Wall clock time and date at job start Tue Mar 31 2020 14:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35324 * 126.66813 * 2 1 4 4 C 1.42267 * 103.92253 * 180.02562 * 3 2 1 5 5 C 1.48327 * 126.93866 * 180.02562 * 4 3 2 6 6 O 1.21496 * 120.00240 * 7.47373 * 5 4 3 7 7 N 1.34775 * 120.00367 * 187.47765 * 5 4 3 8 8 C 1.46936 * 120.63009 * 6.86570 * 7 5 4 9 9 C 1.53197 * 108.77158 * 126.36888 * 8 7 5 10 10 C 1.53037 * 109.33971 * 54.62546 * 9 8 7 11 11 C 1.53035 * 109.53662 * 298.67766 * 10 9 8 12 12 H 1.08998 * 109.50281 * 301.35214 * 11 10 9 13 13 N 1.46499 * 109.49549 * 181.28285 * 11 10 9 14 14 C 1.36937 * 120.00380 * 300.06715 * 13 11 10 15 15 H 1.07999 * 119.99681 * 44.62301 * 14 13 11 16 16 C 1.38811 * 119.99967 * 224.63046 * 14 13 11 17 17 N 1.31623 * 119.99950 * 206.09738 * 16 14 13 18 18 Si 1.86802 * 120.00347 * 26.09369 * 16 14 13 19 19 H 1.48497 * 109.47043 * 89.96287 * 18 16 14 20 20 H 1.48498 * 109.47260 * 209.96629 * 18 16 14 21 21 H 1.48502 * 109.47016 * 329.96379 * 18 16 14 22 22 C 1.46505 * 119.99818 * 120.06746 * 13 11 10 23 23 C 1.53004 * 109.46977 * 276.71990 * 22 13 11 24 24 O 1.42893 * 109.47249 * 64.71244 * 23 22 13 25 25 C 1.46924 * 120.63603 * 186.84633 * 7 5 4 26 26 N 1.30986 * 106.12419 * 0.25900 * 4 3 2 27 27 O 1.20902 * 111.43839 * 359.53756 * 26 4 3 28 28 H 1.09003 * 109.47392 * 89.99758 * 1 2 3 29 29 H 1.08994 * 109.47336 * 210.00250 * 1 2 3 30 30 H 1.09005 * 109.47233 * 330.00417 * 1 2 3 31 31 H 1.07997 * 128.03682 * 359.97438 * 3 2 1 32 32 H 1.08992 * 109.58606 * 246.16183 * 8 7 5 33 33 H 1.09002 * 109.58034 * 6.44356 * 8 7 5 34 34 H 1.09004 * 109.49111 * 174.59342 * 9 8 7 35 35 H 1.08998 * 109.49849 * 294.64881 * 9 8 7 36 36 H 1.08997 * 109.48327 * 178.64018 * 10 9 8 37 37 H 1.08997 * 109.43241 * 58.68420 * 10 9 8 38 38 H 0.96996 * 120.00122 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47447 * 36.71753 * 22 13 11 40 40 H 1.08994 * 109.47295 * 156.71995 * 22 13 11 41 41 H 1.08998 * 109.47080 * 184.71470 * 23 22 13 42 42 H 1.09002 * 109.47003 * 304.71567 * 23 22 13 43 43 H 0.96699 * 114.00202 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.59138 * 113.84085 * 25 7 5 45 45 H 1.08998 * 109.69999 * 353.48821 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9075 1.2841 -0.0003 6 8 4.9054 2.4912 0.1373 7 7 6.0734 0.6254 -0.1529 8 6 6.0868 -0.8093 -0.4698 9 6 6.9444 -1.0301 -1.7199 10 6 8.3313 -0.4229 -1.4968 11 6 8.1986 1.0834 -1.2612 12 1 7.7133 1.5449 -2.1212 13 7 9.5290 1.6687 -1.0781 14 6 10.3297 1.2420 -0.0524 15 1 10.4285 0.1861 0.1520 16 6 11.0140 2.1665 0.7246 17 7 12.1280 1.8185 1.3332 18 14 10.3539 3.9045 0.9067 19 1 9.4412 3.9674 2.0764 20 1 11.4851 4.8448 1.1103 21 1 9.6108 4.2830 -0.3220 22 6 10.0030 2.7107 -1.9925 23 6 10.5820 2.0603 -3.2506 24 8 9.5435 1.3758 -3.9540 25 6 7.3552 1.3283 -0.0059 26 7 3.4760 -0.7657 -0.0066 27 8 2.3072 -1.0749 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 2.0302 2.1272 -0.0004 32 1 6.5107 -1.3644 0.3670 33 1 5.0690 -1.1515 -0.6572 34 1 7.0415 -2.0990 -1.9102 35 1 6.4702 -0.5498 -2.5758 36 1 8.9513 -0.5998 -2.3756 37 1 8.7947 -0.8872 -0.6263 38 1 12.6064 2.4647 1.8759 39 1 9.1707 3.3581 -2.2685 40 1 10.7755 3.3017 -1.5007 41 1 11.0101 2.8296 -3.8932 42 1 11.3586 1.3497 -2.9677 43 1 9.8391 0.9390 -4.7645 44 1 7.8827 0.9475 0.8686 45 1 7.1768 2.3971 0.1117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692231709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:45 Heat of formation + Delta-G solvation = 16.282504 kcal Electronic energy + Delta-G solvation = -28743.366016 eV Core-core repulsion = 24765.844485 eV Total energy + Delta-G solvation = -3977.521531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.20343 -39.82537 -37.62889 -36.37350 -34.86148 -34.27031 -33.56557 -32.11394 -31.51705 -30.03070 -28.13792 -27.48380 -25.89429 -24.27998 -23.53603 -22.49389 -22.42851 -20.89825 -19.79184 -18.77988 -17.98465 -17.41639 -16.97806 -16.72487 -16.36601 -15.70293 -15.10423 -14.83508 -14.48572 -14.28333 -13.98096 -13.89399 -13.73215 -13.61584 -13.45433 -13.24582 -12.97547 -12.84081 -12.57862 -12.50313 -12.12100 -11.87739 -11.57379 -11.40148 -11.02198 -10.66442 -10.61589 -10.50695 -10.25837 -10.21311 -10.08076 -9.90213 -9.70734 -9.58483 -9.54602 -9.29445 -8.48704 -8.30181 -6.67641 -6.07230 -3.50934 1.02445 1.56131 2.73055 3.06412 3.26068 3.36647 3.48405 3.55638 3.89959 4.28701 4.51733 4.73725 4.85065 4.92604 4.95732 4.99874 5.02703 5.23356 5.27129 5.38218 5.42042 5.48192 5.58962 5.74504 5.84309 5.93014 5.98384 6.07156 6.11124 6.14490 6.21137 6.35471 6.38519 6.59845 6.65279 6.68343 6.76599 6.85021 7.06554 7.15414 7.59404 7.89860 8.04814 8.19000 8.26185 8.45248 9.00410 9.68423 10.16978 11.07908 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003771 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.902374 B = 7423.056488 C = 8020.577494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.036 4.036 3 C -0.186 4.186 4 C -0.011 4.011 5 C 0.588 3.412 6 O -0.530 6.530 7 N -0.586 5.586 8 C 0.088 3.912 9 C -0.129 4.129 10 C -0.120 4.120 11 C 0.178 3.822 12 H 0.060 0.940 13 N -0.589 5.589 14 C -0.276 4.276 15 H 0.075 0.925 16 C 0.048 3.952 17 N -0.890 5.890 18 Si 0.853 3.147 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.259 1.259 22 C 0.151 3.849 23 C 0.056 3.944 24 O -0.566 6.566 25 C 0.098 3.902 26 N -0.328 5.328 27 O 0.110 5.890 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.179 0.821 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.264 0.736 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.050 0.950 43 H 0.360 0.640 44 H 0.083 0.917 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.311 -5.317 -6.732 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.170 4.170 5 C 0.372 3.628 6 O -0.406 6.406 7 N -0.318 5.318 8 C -0.035 4.035 9 C -0.167 4.167 10 C -0.160 4.160 11 C 0.071 3.929 12 H 0.078 0.922 13 N -0.311 5.311 14 C -0.404 4.404 15 H 0.093 0.907 16 C -0.155 4.155 17 N -0.529 5.529 18 Si 0.680 3.320 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.183 1.183 22 C 0.025 3.975 23 C -0.024 4.024 24 O -0.369 6.369 25 C -0.025 4.025 26 N -0.033 5.033 27 O 0.039 5.961 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.197 0.803 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.205 0.795 44 H 0.102 0.898 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.573 -5.366 -6.020 20.249 hybrid contribution 0.001 1.521 -0.127 1.526 sum -18.573 -3.845 -6.147 19.938 Atomic orbital electron populations 1.20355 0.83563 1.04822 1.04257 1.24460 0.96435 0.85583 1.03423 1.22442 0.89822 1.01508 1.07033 1.23657 0.96974 0.89963 1.06379 1.17008 0.81528 0.86153 0.78076 1.90782 1.86166 1.12828 1.50830 1.48132 1.05881 1.10662 1.67103 1.22363 1.02807 0.80183 0.98098 1.21902 0.97241 1.00703 0.96898 1.21865 0.94516 0.97293 1.02286 1.20557 0.85687 0.92848 0.93853 0.92192 1.43963 1.11943 1.44628 1.30536 1.18627 1.21623 0.92936 1.07258 0.90707 1.25662 0.95991 0.97807 0.96001 1.69941 1.13769 1.35905 1.33275 0.87316 0.79100 0.86172 0.79375 1.21217 1.22194 1.18323 1.21327 0.97460 0.90565 0.88171 1.23048 0.90346 0.94902 0.94074 1.86554 1.37464 1.72416 1.40476 1.22491 0.80639 0.97695 1.01660 1.74111 0.96475 1.15554 1.17165 1.84792 1.11489 1.33684 1.66169 0.89258 0.89657 0.88860 0.80347 0.91263 0.87549 0.91311 0.92260 0.91445 0.91753 0.92660 0.94199 0.91169 0.95616 0.93217 0.79546 0.89840 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.44 36.00 0.38 0.07 16 2 C -0.04 -0.33 7.47 -35.35 -0.26 -0.59 16 3 C -0.19 -2.17 10.93 -39.07 -0.43 -2.60 16 4 C -0.01 -0.16 6.87 -82.53 -0.57 -0.73 16 5 C 0.59 10.92 7.71 -12.11 -0.09 10.83 16 6 O -0.53 -11.35 16.39 5.37 0.09 -11.26 16 7 N -0.59 -10.79 2.97 -173.69 -0.52 -11.31 16 8 C 0.09 1.38 6.13 -3.70 -0.02 1.36 16 9 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 10 C -0.12 -2.23 5.10 -26.69 -0.14 -2.36 16 11 C 0.18 3.70 2.11 -67.81 -0.14 3.56 16 12 H 0.06 1.29 7.51 -51.93 -0.39 0.90 16 13 N -0.59 -13.67 1.85 -165.53 -0.31 -13.98 16 14 C -0.28 -7.34 8.39 -15.06 -0.13 -7.47 16 15 H 0.08 2.16 7.15 -52.49 -0.38 1.79 16 16 C 0.05 1.32 5.11 -17.43 -0.09 1.24 16 17 N -0.89 -26.33 13.97 55.49 0.78 -25.55 16 18 Si 0.85 21.56 26.51 -169.99 -4.51 17.06 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.26 -6.26 5.44 56.52 0.31 -5.95 16 22 C 0.15 3.28 4.11 -4.04 -0.02 3.26 16 23 C 0.06 1.03 7.39 37.16 0.27 1.31 16 24 O -0.57 -9.63 12.05 -35.23 -0.42 -10.06 16 25 C 0.10 2.06 5.77 -3.71 -0.02 2.04 16 26 N -0.33 -4.52 8.66 33.29 0.29 -4.23 16 27 O 0.11 1.23 11.18 17.24 0.19 1.42 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.11 1.56 4.21 -56.21 -0.24 1.32 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.28 7.62 -51.93 -0.40 0.88 16 37 H 0.06 1.29 7.12 -51.93 -0.37 0.92 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.04 0.86 7.94 -51.93 -0.41 0.44 16 40 H 0.07 1.61 5.00 -51.93 -0.26 1.35 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.36 4.38 9.12 45.56 0.42 4.80 16 44 H 0.08 1.89 7.50 -51.93 -0.39 1.50 16 45 H 0.08 1.91 7.01 -51.93 -0.36 1.55 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -32.95 358.54 -6.24 -39.19 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.81 Total: 5.52 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.42 Total: 7.79 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.24 Total: -55.07 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.14 Total: -19.89 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.51 Total: 17.06 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.95 -6.24 -39.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692231709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.473 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds