Wall clock time and date at job start Tue Mar 31 2020 14:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34173 * 125.44247 * 2 1 4 4 C 1.47018 * 105.95498 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19027 * 179.97438 * 4 3 2 6 6 O 1.21611 * 120.00072 * 170.22950 * 5 4 3 7 7 N 1.34779 * 120.00314 * 350.22532 * 5 4 3 8 8 C 1.46503 * 119.99581 * 0.19744 * 7 5 4 9 9 C 1.46494 * 120.00463 * 180.19237 * 7 5 4 10 10 C 1.53000 * 109.46935 * 90.00090 * 9 7 5 11 11 N 1.46908 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99843 * 66.05199 * 11 10 9 13 13 C 1.46907 * 110.99583 * 189.99967 * 11 10 9 14 14 C 1.50698 * 109.46552 * 170.00249 * 13 11 10 15 15 O 1.21292 * 120.00278 * 359.97438 * 14 13 11 16 16 N 1.34776 * 120.00005 * 179.97438 * 14 13 11 17 17 C 1.37095 * 120.00232 * 179.97438 * 16 14 13 18 18 H 1.07992 * 120.00064 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99695 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00491 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99707 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47167 * 90.00061 * 21 19 17 23 23 H 1.48494 * 109.46918 * 210.00209 * 21 19 17 24 24 H 1.48498 * 109.47116 * 330.00097 * 21 19 17 25 25 C 1.36412 * 105.61689 * 0.02562 * 4 3 2 26 26 O 1.33645 * 108.39589 * 359.97438 * 25 4 3 27 27 H 1.08994 * 109.47019 * 90.00050 * 1 2 3 28 28 H 1.08997 * 109.47494 * 210.00530 * 1 2 3 29 29 H 1.09001 * 109.46693 * 330.00199 * 1 2 3 30 30 H 1.07999 * 127.01827 * 359.73402 * 3 2 1 31 31 H 1.08999 * 109.47369 * 83.98178 * 8 7 5 32 32 H 1.09003 * 109.46844 * 203.98464 * 8 7 5 33 33 H 1.08998 * 109.47507 * 323.97932 * 8 7 5 34 34 H 1.08998 * 109.47561 * 209.99844 * 9 7 5 35 35 H 1.09005 * 109.47182 * 330.00525 * 9 7 5 36 36 H 1.09001 * 109.47296 * 300.00304 * 10 9 7 37 37 H 1.08998 * 109.47032 * 60.00565 * 10 9 7 38 38 H 1.08994 * 109.47559 * 59.99300 * 12 11 10 39 39 H 1.08999 * 109.46800 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.46862 * 299.99067 * 12 11 10 41 41 H 1.08998 * 109.47055 * 289.99971 * 13 11 10 42 42 H 1.08997 * 109.47053 * 50.00553 * 13 11 10 43 43 H 0.97010 * 119.99722 * 0.02562 * 16 14 13 44 44 H 0.96995 * 119.99915 * 179.97438 * 20 19 17 45 45 H 1.08007 * 125.79914 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6026 0.0006 5 6 4.9025 1.4123 0.0003 6 8 5.9807 0.8792 0.1797 7 7 4.8338 2.7435 -0.1987 8 6 3.5345 3.3863 -0.4105 9 6 6.0583 3.5477 -0.2032 10 6 6.6145 3.6217 -1.6266 11 7 7.8428 4.4277 -1.6310 12 6 8.9111 3.7633 -0.8725 13 6 8.2756 4.7200 -3.0041 14 6 9.3831 5.7416 -2.9748 15 8 9.7732 6.1830 -1.9145 16 7 9.9403 6.1647 -4.1267 17 6 10.9475 7.0944 -4.1002 18 1 11.2947 7.4874 -3.1562 19 6 11.5222 7.5302 -5.2879 20 7 11.1000 7.0516 -6.4366 21 14 12.8951 8.7965 -5.2516 22 1 14.2053 8.1036 -5.1614 23 1 12.8501 9.6108 -6.4925 24 1 12.7210 9.6817 -4.0721 25 6 3.5789 -0.7584 0.0004 26 8 2.2852 -1.0936 0.0002 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9596 2.1229 -0.0040 31 1 3.0714 3.5961 0.5536 32 1 3.6754 4.3191 -0.9566 33 1 2.8900 2.7221 -0.9863 34 1 5.8338 4.5535 0.1519 35 1 6.7977 3.0875 0.4523 36 1 6.8390 2.6160 -1.9818 37 1 5.8752 4.0820 -2.2821 38 1 9.1272 2.7942 -1.3221 39 1 9.8086 4.3815 -0.8915 40 1 8.5898 3.6216 0.1594 41 1 8.6374 3.8053 -3.4735 42 1 7.4340 5.1129 -3.5745 43 1 9.6281 5.8119 -4.9748 44 1 11.5010 7.3561 -7.2656 45 1 4.4103 -1.4478 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698984438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:53 Heat of formation + Delta-G solvation = -26.032691 kcal Electronic energy + Delta-G solvation = -26632.037567 eV Core-core repulsion = 22652.681111 eV Total energy + Delta-G solvation = -3979.356456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.97482 -39.90049 -38.53515 -36.70450 -35.55710 -33.86563 -33.54947 -32.38492 -31.21802 -29.88317 -27.71183 -27.51424 -26.70821 -25.56107 -24.38230 -22.80538 -21.74942 -20.73794 -19.16214 -19.01631 -17.81560 -17.66384 -16.88540 -16.72533 -16.42967 -16.03427 -15.35638 -15.18017 -14.62828 -14.55930 -14.42783 -13.94415 -13.78719 -13.65423 -13.59767 -13.51595 -13.39235 -13.22633 -13.09395 -12.73316 -12.28693 -12.07427 -12.04129 -11.68742 -11.47852 -11.26748 -11.17776 -10.89494 -10.72584 -10.36785 -10.21503 -10.18973 -10.07660 -9.44612 -9.08140 -8.82144 -8.37865 -7.94487 -7.81366 -6.38731 -3.79338 1.06598 1.61624 2.42877 2.74658 3.10756 3.19947 3.28307 3.34420 3.94454 4.04953 4.10474 4.30010 4.39871 4.54983 4.74751 4.84112 4.92056 4.95800 4.98450 5.05720 5.14457 5.20525 5.25705 5.28578 5.32021 5.42692 5.54733 5.64565 5.73114 5.79207 5.84925 5.91748 5.95023 6.02008 6.11040 6.30380 6.34615 6.63628 6.64786 7.15678 7.31329 7.42957 7.58174 7.97948 8.09806 8.65447 9.21370 9.58038 10.10176 10.79125 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.001917 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.595356 B =14599.693232 C =14786.240420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.205 4.205 4 C -0.237 4.237 5 C 0.586 3.414 6 O -0.540 6.540 7 N -0.606 5.606 8 C 0.061 3.939 9 C 0.119 3.881 10 C 0.042 3.958 11 N -0.516 5.516 12 C 0.021 3.979 13 C 0.047 3.953 14 C 0.445 3.555 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.049 3.951 26 O -0.175 6.175 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.174 0.826 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.016 0.984 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.520 -14.010 10.049 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.062 4.062 3 C -0.223 4.223 4 C -0.241 4.241 5 C 0.376 3.624 6 O -0.419 6.419 7 N -0.338 5.338 8 C -0.082 4.082 9 C -0.003 4.003 10 C -0.088 4.088 11 N -0.240 5.240 12 C -0.127 4.127 13 C -0.085 4.085 14 C 0.231 3.769 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.021 4.021 26 O -0.071 6.071 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.191 0.809 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -22.850 -13.746 10.898 28.807 hybrid contribution 0.741 -0.138 -1.159 1.383 sum -22.109 -13.884 9.739 27.865 Atomic orbital electron populations 1.20353 0.84702 1.04321 1.03810 1.22436 0.94231 0.83886 1.05615 1.23352 0.90715 1.00193 1.08085 1.21403 0.93861 0.94106 1.14730 1.17308 0.87282 0.81529 0.76290 1.90814 1.29503 1.71460 1.50075 1.47587 1.08110 1.06814 1.71309 1.22494 0.84996 0.99202 1.01492 1.21520 0.85679 0.95592 0.97550 1.22435 0.93073 0.96157 0.97110 1.61538 1.04096 1.45017 1.13387 1.22580 0.96387 0.96541 0.97205 1.21857 0.98667 0.98265 0.89665 1.19725 0.85936 0.86296 0.84965 1.90481 1.65231 1.60347 1.30010 1.41869 1.33150 1.38290 1.06905 1.19700 1.11280 1.17083 0.94660 0.87903 1.25260 0.99200 0.98885 0.94677 1.69612 1.42991 1.44162 0.97653 0.85857 0.80586 0.80128 0.77709 1.20460 1.20967 1.19420 1.24375 0.83636 0.95494 0.98638 1.83762 1.16614 1.35614 1.71086 0.89839 0.90368 0.89100 0.80928 0.92234 0.90494 0.89519 0.89246 0.89389 0.94748 0.90974 0.96567 0.88584 0.92019 0.93473 0.89498 0.77512 0.91924 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.40 36.00 0.37 0.12 16 2 C -0.01 -0.09 7.28 -35.74 -0.26 -0.35 16 3 C -0.20 -1.55 8.76 -37.46 -0.33 -1.88 16 4 C -0.24 -2.45 6.08 -103.28 -0.63 -3.08 16 5 C 0.59 7.60 7.67 -12.54 -0.10 7.50 16 6 O -0.54 -8.86 16.51 5.27 0.09 -8.77 16 7 N -0.61 -6.78 2.87 -182.87 -0.53 -7.30 16 8 C 0.06 0.44 8.74 59.85 0.52 0.96 16 9 C 0.12 1.52 5.31 -4.05 -0.02 1.50 16 10 C 0.04 0.59 5.28 -3.82 -0.02 0.57 16 11 N -0.52 -9.09 4.50 -244.37 -1.10 -10.19 16 12 C 0.02 0.37 8.96 60.06 0.54 0.91 16 13 C 0.05 0.88 5.45 -4.97 -0.03 0.85 16 14 C 0.45 10.74 7.47 -10.99 -0.08 10.66 16 15 O -0.58 -15.73 13.91 5.55 0.08 -15.65 16 16 N -0.57 -14.57 5.29 -10.97 -0.06 -14.63 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 21 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.05 0.44 11.92 30.07 0.36 0.80 16 26 O -0.18 -1.51 10.52 7.66 0.08 -1.43 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.17 0.89 4.89 -52.49 -0.26 0.63 16 31 H 0.06 0.34 7.69 -51.93 -0.40 -0.06 16 32 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 33 H 0.09 0.54 4.78 -51.93 -0.25 0.29 16 34 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.09 1.27 5.83 -51.93 -0.30 0.97 16 36 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 2.01 5.82 -51.93 -0.30 1.70 16 40 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 41 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 42 H 0.09 1.46 7.93 -51.93 -0.41 1.04 16 43 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.22 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -35.01 373.71 -6.31 -41.33 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.30 Total: 8.36 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 0.09 Total: 10.50 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.96 Total: -56.22 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: 0.24 Total: -25.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.01 -6.31 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698984438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.293 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds