.79 -2.38 -0.02 2.46 16 Total: -1.00 -70.63 362.37 2.75 -67.87 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.29 Total: 25.07 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 5.76 Total: 23.70 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -4.24 Total: -117.03 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -1.08 Total: -45.85 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.63 2.75 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692231708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.287 kcal (2) G-P(sol) polarization free energy of solvation -70.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds