Wall clock time and date at job start Tue Mar 31 2020 14:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34182 * 125.43479 * 2 1 4 4 C 1.47020 * 105.95510 * 179.97438 * 3 2 1 5 5 C 1.47376 * 127.19261 * 179.97438 * 4 3 2 6 6 O 1.21616 * 120.00229 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99916 * 180.27598 * 5 4 3 8 8 C 1.46505 * 120.00024 * 179.72441 * 7 5 4 9 9 H 1.09005 * 109.47253 * 322.99212 * 8 7 5 10 10 C 1.53001 * 109.47117 * 82.98701 * 8 7 5 11 11 C 1.52995 * 109.47272 * 202.98812 * 8 7 5 12 12 N 1.46904 * 109.46933 * 55.16370 * 11 8 7 13 13 C 1.46896 * 110.99521 * 198.92740 * 12 11 8 14 14 C 1.46903 * 110.99763 * 74.97609 * 12 11 8 15 15 C 1.50698 * 109.46530 * 189.99793 * 14 12 11 16 16 O 1.21294 * 120.00327 * 0.02562 * 15 14 12 17 17 N 1.34786 * 119.99559 * 179.97438 * 15 14 12 18 18 C 1.37096 * 119.99658 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00391 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99810 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00052 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00081 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47057 * 89.99574 * 22 20 18 24 24 H 1.48495 * 109.46817 * 209.99598 * 22 20 18 25 25 H 1.48494 * 109.46731 * 329.99532 * 22 20 18 26 26 C 1.36416 * 105.61706 * 0.25814 * 4 3 2 27 27 O 1.33654 * 108.39306 * 359.57520 * 26 4 3 28 28 H 1.08994 * 109.47602 * 90.00744 * 1 2 3 29 29 H 1.09014 * 109.46826 * 210.00339 * 1 2 3 30 30 H 1.08996 * 109.47332 * 329.99771 * 1 2 3 31 31 H 1.08005 * 127.02278 * 359.97438 * 3 2 1 32 32 H 0.96997 * 119.99989 * 359.72008 * 7 5 4 33 33 H 1.08994 * 109.47323 * 180.02562 * 10 8 7 34 34 H 1.09005 * 109.47230 * 300.00230 * 10 8 7 35 35 H 1.09002 * 109.47363 * 60.00023 * 10 8 7 36 36 H 1.09001 * 109.46883 * 175.16522 * 11 8 7 37 37 H 1.08996 * 109.47328 * 295.16293 * 11 8 7 38 38 H 1.09001 * 109.47637 * 54.12711 * 13 12 11 39 39 H 1.09007 * 109.46789 * 174.12208 * 13 12 11 40 40 H 1.08997 * 109.47277 * 294.12036 * 13 12 11 41 41 H 1.08991 * 109.47114 * 309.99736 * 14 12 11 42 42 H 1.09000 * 109.47308 * 70.00029 * 14 12 11 43 43 H 0.96991 * 119.99707 * 0.02562 * 17 15 14 44 44 H 0.96998 * 119.99900 * 180.02562 * 21 20 18 45 45 H 1.07997 * 125.80393 * 179.71413 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6709 0.6030 0.0006 5 6 4.9023 1.4127 0.0003 6 8 4.8318 2.6269 0.0000 7 7 6.1067 0.8077 -0.0046 8 6 7.3308 1.6127 -0.0110 9 1 7.1807 2.4974 -0.6298 10 6 7.6667 2.0414 1.4188 11 6 8.4839 0.7828 -0.5788 12 7 8.1139 0.2744 -1.9065 13 6 8.9632 -0.8608 -2.2908 14 6 8.1737 1.3416 -2.9143 15 6 7.5585 0.8529 -4.2003 16 8 7.1136 -0.2733 -4.2703 17 7 7.5018 1.6678 -5.2724 18 6 6.9427 1.2231 -6.4425 19 1 6.5473 0.2200 -6.5051 20 6 6.8846 2.0629 -7.5479 21 7 7.3653 3.2836 -7.4717 22 14 6.1222 1.4573 -9.1421 23 1 4.6692 1.7641 -9.1437 24 1 6.7728 2.1364 -10.2913 25 1 6.3184 -0.0101 -9.2584 26 6 3.5791 -0.7580 -0.0050 27 8 2.2853 -1.0934 0.0007 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5140 30 1 -0.3634 0.8899 0.5138 31 1 1.9594 2.1231 -0.0004 32 1 6.1630 -0.1606 -0.0039 33 1 8.5771 2.6406 1.4140 34 1 6.8451 2.6326 1.8234 35 1 7.8168 1.1567 2.0376 36 1 9.3734 1.4071 -0.6637 37 1 8.6905 -0.0554 0.0866 38 1 8.9272 -1.6219 -1.5114 39 1 8.6020 -1.2837 -3.2284 40 1 9.9904 -0.5194 -2.4181 41 1 7.6232 2.2112 -2.5556 42 1 9.2134 1.6171 -3.0905 43 1 7.8572 2.5685 -5.2163 44 1 7.3244 3.8700 -8.2433 45 1 4.4104 -1.4474 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699451028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:26 Heat of formation + Delta-G solvation = -80.044137 kcal Electronic energy + Delta-G solvation = -27575.465318 eV Core-core repulsion = 23593.766750 eV Total energy + Delta-G solvation = -3981.698568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.53147 -40.80448 -40.18786 -38.23755 -36.13175 -35.54576 -34.11417 -33.30337 -33.27544 -31.55389 -29.59187 -27.95871 -27.53552 -26.61376 -25.13491 -23.57474 -22.10461 -21.89077 -20.94047 -20.76365 -19.85889 -18.68727 -17.93200 -17.37865 -17.30152 -17.01636 -16.64152 -16.60539 -15.98719 -15.76506 -15.53981 -15.31596 -15.11718 -15.01039 -14.43011 -14.15369 -13.99313 -13.79908 -13.77499 -13.69662 -13.45478 -13.37490 -13.08852 -12.90756 -12.85853 -12.65913 -12.62623 -12.46686 -12.38012 -12.13156 -11.71898 -11.44827 -11.10099 -10.82569 -10.27369 -10.03280 -10.00190 -9.52692 -9.20073 -8.47105 -5.95963 0.37794 1.03444 1.36495 1.39435 1.52569 1.88987 2.05046 2.18321 2.27947 2.41740 2.78999 3.19660 3.37041 3.64569 3.68107 3.82403 4.04783 4.13754 4.19419 4.33600 4.38017 4.44266 4.51389 4.54722 4.59175 4.67691 4.71772 4.72774 4.75512 4.79289 4.83239 4.88591 5.05968 5.13153 5.25397 5.30401 5.39354 5.39706 5.55921 5.87149 6.00824 6.06471 6.22476 6.59471 6.62502 7.12169 7.28474 7.55759 8.11140 8.70663 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009201 B = 0.003749 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.576869 B = 7466.974714 C = 9338.698252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 C -0.198 4.198 4 C -0.263 4.263 5 C 0.582 3.418 6 O -0.591 6.591 7 N -0.689 5.689 8 C 0.144 3.856 9 H 0.054 0.946 10 C -0.151 4.151 11 C 0.050 3.950 12 N -0.530 5.530 13 C 0.028 3.972 14 C 0.057 3.943 15 C 0.443 3.557 16 O -0.608 6.608 17 N -0.578 5.578 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.040 3.960 27 O -0.177 6.177 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.411 0.589 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.393 0.607 44 H 0.277 0.723 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 -7.033 19.852 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.217 4.217 4 C -0.268 4.268 5 C 0.371 3.629 6 O -0.474 6.474 7 N -0.339 5.339 8 C 0.039 3.961 9 H 0.072 0.928 10 C -0.210 4.210 11 C -0.078 4.078 12 N -0.254 5.254 13 C -0.120 4.120 14 C -0.074 4.074 15 C 0.231 3.769 16 O -0.494 6.494 17 N -0.216 5.216 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.030 4.030 27 O -0.073 6.073 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.169 0.831 32 H 0.248 0.752 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.226 0.774 44 H 0.086 0.914 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -4.033 -7.244 19.688 21.363 hybrid contribution 0.831 0.822 -1.231 1.698 sum -3.202 -6.422 18.457 19.803 Atomic orbital electron populations 1.20521 0.81861 1.05685 1.04765 1.22932 0.95643 0.82833 1.04604 1.22641 0.90650 1.00244 1.08203 1.21598 0.94492 0.94578 1.16094 1.17542 0.83466 0.86643 0.75223 1.90725 1.87907 1.15683 1.53076 1.45535 1.04196 1.10806 1.73391 1.21046 0.83671 0.93844 0.97516 0.92799 1.22056 1.01973 1.02446 0.94492 1.22571 0.95466 1.00248 0.89516 1.61480 1.55291 1.07452 1.01226 1.22453 0.93545 0.93298 1.02688 1.21731 1.00002 0.95149 0.90510 1.20728 0.84177 0.86231 0.85814 1.90439 1.52896 1.21311 1.84755 1.41973 1.54003 1.15104 1.10487 1.19661 1.36965 1.00061 0.89392 0.90185 1.26064 0.97655 0.95262 1.02469 1.69686 1.46472 1.07314 1.32968 0.84927 0.78214 0.78358 0.76848 1.19907 1.19448 1.19435 1.24996 0.84800 0.94996 0.98168 1.83745 1.16785 1.35723 1.71045 0.89120 0.88715 0.87703 0.83105 0.75213 0.89818 0.94091 0.90124 0.91361 0.86829 0.88940 0.92823 0.95420 0.89401 0.91368 0.77380 0.91376 0.73740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.40 71.23 0.74 -0.23 16 2 C -0.01 -0.26 7.28 24.76 0.18 -0.08 16 3 C -0.20 -5.55 10.90 23.65 0.26 -5.29 16 4 C -0.26 -7.67 6.31 -18.99 -0.12 -7.79 16 5 C 0.58 19.09 7.75 86.65 0.67 19.76 16 6 O -0.59 -24.28 16.67 -4.08 -0.07 -24.35 16 7 N -0.69 -17.45 4.82 -445.83 -2.15 -19.60 16 8 C 0.14 3.40 2.55 44.99 0.11 3.51 16 9 H 0.05 1.66 6.41 -2.38 -0.02 1.64 16 10 C -0.15 -2.76 9.46 71.98 0.68 -2.07 16 11 C 0.05 0.98 4.54 86.30 0.39 1.37 16 12 N -0.53 -15.38 4.16 -927.07 -3.86 -19.24 16 13 C 0.03 0.76 9.17 127.69 1.17 1.94 16 14 C 0.06 2.05 5.28 85.56 0.45 2.50 16 15 C 0.44 21.54 7.52 87.66 0.66 22.20 16 16 O -0.61 -33.16 13.88 -3.07 -0.04 -33.20 16 17 N -0.58 -30.87 5.29 -306.98 -1.62 -32.49 16 18 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 19 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 21 N -0.92 -51.62 13.05 21.66 0.28 -51.33 16 22 Si 0.99 44.05 29.55 68.60 2.03 46.08 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.04 0.90 11.61 67.39 0.78 1.68 16 27 O -0.18 -4.10 10.52 4.47 0.05 -4.05 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 32 H 0.41 8.22 7.55 -92.71 -0.70 7.52 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 0.95 8.13 -2.38 -0.02 0.93 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.18 8.01 -2.39 -0.02 1.16 16 37 H 0.11 1.54 7.81 -2.39 -0.02 1.52 16 38 H 0.09 1.89 7.94 -2.39 -0.02 1.87 16 39 H 0.05 1.99 5.92 -2.38 -0.01 1.97 16 40 H 0.03 0.69 8.13 -2.39 -0.02 0.67 16 41 H 0.09 3.15 6.66 -2.39 -0.02 3.13 16 42 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 43 H 0.39 20.30 7.90 -92.72 -0.73 19.57 16 44 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.25 3.28 7.47 -2.91 -0.02 3.26 16 Total: -1.00 -80.39 381.49 1.48 -78.91 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.41 Total: 40.65 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.26 Total: 18.62 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -7.35 Total: -122.67 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -0.06 Total: -61.60 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -80.39 1.48 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699451028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.132 kcal (2) G-P(sol) polarization free energy of solvation -80.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds