Wall clock time and date at job start Tue Mar 31 2020 14:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35448 * 126.77554 * 2 1 4 4 C 1.41380 * 103.98667 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.80331 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47319 * 124.99949 * 5 4 3 7 7 O 1.21278 * 120.00184 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00128 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00214 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47164 * 176.66455 * 9 8 6 11 11 N 1.46497 * 109.54327 * 54.84832 * 10 9 8 12 12 C 1.36932 * 120.00285 * 62.21846 * 11 10 9 13 13 H 1.08000 * 119.99971 * 354.07483 * 12 11 10 14 14 C 1.38820 * 120.00190 * 174.07144 * 12 11 10 15 15 N 1.31623 * 119.99467 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00018 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46740 * 179.97438 * 16 14 12 18 18 H 1.48496 * 109.47499 * 299.99993 * 16 14 12 19 19 H 1.48504 * 109.47201 * 60.00433 * 16 14 12 20 20 C 1.53177 * 109.54067 * 175.02187 * 10 9 8 21 21 C 1.53285 * 109.06031 * 176.85195 * 20 10 9 22 22 O 1.42900 * 109.46053 * 302.44532 * 21 20 10 23 23 C 1.42904 * 114.09943 * 61.15813 * 22 21 20 24 24 C 1.53087 * 109.41425 * 298.84255 * 23 22 21 25 25 N 1.30172 * 106.39350 * 0.26799 * 4 3 2 26 26 O 1.20925 * 111.60446 * 359.53239 * 25 4 3 27 27 H 1.09005 * 109.47279 * 89.99679 * 1 2 3 28 28 H 1.09004 * 109.46789 * 209.98997 * 1 2 3 29 29 H 1.08992 * 109.47266 * 329.99297 * 1 2 3 30 30 H 1.08003 * 128.00917 * 359.95732 * 3 2 1 31 31 H 1.09007 * 109.46942 * 4.99812 * 5 4 3 32 32 H 1.09001 * 109.47151 * 245.00106 * 5 4 3 33 33 H 0.97003 * 119.99486 * 0.02562 * 8 6 5 34 34 H 1.08999 * 109.47192 * 56.66264 * 9 8 6 35 35 H 1.09005 * 109.46742 * 296.66034 * 9 8 6 36 36 H 0.97006 * 119.99845 * 242.22108 * 11 10 9 37 37 H 0.97000 * 119.99280 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.52689 * 296.83908 * 20 10 9 39 39 H 1.08998 * 109.52129 * 57.03151 * 20 10 9 40 40 H 1.09007 * 109.45488 * 182.44942 * 21 20 10 41 41 H 1.09001 * 109.46894 * 62.45037 * 21 20 10 42 42 H 1.08998 * 109.48150 * 178.85483 * 23 22 21 43 43 H 1.09003 * 109.48614 * 58.82955 * 23 22 21 44 44 H 1.08995 * 109.52701 * 297.70105 * 24 23 22 45 45 H 1.09004 * 109.57496 * 177.54261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9210 1.3001 0.0014 6 6 5.7661 0.8514 1.1656 7 8 5.3535 -0.0033 1.9207 8 7 6.9806 1.3998 1.3678 9 6 7.8024 0.9632 2.4992 10 6 9.1552 1.6765 2.4522 11 7 8.9439 3.1254 2.4060 12 6 8.3157 3.7593 3.4445 13 1 7.8913 3.1816 4.2523 14 6 8.2246 5.1444 3.4592 15 7 8.7425 5.8484 2.4750 16 14 7.3671 6.0090 4.8757 17 1 7.4054 7.4771 4.6554 18 1 5.9549 5.5558 4.9503 19 1 8.0599 5.6816 6.1478 20 6 9.9677 1.3167 3.6999 21 6 11.3495 1.9731 3.6039 22 8 12.0001 1.5402 2.4075 23 6 11.3078 1.8904 1.2073 24 6 9.9263 1.2309 1.2059 25 7 3.4764 -0.7563 -0.0049 26 8 2.3095 -1.0736 0.0004 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8898 0.5139 30 1 2.0345 2.1271 -0.0006 31 1 4.7161 2.3669 0.0910 32 1 5.4547 1.1095 -0.9297 33 1 7.3104 2.0837 0.7640 34 1 7.9574 -0.1141 2.4414 35 1 7.2950 1.2078 3.4325 36 1 9.2490 3.6358 1.6395 37 1 8.6784 6.8162 2.4851 38 1 9.4508 1.6794 4.5884 39 1 10.0823 0.2345 3.7604 40 1 11.9488 1.6858 4.4679 41 1 11.2363 3.0571 3.5842 42 1 11.8771 1.5436 0.3449 43 1 11.1938 2.9732 1.1561 44 1 10.0400 0.1470 1.2162 45 1 9.3791 1.5313 0.3123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699883239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:57 Heat of formation + Delta-G solvation = -37.248469 kcal Electronic energy + Delta-G solvation = -28064.940912 eV Core-core repulsion = 24085.098104 eV Total energy + Delta-G solvation = -3979.842808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.88991 -41.13091 -40.17917 -37.34857 -35.63063 -35.12192 -34.25108 -33.87733 -31.98783 -31.00443 -30.69904 -28.59956 -27.85010 -25.94101 -24.49108 -24.12267 -23.56493 -22.02902 -20.76811 -20.08671 -19.11629 -18.75569 -18.20164 -17.87073 -17.20359 -17.05002 -16.77390 -16.43436 -16.22050 -15.86343 -15.52941 -15.41175 -15.14804 -14.59772 -14.55853 -14.23197 -13.94672 -13.91534 -13.77736 -13.69937 -13.25860 -13.18070 -13.11241 -12.92626 -12.82348 -12.68846 -12.27160 -12.12244 -12.02405 -11.75596 -11.43201 -11.23769 -11.15233 -11.01273 -10.79132 -10.33380 -10.20348 -9.95654 -8.98450 -7.91140 -5.17793 0.59500 1.23149 1.45990 1.48444 1.52285 1.65691 2.26841 2.37802 2.56734 3.06602 3.15303 3.41228 3.56483 3.73905 3.86144 3.91612 4.00104 4.13974 4.14391 4.22133 4.25059 4.32749 4.46528 4.50895 4.59627 4.68239 4.74865 4.75738 4.76624 4.80965 4.88133 4.93238 5.01552 5.04196 5.07885 5.20425 5.26269 5.28530 5.33268 5.54684 5.61761 6.30429 6.35824 6.62478 7.28617 7.39160 7.40289 8.07617 8.36324 9.30443 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012250 B = 0.003588 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.118385 B = 7801.404479 C = 9387.452907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.036 4.036 3 C -0.239 4.239 4 C 0.015 3.985 5 C -0.058 4.058 6 C 0.507 3.493 7 O -0.588 6.588 8 N -0.695 5.695 9 C 0.128 3.872 10 C 0.189 3.811 11 N -0.711 5.711 12 C -0.218 4.218 13 H 0.062 0.938 14 C -0.055 4.055 15 N -0.956 5.956 16 Si 0.948 3.052 17 H -0.297 1.297 18 H -0.289 1.289 19 H -0.286 1.286 20 C -0.151 4.151 21 C 0.076 3.924 22 O -0.398 6.398 23 C 0.064 3.936 24 C -0.143 4.143 25 N -0.382 5.382 26 O 0.085 5.915 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.198 0.802 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.379 0.621 37 H 0.249 0.751 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.037 0.963 42 H 0.112 0.888 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.333 -8.536 -8.696 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.260 4.260 4 C -0.144 4.144 5 C -0.098 4.098 6 C 0.293 3.707 7 O -0.468 6.468 8 N -0.345 5.345 9 C 0.001 3.999 10 C 0.098 3.902 11 N -0.352 5.352 12 C -0.350 4.350 13 H 0.080 0.920 14 C -0.248 4.248 15 N -0.607 5.607 16 Si 0.779 3.221 17 H -0.224 1.224 18 H -0.216 1.216 19 H -0.212 1.212 20 C -0.191 4.191 21 C 0.000 4.000 22 O -0.317 6.317 23 C -0.012 4.012 24 C -0.181 4.181 25 N -0.087 5.087 26 O 0.018 5.982 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.215 0.785 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.213 0.787 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.055 0.945 42 H 0.130 0.870 43 H 0.058 0.942 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.640 -10.211 -8.007 15.589 hybrid contribution -0.689 2.202 0.737 2.422 sum -9.328 -8.008 -7.270 14.283 Atomic orbital electron populations 1.20561 0.80663 1.05868 1.05636 1.25344 0.98146 0.85291 1.01131 1.22770 0.90084 1.02544 1.10647 1.23227 0.97599 0.90041 1.03549 1.20088 0.89634 1.01594 0.98508 1.20847 0.81954 0.81271 0.86600 1.90683 1.72683 1.34210 1.49255 1.45662 1.16904 1.41652 1.30312 1.21620 0.92482 0.97396 0.88401 1.19977 0.91027 0.84397 0.94769 1.42464 1.69498 1.01506 1.21720 1.19134 1.26405 0.89050 1.00367 0.91988 1.25156 1.02827 0.97032 0.99813 1.69737 1.51974 1.05301 1.33655 0.85609 0.78450 0.77488 0.80504 1.22363 1.21624 1.21229 1.22460 0.96876 1.00449 0.99319 1.22386 0.92666 0.97867 0.87130 1.87797 1.49295 1.79966 1.14650 1.22589 0.92634 0.98523 0.87466 1.22304 0.96475 1.01641 0.97665 1.73851 0.97494 1.17544 1.19801 1.84778 1.11300 1.34463 1.67640 0.87354 0.89079 0.87370 0.78527 0.84250 0.84680 0.75304 0.92274 0.94853 0.78709 0.94214 0.92132 0.90687 0.88411 0.94482 0.87001 0.94225 0.89725 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 71.24 0.74 0.08 16 2 C -0.04 -0.74 7.49 25.04 0.19 -0.55 16 3 C -0.24 -5.32 11.05 22.40 0.25 -5.07 16 4 C 0.01 0.43 6.10 43.58 0.27 0.69 16 5 C -0.06 -1.49 6.30 29.10 0.18 -1.31 16 6 C 0.51 17.52 7.82 87.66 0.69 18.20 16 7 O -0.59 -25.65 15.60 -3.02 -0.05 -25.70 16 8 N -0.69 -22.83 5.13 -463.06 -2.38 -25.21 16 9 C 0.13 4.57 4.37 86.38 0.38 4.94 16 10 C 0.19 6.49 0.41 3.72 0.00 6.49 16 11 N -0.71 -29.74 3.61 -302.81 -1.09 -30.83 16 12 C -0.22 -10.67 8.67 84.04 0.73 -9.94 16 13 H 0.06 3.12 6.78 -2.91 -0.02 3.10 16 14 C -0.05 -2.87 5.50 84.86 0.47 -2.41 16 15 N -0.96 -52.74 13.07 21.65 0.28 -52.46 16 16 Si 0.95 44.11 29.55 68.60 2.03 46.14 16 17 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 20 C -0.15 -5.13 4.80 30.75 0.15 -4.98 16 21 C 0.08 2.61 6.68 72.08 0.48 3.09 16 22 O -0.40 -13.21 10.77 -148.98 -1.60 -14.81 16 23 C 0.06 1.90 6.67 72.01 0.48 2.38 16 24 C -0.14 -4.03 4.80 30.68 0.15 -3.88 16 25 N -0.38 -12.79 11.48 -49.56 -0.57 -13.36 16 26 O 0.09 2.42 11.20 71.68 0.80 3.23 16 27 H 0.11 0.60 8.14 -2.38 -0.02 0.59 16 28 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.14 2.89 8.14 -2.38 -0.02 2.87 16 32 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.41 12.34 7.42 -92.71 -0.69 11.65 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.03 1.39 7.47 -2.38 -0.02 1.38 16 36 H 0.38 16.94 6.81 -92.70 -0.63 16.30 16 37 H 0.25 13.69 8.31 -92.71 -0.77 12.91 16 38 H 0.06 2.25 7.19 -2.39 -0.02 2.24 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.10 2.91 8.14 -2.38 -0.02 2.90 16 41 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 42 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.04 1.34 7.14 -2.39 -0.02 1.33 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 2.14 7.37 -2.39 -0.02 2.12 16 Total: -1.00 -70.97 368.54 2.27 -68.69 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.29 Total: 36.58 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.14 Total: 7.72 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -3.75 Total: -121.85 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.85 Total: -37.28 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.97 2.27 -68.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699883239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.445 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds