Wall clock time and date at job start Tue Mar 31 2020 14:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35324 * 126.66813 * 2 1 4 4 C 1.42267 * 103.92253 * 180.02562 * 3 2 1 5 5 C 1.48327 * 126.93866 * 180.02562 * 4 3 2 6 6 O 1.21496 * 120.00240 * 7.47373 * 5 4 3 7 7 N 1.34775 * 120.00367 * 187.47765 * 5 4 3 8 8 C 1.46936 * 120.63009 * 6.86570 * 7 5 4 9 9 C 1.53197 * 108.77158 * 126.36888 * 8 7 5 10 10 C 1.53037 * 109.33971 * 54.62546 * 9 8 7 11 11 C 1.53035 * 109.53662 * 298.67766 * 10 9 8 12 12 H 1.08998 * 109.50281 * 301.35214 * 11 10 9 13 13 N 1.46499 * 109.49549 * 181.28285 * 11 10 9 14 14 C 1.36937 * 120.00380 * 300.06715 * 13 11 10 15 15 H 1.07999 * 119.99681 * 44.62301 * 14 13 11 16 16 C 1.38811 * 119.99967 * 224.63046 * 14 13 11 17 17 N 1.31623 * 119.99950 * 206.09738 * 16 14 13 18 18 Si 1.86802 * 120.00347 * 26.09369 * 16 14 13 19 19 H 1.48497 * 109.47043 * 89.96287 * 18 16 14 20 20 H 1.48498 * 109.47260 * 209.96629 * 18 16 14 21 21 H 1.48502 * 109.47016 * 329.96379 * 18 16 14 22 22 C 1.46505 * 119.99818 * 120.06746 * 13 11 10 23 23 C 1.53004 * 109.46977 * 276.71990 * 22 13 11 24 24 O 1.42893 * 109.47249 * 64.71244 * 23 22 13 25 25 C 1.46924 * 120.63603 * 186.84633 * 7 5 4 26 26 N 1.30986 * 106.12419 * 0.25900 * 4 3 2 27 27 O 1.20902 * 111.43839 * 359.53756 * 26 4 3 28 28 H 1.09003 * 109.47392 * 89.99758 * 1 2 3 29 29 H 1.08994 * 109.47336 * 210.00250 * 1 2 3 30 30 H 1.09005 * 109.47233 * 330.00417 * 1 2 3 31 31 H 1.07997 * 128.03682 * 359.97438 * 3 2 1 32 32 H 1.08992 * 109.58606 * 246.16183 * 8 7 5 33 33 H 1.09002 * 109.58034 * 6.44356 * 8 7 5 34 34 H 1.09004 * 109.49111 * 174.59342 * 9 8 7 35 35 H 1.08998 * 109.49849 * 294.64881 * 9 8 7 36 36 H 1.08997 * 109.48327 * 178.64018 * 10 9 8 37 37 H 1.08997 * 109.43241 * 58.68420 * 10 9 8 38 38 H 0.96996 * 120.00122 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.47447 * 36.71753 * 22 13 11 40 40 H 1.08994 * 109.47295 * 156.71995 * 22 13 11 41 41 H 1.08998 * 109.47080 * 184.71470 * 23 22 13 42 42 H 1.09002 * 109.47003 * 304.71567 * 23 22 13 43 43 H 0.96699 * 114.00202 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.59138 * 113.84085 * 25 7 5 45 45 H 1.08998 * 109.69999 * 353.48821 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9075 1.2841 -0.0003 6 8 4.9054 2.4912 0.1373 7 7 6.0734 0.6254 -0.1529 8 6 6.0868 -0.8093 -0.4698 9 6 6.9444 -1.0301 -1.7199 10 6 8.3313 -0.4229 -1.4968 11 6 8.1986 1.0834 -1.2612 12 1 7.7133 1.5449 -2.1212 13 7 9.5290 1.6687 -1.0781 14 6 10.3297 1.2420 -0.0524 15 1 10.4285 0.1861 0.1520 16 6 11.0140 2.1665 0.7246 17 7 12.1280 1.8185 1.3332 18 14 10.3539 3.9045 0.9067 19 1 9.4412 3.9674 2.0764 20 1 11.4851 4.8448 1.1103 21 1 9.6108 4.2830 -0.3220 22 6 10.0030 2.7107 -1.9925 23 6 10.5820 2.0603 -3.2506 24 8 9.5435 1.3758 -3.9540 25 6 7.3552 1.3283 -0.0059 26 7 3.4760 -0.7657 -0.0066 27 8 2.3072 -1.0749 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 2.0302 2.1272 -0.0004 32 1 6.5107 -1.3644 0.3670 33 1 5.0690 -1.1515 -0.6572 34 1 7.0415 -2.0990 -1.9102 35 1 6.4702 -0.5498 -2.5758 36 1 8.9513 -0.5998 -2.3756 37 1 8.7947 -0.8872 -0.6263 38 1 12.6064 2.4647 1.8759 39 1 9.1707 3.3581 -2.2685 40 1 10.7755 3.3017 -1.5007 41 1 11.0101 2.8296 -3.8932 42 1 11.3586 1.3497 -2.9677 43 1 9.8391 0.9390 -4.7645 44 1 7.8827 0.9475 0.8686 45 1 7.1768 2.3971 0.1117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692231709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:44 Heat of formation + Delta-G solvation = -7.579708 kcal Electronic energy + Delta-G solvation = -28744.400759 eV Core-core repulsion = 24765.844485 eV Total energy + Delta-G solvation = -3978.556274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.18715 -41.31871 -39.25553 -37.83868 -36.47137 -35.23891 -34.54929 -33.83697 -33.23474 -31.58466 -29.29283 -28.71845 -27.30692 -26.04407 -24.87084 -23.94712 -23.56418 -22.48561 -21.42548 -20.11294 -18.97061 -18.56996 -18.47142 -18.20408 -17.95222 -17.21864 -16.91286 -16.43934 -16.10809 -15.53970 -15.35704 -15.31062 -14.98662 -14.80336 -14.48876 -14.45552 -14.28508 -14.10962 -14.05341 -13.92136 -13.61973 -13.19315 -13.08885 -12.93428 -12.57568 -12.38354 -12.17618 -12.12042 -11.83607 -11.69386 -11.60464 -11.54268 -11.35630 -11.23972 -10.73359 -10.63121 -10.37686 -9.85554 -8.61987 -8.25838 -5.65175 -0.02367 0.65671 1.28401 1.40139 1.47810 1.59364 1.92040 2.05860 2.39264 2.73914 2.98801 3.30163 3.40466 3.61177 3.79310 3.92377 4.02296 4.05631 4.14518 4.22749 4.31216 4.40518 4.45389 4.50509 4.56808 4.60668 4.71719 4.80215 4.81749 4.84980 4.88681 4.93159 4.97237 5.03604 5.10460 5.15987 5.27330 5.35594 5.42370 5.56346 5.94411 6.16408 6.26088 6.73084 6.99439 7.04236 7.06529 7.60582 8.11230 8.93636 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003771 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.902374 B = 7423.056488 C = 8020.577494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.006 4.006 3 C -0.203 4.203 4 C -0.041 4.041 5 C 0.584 3.416 6 O -0.568 6.568 7 N -0.590 5.590 8 C 0.088 3.912 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.183 3.817 12 H 0.058 0.942 13 N -0.599 5.599 14 C -0.251 4.251 15 H 0.045 0.955 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.903 3.097 19 H -0.301 1.301 20 H -0.293 1.293 21 H -0.244 1.244 22 C 0.140 3.860 23 C 0.071 3.929 24 O -0.576 6.576 25 C 0.109 3.891 26 N -0.340 5.340 27 O 0.124 5.876 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.189 0.811 32 H 0.069 0.931 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.385 0.615 44 H 0.060 0.940 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.491 -6.222 -8.575 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.226 4.226 4 C -0.197 4.197 5 C 0.371 3.629 6 O -0.447 6.447 7 N -0.321 5.321 8 C -0.033 4.033 9 C -0.156 4.156 10 C -0.149 4.149 11 C 0.076 3.924 12 H 0.077 0.923 13 N -0.321 5.321 14 C -0.381 4.381 15 H 0.063 0.937 16 C -0.195 4.195 17 N -0.575 5.575 18 Si 0.731 3.269 19 H -0.229 1.229 20 H -0.220 1.220 21 H -0.168 1.168 22 C 0.015 3.985 23 C -0.009 4.009 24 O -0.382 6.382 25 C -0.015 4.015 26 N -0.042 5.042 27 O 0.049 5.951 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.206 0.794 32 H 0.087 0.913 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.233 0.767 44 H 0.078 0.922 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.755 -6.290 -7.918 23.990 hybrid contribution 0.812 1.693 0.401 1.920 sum -20.943 -4.597 -7.517 22.721 Atomic orbital electron populations 1.20689 0.79527 1.06624 1.06100 1.25236 0.98037 0.83704 0.99935 1.22653 0.88720 1.02891 1.08290 1.23301 0.96342 0.90787 1.09304 1.17481 0.82564 0.86006 0.76866 1.90742 1.86963 1.14579 1.52419 1.48174 1.05013 1.11679 1.67271 1.22548 1.04039 0.78414 0.98346 1.21846 0.94661 1.02397 0.96677 1.21712 0.96623 0.95392 1.01182 1.20597 0.84290 0.94234 0.93292 0.92346 1.44075 1.12704 1.44985 1.30316 1.18433 1.20675 0.91573 1.07411 0.93698 1.26067 0.96303 1.00639 0.96462 1.70016 1.15229 1.37054 1.35230 0.86509 0.78244 0.83057 0.79104 1.22929 1.21965 1.16750 1.21392 0.97288 0.90403 0.89400 1.22668 0.89690 0.95226 0.93327 1.86480 1.37187 1.72680 1.41880 1.22114 0.82135 0.96362 1.00909 1.74014 0.97902 1.14821 1.17509 1.84759 1.10930 1.34290 1.65088 0.87133 0.87765 0.87117 0.79367 0.91261 0.85837 0.88161 0.91737 0.91550 0.93835 0.92746 0.93867 0.92600 0.92397 0.94881 0.76681 0.92215 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.44 71.23 0.74 0.47 16 2 C -0.01 -0.09 7.47 25.01 0.19 0.10 16 3 C -0.20 -4.38 10.93 22.60 0.25 -4.13 16 4 C -0.04 -1.20 6.87 42.96 0.30 -0.90 16 5 C 0.58 22.06 7.71 86.93 0.67 22.73 16 6 O -0.57 -25.12 16.39 -3.70 -0.06 -25.18 16 7 N -0.59 -22.08 2.97 -821.74 -2.44 -24.52 16 8 C 0.09 2.68 6.13 86.36 0.53 3.21 16 9 C -0.12 -3.36 6.08 30.67 0.19 -3.17 16 10 C -0.11 -4.03 5.10 30.62 0.16 -3.88 16 11 C 0.18 7.69 2.11 45.07 0.10 7.78 16 12 H 0.06 2.49 7.51 -2.39 -0.02 2.48 16 13 N -0.60 -28.21 1.85 -677.60 -1.25 -29.46 16 14 C -0.25 -13.81 8.39 84.03 0.70 -13.11 16 15 H 0.05 2.73 7.15 -2.91 -0.02 2.71 16 16 C 0.00 0.21 5.11 84.86 0.43 0.65 16 17 N -0.93 -57.08 13.97 21.65 0.30 -56.78 16 18 Si 0.90 46.01 26.51 68.60 1.82 47.83 16 19 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 20 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 21 H -0.24 -11.67 5.44 99.48 0.54 -11.13 16 22 C 0.14 6.05 4.11 86.38 0.36 6.40 16 23 C 0.07 2.49 7.39 71.98 0.53 3.02 16 24 O -0.58 -18.30 12.05 -148.98 -1.80 -20.09 16 25 C 0.11 4.76 5.77 86.36 0.50 5.26 16 26 N -0.34 -8.77 8.66 -49.52 -0.43 -9.20 16 27 O 0.12 2.42 11.18 71.88 0.80 3.23 16 28 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.19 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.12 3.42 4.21 -10.85 -0.05 3.38 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 2.45 7.62 -2.39 -0.02 2.43 16 37 H 0.04 1.77 7.12 -2.39 -0.02 1.76 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.04 1.82 7.94 -2.39 -0.02 1.80 16 40 H 0.06 2.55 5.00 -2.39 -0.01 2.53 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.39 8.21 9.12 -74.06 -0.68 7.54 16 44 H 0.06 2.86 7.50 -2.39 -0.02 2.84 16 45 H 0.06 2.77 7.01 -2.39 -0.02 2.75 16 Total: -1.00 -75.17 358.54 2.72 -72.45 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.14 Total: 17.30 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 5.63 Total: 24.43 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -3.82 Total: -119.96 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.05 Total: -42.05 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.82 Total: 47.83 kcal Total: -75.17 2.72 -72.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692231709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.870 kcal (2) G-P(sol) polarization free energy of solvation -75.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds