Wall clock time and date at job start Tue Mar 31 2020 14:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35275 * 126.71130 * 2 1 4 4 C 1.41927 * 103.95950 * 180.11290 * 3 2 1 5 5 O 1.35706 * 126.88252 * 179.91061 * 4 3 2 6 6 C 1.42898 * 117.00443 * 179.70638 * 5 4 3 7 7 C 1.50703 * 109.47171 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.47027 * 125.64300 * 359.68625 * 9 7 6 11 11 C 1.54343 * 107.26182 * 178.85335 * 10 9 7 12 12 C 1.55157 * 103.01877 * 338.14305 * 11 10 9 13 13 H 1.09000 * 111.03395 * 277.21494 * 12 11 10 14 14 C 1.53002 * 111.00204 * 153.38356 * 12 11 10 15 15 H 1.09000 * 109.46653 * 306.34740 * 14 12 11 16 16 C 1.52995 * 109.47155 * 66.34658 * 14 12 11 17 17 N 1.46498 * 109.46965 * 186.34874 * 14 12 11 18 18 C 1.36937 * 120.00284 * 154.99941 * 17 14 12 19 19 H 1.08007 * 119.99456 * 359.97438 * 18 17 14 20 20 C 1.38810 * 120.00118 * 179.97438 * 18 17 14 21 21 N 1.31609 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99696 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47371 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47078 * 119.99827 * 22 20 18 25 25 H 1.48503 * 109.46938 * 239.99828 * 22 20 18 26 26 C 1.47421 * 125.65118 * 179.97438 * 9 7 6 27 27 N 1.30622 * 106.24267 * 359.64857 * 4 3 2 28 28 O 1.20914 * 111.49559 * 0.22646 * 27 4 3 29 29 H 1.08999 * 109.47321 * 180.30846 * 1 2 3 30 30 H 1.09000 * 109.46767 * 300.31140 * 1 2 3 31 31 H 1.08996 * 109.46675 * 60.30217 * 1 2 3 32 32 H 1.07997 * 128.02033 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47259 * 300.00350 * 6 5 4 34 34 H 1.09001 * 109.47074 * 60.00372 * 6 5 4 35 35 H 1.09000 * 109.88487 * 298.39501 * 10 9 7 36 36 H 1.09000 * 109.88131 * 59.56990 * 10 9 7 37 37 H 1.09003 * 110.84808 * 219.67533 * 11 10 9 38 38 H 1.08995 * 110.66652 * 96.52412 * 11 10 9 39 39 H 1.09005 * 109.47234 * 179.97438 * 16 14 12 40 40 H 1.08995 * 109.47469 * 300.00061 * 16 14 12 41 41 H 1.09000 * 109.47273 * 60.00462 * 16 14 12 42 42 H 0.97005 * 120.00041 * 334.99465 * 17 14 12 43 43 H 0.97006 * 119.99669 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.36496 * 322.93165 * 26 9 7 45 45 H 1.09005 * 110.36628 * 85.14046 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0844 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7954 1.2216 -0.0054 6 6 5.9989 0.4511 -0.0014 7 6 7.1881 1.3768 -0.0046 8 8 7.0214 2.5780 -0.0103 9 7 8.4368 0.8697 -0.0021 10 6 8.7811 -0.5596 0.0102 11 6 10.3210 -0.6600 -0.0210 12 6 10.7487 0.7094 -0.6118 13 1 10.6897 0.7016 -1.7001 14 6 12.1541 1.0934 -0.1445 15 1 12.1989 1.0521 0.9438 16 6 13.1725 0.1158 -0.7343 17 7 12.4641 2.4525 -0.5948 18 6 13.3841 3.2058 0.0844 19 1 13.8808 2.7980 0.9524 20 6 13.6782 4.4934 -0.3427 21 7 13.0733 4.9900 -1.4008 22 14 14.9338 5.5207 0.5835 23 1 15.4667 4.7380 1.7275 24 1 16.0469 5.8837 -0.3298 25 1 14.2853 6.7571 1.0895 26 6 9.6836 1.6564 -0.0053 27 7 3.4765 -0.7622 0.0037 28 8 2.3085 -1.0749 0.0053 29 1 -0.3634 -1.0276 0.0055 30 1 -0.3633 0.5187 0.8872 31 1 -0.3632 0.5091 -0.8927 32 1 2.0313 2.1263 -0.0004 33 1 6.0274 -0.1735 0.8916 34 1 6.0282 -0.1817 -0.8884 35 1 8.3956 -1.0260 0.9168 36 1 8.3617 -1.0495 -0.8685 37 1 10.6434 -1.4765 -0.6671 38 1 10.7187 -0.7868 0.9859 39 1 14.1738 0.3896 -0.4018 40 1 12.9418 -0.8954 -0.3992 41 1 13.1276 0.1570 -1.8226 42 1 12.0178 2.8188 -1.3743 43 1 13.2786 5.8900 -1.6990 44 1 9.5695 2.5456 -0.6251 45 1 9.9580 1.9365 1.0118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699936231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:04 Heat of formation + Delta-G solvation = 9.128173 kcal Electronic energy + Delta-G solvation = -26783.761028 eV Core-core repulsion = 22805.929262 eV Total energy + Delta-G solvation = -3977.831766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.20143 -40.29315 -38.99576 -37.56785 -35.23327 -34.19057 -32.86239 -32.54204 -30.75902 -29.47620 -28.49946 -28.25464 -27.51763 -23.97798 -23.72096 -23.44774 -21.72924 -21.39160 -19.68766 -19.35197 -18.26284 -18.16451 -17.25543 -17.13198 -16.83769 -16.45480 -15.84732 -15.38172 -14.71901 -14.37098 -14.27453 -14.03580 -13.80424 -13.70535 -13.69165 -13.54571 -13.07932 -12.88090 -12.75080 -12.61086 -12.21292 -12.11529 -11.89483 -11.70101 -11.44484 -11.35205 -10.90573 -10.79361 -10.61544 -10.57888 -10.20857 -9.93663 -9.85238 -9.81299 -9.62918 -9.50261 -8.91811 -8.61524 -6.96303 -5.75280 -3.04593 1.07411 1.96385 2.06837 2.51731 2.75283 3.21751 3.44511 3.49746 3.52345 3.86756 4.23478 4.42953 4.57477 4.59790 4.61536 4.72281 4.77511 4.84001 4.87577 4.91476 4.96918 5.16996 5.26943 5.30927 5.41360 5.54811 5.55472 5.62107 5.85328 5.86018 5.89482 6.01642 6.13982 6.24416 6.30872 6.36515 6.52387 6.60645 6.69844 6.83052 7.05471 7.46330 7.71292 7.91800 8.09117 8.42542 9.54061 10.10462 10.44754 11.47220 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002195 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.835813 B =12754.413156 C =13739.380161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.215 3.785 5 O -0.256 6.256 6 C 0.052 3.948 7 C 0.528 3.472 8 O -0.514 6.514 9 N -0.615 5.615 10 C 0.095 3.905 11 C -0.123 4.123 12 C -0.102 4.102 13 H 0.082 0.918 14 C 0.185 3.815 15 H 0.049 0.951 16 C -0.164 4.164 17 N -0.725 5.725 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.122 3.878 27 N -0.413 5.413 28 O 0.098 5.902 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.056 -16.596 2.576 28.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.160 6.160 6 C -0.027 4.027 7 C 0.314 3.686 8 O -0.389 6.389 9 N -0.351 5.351 10 C -0.028 4.028 11 C -0.162 4.162 12 C -0.122 4.122 13 H 0.100 0.900 14 C 0.074 3.926 15 H 0.067 0.933 16 C -0.224 4.224 17 N -0.366 5.366 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.001 3.999 27 N -0.141 5.141 28 O 0.038 5.962 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.190 -16.525 2.704 27.799 hybrid contribution 0.500 1.295 0.145 1.396 sum -21.691 -15.230 2.849 26.656 Atomic orbital electron populations 1.20389 0.83452 1.04933 1.04467 1.24353 0.96490 0.85560 1.00919 1.21813 0.88275 1.01827 1.13508 1.22074 0.88481 0.88015 0.99721 1.86295 1.10009 1.30802 1.88941 1.22462 0.82198 0.93497 1.04500 1.19442 0.82594 0.88626 0.77954 1.90798 1.84742 1.14984 1.48353 1.48471 1.05272 1.08352 1.73004 1.22168 0.97519 0.81744 1.01370 1.22675 0.92501 0.98476 1.02514 1.22683 0.95916 0.93095 1.00497 0.89988 1.20157 0.88971 0.86562 0.96882 0.93256 1.22437 1.01192 0.97835 1.00918 1.42428 1.49311 1.10219 1.34638 1.19241 1.14858 0.94969 1.07916 0.91147 1.24741 1.00381 0.97545 0.98229 1.69665 1.45523 1.16623 1.26048 0.86151 0.80914 0.80446 0.78861 1.20599 1.21943 1.21884 1.22312 0.80327 0.94996 1.02218 1.74157 0.97938 1.14205 1.27791 1.84789 1.10302 1.32008 1.69139 0.89599 0.88832 0.88825 0.80314 0.88756 0.88709 0.91403 0.91425 0.89863 0.90194 0.92721 0.94391 0.93497 0.78252 0.93543 0.89564 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.45 36.01 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.18 11.11 -39.23 -0.44 -2.62 16 4 C 0.21 2.69 8.01 -16.66 -0.13 2.56 16 5 O -0.26 -3.74 9.74 -38.73 -0.38 -4.12 16 6 C 0.05 0.66 5.33 36.01 0.19 0.85 16 7 C 0.53 8.52 7.93 -10.98 -0.09 8.43 16 8 O -0.51 -10.76 16.76 -14.35 -0.24 -11.00 16 9 N -0.61 -8.98 3.33 -170.52 -0.57 -9.54 16 10 C 0.10 0.99 6.49 -3.05 -0.02 0.97 16 11 C -0.12 -1.35 5.59 -24.89 -0.14 -1.49 16 12 C -0.10 -1.55 2.63 -88.48 -0.23 -1.78 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.18 3.41 2.41 -67.93 -0.16 3.24 16 15 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 16 C -0.16 -2.74 9.34 37.16 0.35 -2.39 16 17 N -0.72 -17.53 4.82 -53.43 -0.26 -17.79 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.37 5.50 -17.44 -0.10 -0.46 16 21 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 22 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 C 0.12 2.10 6.08 -2.54 -0.02 2.09 16 27 N -0.41 -4.94 11.54 30.38 0.35 -4.59 16 28 O 0.10 0.96 11.19 17.07 0.19 1.16 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 38 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.04 0.51 7.50 -51.93 -0.39 0.12 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.09 1.76 8.04 -51.93 -0.42 1.34 16 45 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -35.14 380.73 -7.28 -42.42 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.00 Total: 5.19 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.82 Total: 2.57 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.25 Total: -59.49 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.43 Total: -13.96 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.14 -7.28 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699936231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.544 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds