Wall clock time and date at job start Tue Mar 31 2020 14:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34181 * 125.43050 * 2 1 4 4 C 1.47026 * 105.95109 * 180.02562 * 3 2 1 5 5 C 1.47375 * 127.19253 * 179.97438 * 4 3 2 6 6 O 1.21612 * 120.00219 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99999 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99927 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46962 * 34.59786 * 8 7 5 10 10 C 1.53006 * 109.46613 * 274.60495 * 8 7 5 11 11 C 1.52998 * 109.47130 * 154.60712 * 8 7 5 12 12 N 1.46901 * 109.46635 * 305.17897 * 11 8 7 13 13 C 1.46903 * 110.99560 * 163.93673 * 12 11 8 14 14 C 1.46897 * 111.00484 * 287.88717 * 12 11 8 15 15 C 1.50701 * 109.47306 * 170.00206 * 14 12 11 16 16 O 1.21293 * 119.99942 * 0.02562 * 15 14 12 17 17 N 1.34775 * 119.99670 * 180.02562 * 15 14 12 18 18 C 1.37101 * 119.99686 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00042 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00001 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99888 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47032 * 60.01038 * 22 20 18 24 24 H 1.48496 * 109.46764 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47259 * 300.00606 * 22 20 18 26 26 C 1.36420 * 105.61446 * 0.02562 * 4 3 2 27 27 O 1.33647 * 108.39691 * 359.97438 * 26 4 3 28 28 H 1.09006 * 109.46749 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47572 * 299.99813 * 1 2 3 30 30 H 1.09004 * 109.47426 * 60.00727 * 1 2 3 31 31 H 1.07999 * 127.03117 * 359.97438 * 3 2 1 32 32 H 0.96993 * 119.99796 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.47265 * 60.00152 * 10 8 7 34 34 H 1.08998 * 109.46460 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.46617 * 299.99820 * 10 8 7 36 36 H 1.08995 * 109.47485 * 65.17937 * 11 8 7 37 37 H 1.09000 * 109.47033 * 185.18436 * 11 8 7 38 38 H 1.09004 * 109.47084 * 54.89868 * 13 12 11 39 39 H 1.09004 * 109.47321 * 174.89331 * 13 12 11 40 40 H 1.08993 * 109.47630 * 294.89571 * 13 12 11 41 41 H 1.08997 * 109.47689 * 290.01087 * 14 12 11 42 42 H 1.09007 * 109.46875 * 50.00353 * 14 12 11 43 43 H 0.97001 * 120.00786 * 359.97438 * 17 15 14 44 44 H 0.96996 * 119.99376 * 179.97438 * 21 20 18 45 45 H 1.08002 * 125.80256 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2848 1.0933 0.0000 4 6 3.6709 0.6030 -0.0006 5 6 4.9023 1.4128 -0.0014 6 8 4.8318 2.6268 -0.0011 7 7 6.1067 0.8078 -0.0024 8 6 7.3308 1.6127 -0.0026 9 1 7.1699 2.5188 0.5815 10 6 7.6924 1.9905 -1.4405 11 6 8.4733 0.8037 0.6148 12 7 8.0761 0.3357 1.9494 13 6 8.9620 -0.7397 2.4152 14 6 8.0469 1.4467 2.9100 15 6 7.4058 0.9847 4.1932 16 8 7.0124 -0.1579 4.2975 17 7 7.2697 1.8412 5.2248 18 6 6.6869 1.4208 6.3924 19 1 6.3366 0.4034 6.4853 20 6 6.5470 2.3036 7.4563 21 7 6.9728 3.5417 7.3430 22 14 5.7523 1.7309 9.0469 23 1 6.5374 0.6059 9.6154 24 1 5.7222 2.8542 10.0176 25 1 4.3652 1.2774 8.7720 26 6 3.5790 -0.7581 -0.0015 27 8 2.2853 -1.0934 -0.0009 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 1.9594 2.1231 -0.0004 32 1 6.1630 -0.1605 -0.0031 33 1 6.8785 2.5668 -1.8804 34 1 8.6034 2.5890 -1.4407 35 1 7.8532 1.0844 -2.0247 36 1 8.6955 -0.0541 -0.0198 37 1 9.3595 1.4326 0.6992 38 1 9.9969 -0.3994 2.3785 39 1 8.7031 -1.0054 3.4402 40 1 8.8434 -1.6121 1.7728 41 1 9.0650 1.7796 3.1117 42 1 7.4707 2.2726 2.4927 43 1 7.5846 2.7549 5.1416 44 1 6.8747 4.1580 8.0856 45 1 4.4103 -1.4475 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699451029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:29 Heat of formation + Delta-G solvation = -79.661168 kcal Electronic energy + Delta-G solvation = -27639.313345 eV Core-core repulsion = 23657.631384 eV Total energy + Delta-G solvation = -3981.681961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.53222 -40.81915 -40.19062 -38.24024 -36.13508 -35.54355 -34.11178 -33.30151 -33.27711 -31.55777 -29.59332 -27.96395 -27.53893 -26.61213 -25.13637 -23.57979 -22.10126 -21.90243 -20.93186 -20.77196 -19.85623 -18.68281 -17.94392 -17.38340 -17.29685 -17.01355 -16.65919 -16.59472 -15.99553 -15.75612 -15.53489 -15.32123 -15.13299 -15.01059 -14.41972 -14.15034 -13.99820 -13.79473 -13.77374 -13.68981 -13.44985 -13.39102 -13.09595 -12.91342 -12.84581 -12.67993 -12.65893 -12.47419 -12.38093 -12.14194 -11.70481 -11.43954 -11.10423 -10.82389 -10.27109 -10.03500 -10.00097 -9.52353 -9.20458 -8.47020 -5.96062 0.37843 1.03162 1.38065 1.39280 1.50703 1.89204 2.04842 2.18196 2.27925 2.41441 2.79234 3.19645 3.36879 3.64437 3.67831 3.81282 4.05351 4.14090 4.18546 4.32780 4.37859 4.43825 4.51525 4.53809 4.58791 4.67604 4.72409 4.73100 4.75214 4.79633 4.84139 4.88287 5.05648 5.12960 5.23456 5.29991 5.39151 5.39444 5.55696 5.87003 6.00884 6.06280 6.22015 6.59121 6.62098 7.11779 7.28329 7.55454 8.10669 8.70545 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009000 B = 0.003879 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.473408 B = 7216.187928 C = 9153.235447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 C -0.199 4.199 4 C -0.263 4.263 5 C 0.583 3.417 6 O -0.592 6.592 7 N -0.689 5.689 8 C 0.143 3.857 9 H 0.056 0.944 10 C -0.151 4.151 11 C 0.050 3.950 12 N -0.530 5.530 13 C 0.029 3.971 14 C 0.057 3.943 15 C 0.443 3.557 16 O -0.608 6.608 17 N -0.578 5.578 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.993 3.007 23 H -0.268 1.268 24 H -0.271 1.271 25 H -0.274 1.274 26 C 0.040 3.960 27 O -0.177 6.177 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.150 0.850 32 H 0.411 0.589 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.393 0.607 44 H 0.277 0.723 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -7.561 -19.580 21.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.218 4.218 4 C -0.268 4.268 5 C 0.372 3.628 6 O -0.474 6.474 7 N -0.339 5.339 8 C 0.038 3.962 9 H 0.074 0.926 10 C -0.209 4.209 11 C -0.078 4.078 12 N -0.254 5.254 13 C -0.119 4.119 14 C -0.074 4.074 15 C 0.230 3.770 16 O -0.494 6.494 17 N -0.215 5.215 18 C -0.462 4.462 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.817 3.183 23 H -0.193 1.193 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.030 4.030 27 O -0.073 6.073 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.168 0.832 32 H 0.248 0.752 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.226 0.774 44 H 0.086 0.914 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.243 -7.794 -19.408 21.165 hybrid contribution 0.760 0.884 1.206 1.678 sum -2.483 -6.910 -18.202 19.627 Atomic orbital electron populations 1.20525 0.81860 1.05428 1.05036 1.22925 0.95643 0.82822 1.04578 1.22619 0.90689 1.00258 1.08265 1.21601 0.94477 0.94596 1.16082 1.17542 0.83487 0.86636 0.75183 1.90725 1.87900 1.15710 1.53086 1.45523 1.04173 1.10797 1.73419 1.21067 0.83663 0.94041 0.97470 0.92625 1.22057 1.01908 1.02704 0.94259 1.22572 0.95405 1.00621 0.89163 1.61496 1.53298 1.09074 1.01542 1.22417 0.93167 0.94350 1.01935 1.21706 0.99974 0.94692 0.91044 1.20712 0.84172 0.86163 0.85919 1.90444 1.54900 1.20476 1.83574 1.41971 1.54097 1.13050 1.12397 1.19632 1.37084 0.98252 0.91239 0.90163 1.26069 0.97805 0.95040 1.02503 1.69684 1.47290 1.05054 1.34396 0.84988 0.78534 0.77957 0.76857 1.19312 1.19499 1.19885 1.24996 0.84813 0.94975 0.98195 1.83751 1.16793 1.35710 1.71003 0.88984 0.88769 0.87731 0.83179 0.75203 0.94050 0.89804 0.90074 0.86827 0.91447 0.94860 0.93091 0.89378 0.91463 0.89506 0.77403 0.91361 0.73682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.40 71.24 0.74 -0.25 16 2 C -0.01 -0.26 7.28 24.76 0.18 -0.08 16 3 C -0.20 -5.67 10.90 23.65 0.26 -5.41 16 4 C -0.26 -7.76 6.31 -18.99 -0.12 -7.88 16 5 C 0.58 19.27 7.78 86.65 0.67 19.95 16 6 O -0.59 -24.53 16.64 -4.07 -0.07 -24.60 16 7 N -0.69 -17.51 4.78 -445.83 -2.13 -19.64 16 8 C 0.14 3.36 2.52 44.99 0.11 3.47 16 9 H 0.06 1.71 6.22 -2.39 -0.01 1.70 16 10 C -0.15 -2.71 9.49 71.98 0.68 -2.03 16 11 C 0.05 1.00 4.53 86.30 0.39 1.39 16 12 N -0.53 -15.50 4.17 -927.05 -3.87 -19.37 16 13 C 0.03 0.81 9.19 127.69 1.17 1.98 16 14 C 0.06 2.06 5.30 85.56 0.45 2.51 16 15 C 0.44 21.66 7.42 87.66 0.65 22.31 16 16 O -0.61 -33.27 13.96 -3.07 -0.04 -33.31 16 17 N -0.58 -31.01 5.29 -306.98 -1.62 -32.64 16 18 C -0.33 -19.46 9.68 84.04 0.81 -18.64 16 19 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 20 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 21 N -0.92 -51.79 13.05 21.66 0.28 -51.51 16 22 Si 0.99 44.13 29.55 68.60 2.03 46.15 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.04 0.90 11.61 67.40 0.78 1.68 16 27 O -0.18 -4.13 10.52 4.55 0.05 -4.08 16 28 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.41 8.22 7.58 -92.71 -0.70 7.51 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.11 1.57 7.99 -2.39 -0.02 1.55 16 37 H 0.07 1.17 8.05 -2.39 -0.02 1.15 16 38 H 0.03 0.79 8.13 -2.38 -0.02 0.77 16 39 H 0.05 1.90 5.79 -2.38 -0.01 1.89 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 42 H 0.09 3.17 6.50 -2.38 -0.02 3.15 16 43 H 0.39 20.44 7.90 -92.71 -0.73 19.71 16 44 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.25 3.30 7.47 -2.91 -0.02 3.28 16 Total: -1.00 -80.57 381.48 1.48 -79.10 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -0.41 Total: 41.23 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 7.26 Total: 18.66 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -7.34 Total: -123.16 kcal Atomic # 8 Polarization: -61.93 SS G_CDS: -0.06 Total: -61.99 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -80.57 1.48 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699451029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.564 kcal (2) G-P(sol) polarization free energy of solvation -80.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds