Wall clock time and date at job start Tue Mar 31 2020 14:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34181 * 125.43050 * 2 1 4 4 C 1.47026 * 105.95109 * 180.02562 * 3 2 1 5 5 C 1.47375 * 127.19253 * 179.97438 * 4 3 2 6 6 O 1.21612 * 120.00219 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99999 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99927 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46962 * 34.59786 * 8 7 5 10 10 C 1.53006 * 109.46613 * 274.60495 * 8 7 5 11 11 C 1.52998 * 109.47130 * 154.60712 * 8 7 5 12 12 N 1.46901 * 109.46635 * 305.17897 * 11 8 7 13 13 C 1.46903 * 110.99560 * 163.93673 * 12 11 8 14 14 C 1.46897 * 111.00484 * 287.88717 * 12 11 8 15 15 C 1.50701 * 109.47306 * 170.00206 * 14 12 11 16 16 O 1.21293 * 119.99942 * 0.02562 * 15 14 12 17 17 N 1.34775 * 119.99670 * 180.02562 * 15 14 12 18 18 C 1.37101 * 119.99686 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00042 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00001 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99888 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47032 * 60.01038 * 22 20 18 24 24 H 1.48496 * 109.46764 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47259 * 300.00606 * 22 20 18 26 26 C 1.36420 * 105.61446 * 0.02562 * 4 3 2 27 27 O 1.33647 * 108.39691 * 359.97438 * 26 4 3 28 28 H 1.09006 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47572 * 299.99813 * 1 2 3 30 30 H 1.09004 * 109.47426 * 60.00727 * 1 2 3 31 31 H 1.07999 * 127.03117 * 359.97438 * 3 2 1 32 32 H 0.96993 * 119.99796 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47265 * 60.00152 * 10 8 7 34 34 H 1.08998 * 109.46460 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.46617 * 299.99820 * 10 8 7 36 36 H 1.08995 * 109.47485 * 65.17937 * 11 8 7 37 37 H 1.09000 * 109.47033 * 185.18436 * 11 8 7 38 38 H 1.09004 * 109.47084 * 54.89868 * 13 12 11 39 39 H 1.09004 * 109.47321 * 174.89331 * 13 12 11 40 40 H 1.08993 * 109.47630 * 294.89571 * 13 12 11 41 41 H 1.08997 * 109.47689 * 290.01087 * 14 12 11 42 42 H 1.09007 * 109.46875 * 50.00353 * 14 12 11 43 43 H 0.97001 * 120.00786 * 359.97438 * 17 15 14 44 44 H 0.96996 * 119.99376 * 179.97438 * 21 20 18 45 45 H 1.08002 * 125.80256 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0933 0.0000 4 6 3.6709 0.6030 -0.0006 5 6 4.9023 1.4128 -0.0014 6 8 4.8318 2.6268 -0.0011 7 7 6.1067 0.8078 -0.0024 8 6 7.3308 1.6127 -0.0026 9 1 7.1699 2.5188 0.5815 10 6 7.6924 1.9905 -1.4405 11 6 8.4733 0.8037 0.6148 12 7 8.0761 0.3357 1.9494 13 6 8.9620 -0.7397 2.4152 14 6 8.0469 1.4467 2.9100 15 6 7.4058 0.9847 4.1932 16 8 7.0124 -0.1579 4.2975 17 7 7.2697 1.8412 5.2248 18 6 6.6869 1.4208 6.3924 19 1 6.3366 0.4034 6.4853 20 6 6.5470 2.3036 7.4563 21 7 6.9728 3.5417 7.3430 22 14 5.7523 1.7309 9.0469 23 1 6.5374 0.6059 9.6154 24 1 5.7222 2.8542 10.0176 25 1 4.3652 1.2774 8.7720 26 6 3.5790 -0.7581 -0.0015 27 8 2.2853 -1.0934 -0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 1.9594 2.1231 -0.0004 32 1 6.1630 -0.1605 -0.0031 33 1 6.8785 2.5668 -1.8804 34 1 8.6034 2.5890 -1.4407 35 1 7.8532 1.0844 -2.0247 36 1 8.6955 -0.0541 -0.0198 37 1 9.3595 1.4326 0.6992 38 1 9.9969 -0.3994 2.3785 39 1 8.7031 -1.0054 3.4402 40 1 8.8434 -1.6121 1.7728 41 1 9.0650 1.7796 3.1117 42 1 7.4707 2.2726 2.4927 43 1 7.5846 2.7549 5.1416 44 1 6.8747 4.1580 8.0856 45 1 4.4103 -1.4475 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699451029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:30 Heat of formation + Delta-G solvation = -52.589672 kcal Electronic energy + Delta-G solvation = -27638.139437 eV Core-core repulsion = 23657.631384 eV Total energy + Delta-G solvation = -3980.508053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.56257 -39.58326 -38.50370 -36.83767 -34.66547 -33.73738 -33.12775 -32.38060 -31.20817 -30.57960 -28.03246 -26.95751 -26.71707 -24.68483 -24.04743 -22.33252 -21.09213 -20.75572 -19.75835 -19.07742 -17.82717 -17.72611 -16.42780 -16.33379 -16.06671 -15.92331 -15.26844 -14.78632 -14.63494 -14.37842 -14.24402 -13.94367 -13.61268 -13.48408 -13.33887 -13.26912 -13.18133 -12.86074 -12.78274 -12.43839 -12.16272 -12.03057 -11.91752 -11.77076 -11.46562 -11.43230 -11.19395 -10.98844 -10.61576 -10.41623 -10.18222 -9.84088 -9.74108 -9.43227 -8.92311 -8.59056 -8.42284 -7.95891 -7.86997 -6.37909 -3.78711 1.39023 2.03702 2.78123 3.22159 3.24208 3.27695 3.32005 3.56274 3.93433 3.99911 4.25471 4.48113 4.68272 4.74145 4.92324 5.08499 5.14190 5.19475 5.23892 5.27289 5.31132 5.42709 5.45072 5.51610 5.56003 5.64302 5.68754 5.72584 5.72948 5.92196 5.94828 5.99897 6.06151 6.12954 6.31348 6.32829 6.48090 6.62667 6.97027 7.23618 7.34094 7.58158 7.69346 8.09478 8.42125 8.65361 9.21417 9.58341 10.09941 10.79854 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009000 B = 0.003879 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.473408 B = 7216.187928 C = 9153.235447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.162 4.162 4 C -0.225 4.225 5 C 0.590 3.410 6 O -0.543 6.543 7 N -0.701 5.701 8 C 0.146 3.854 9 H 0.089 0.911 10 C -0.161 4.161 11 C 0.043 3.957 12 N -0.516 5.516 13 C 0.024 3.976 14 C 0.043 3.957 15 C 0.445 3.555 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.022 3.978 27 O -0.174 6.174 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.400 0.600 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.014 0.986 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 -5.998 -18.528 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.182 4.182 4 C -0.229 4.229 5 C 0.377 3.623 6 O -0.421 6.421 7 N -0.352 5.352 8 C 0.041 3.959 9 H 0.107 0.893 10 C -0.220 4.220 11 C -0.086 4.086 12 N -0.239 5.239 13 C -0.124 4.124 14 C -0.088 4.088 15 C 0.231 3.769 16 O -0.463 6.463 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.048 4.048 27 O -0.070 6.070 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.845 -6.203 -18.330 19.730 hybrid contribution 0.927 0.453 0.951 1.403 sum -2.918 -5.749 -17.379 18.536 Atomic orbital electron populations 1.20314 0.84802 1.04014 1.03753 1.22275 0.94097 0.83685 1.06788 1.22462 0.90115 0.99675 1.05925 1.21494 0.94711 0.93276 1.13468 1.17212 0.82283 0.87018 0.75750 1.90766 1.87168 1.13703 1.50455 1.45556 1.04661 1.10138 1.74830 1.20967 0.83641 0.95117 0.96157 0.89288 1.22152 1.02040 1.01655 0.96127 1.22490 0.95593 0.99133 0.91369 1.61552 1.52013 1.09779 1.00596 1.22515 0.92429 0.93508 1.03933 1.21916 0.99696 0.93863 0.93358 1.19683 0.85512 0.86910 0.84804 1.90471 1.53992 1.19176 1.82697 1.41859 1.53347 1.12682 1.12101 1.19631 1.35161 0.98638 0.89435 0.88028 1.25254 0.97800 0.95078 0.99749 1.69610 1.46963 1.04358 1.33332 0.85932 0.79694 0.77928 0.80741 1.19945 1.20968 1.19913 1.24390 0.84169 0.95482 1.00799 1.83712 1.16528 1.35530 1.71253 0.90524 0.89483 0.89682 0.82501 0.76596 0.91817 0.91620 0.92477 0.90272 0.93307 0.96796 0.88653 0.92185 0.93487 0.89471 0.77523 0.91838 0.77234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.40 36.00 0.37 -0.18 16 2 C -0.02 -0.24 7.28 -35.74 -0.26 -0.50 16 3 C -0.16 -2.23 10.90 -37.45 -0.41 -2.64 16 4 C -0.22 -3.26 6.31 -103.27 -0.65 -3.91 16 5 C 0.59 9.47 7.78 -12.54 -0.10 9.37 16 6 O -0.54 -10.61 16.64 5.27 0.09 -10.52 16 7 N -0.70 -9.19 4.78 -54.89 -0.26 -9.46 16 8 C 0.15 1.82 2.52 -67.93 -0.17 1.65 16 9 H 0.09 1.35 6.22 -51.93 -0.32 1.03 16 10 C -0.16 -1.61 9.49 37.16 0.35 -1.26 16 11 C 0.04 0.50 4.53 -3.82 -0.02 0.48 16 12 N -0.52 -8.04 4.17 -244.37 -1.02 -9.06 16 13 C 0.02 0.36 9.19 60.07 0.55 0.91 16 14 C 0.04 0.78 5.30 -4.98 -0.03 0.76 16 15 C 0.45 10.66 7.42 -10.99 -0.08 10.58 16 16 O -0.58 -15.45 13.96 5.55 0.08 -15.38 16 17 N -0.56 -14.67 5.29 -10.96 -0.06 -14.73 16 18 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -25.09 13.05 55.50 0.72 -24.37 16 22 Si 0.93 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.02 0.26 11.61 30.08 0.35 0.61 16 27 O -0.17 -2.15 10.52 7.68 0.08 -2.07 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.16 2.06 8.06 -52.49 -0.42 1.63 16 32 H 0.40 4.40 7.58 -40.82 -0.31 4.09 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.75 7.99 -51.93 -0.42 0.34 16 37 H 0.05 0.53 8.05 -51.93 -0.42 0.11 16 38 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 39 H 0.09 1.81 5.79 -51.93 -0.30 1.51 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 42 H 0.09 1.58 6.50 -51.93 -0.34 1.24 16 43 H 0.39 9.88 7.90 -40.82 -0.32 9.56 16 44 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.21 1.69 7.47 -52.49 -0.39 1.30 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -35.23 381.48 -6.53 -41.75 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -6.55 Total: 13.87 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.33 Total: 7.77 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.62 Total: -57.61 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: 0.25 Total: -27.96 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.23 -6.53 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699451029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.836 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds