Wall clock time and date at job start Tue Mar 31 2020 14:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35275 * 126.71130 * 2 1 4 4 C 1.41927 * 103.95950 * 180.11290 * 3 2 1 5 5 O 1.35706 * 126.88252 * 179.91061 * 4 3 2 6 6 C 1.42898 * 117.00443 * 179.70638 * 5 4 3 7 7 C 1.50703 * 109.47171 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 5 10 10 C 1.47027 * 125.64300 * 359.68625 * 9 7 6 11 11 C 1.54343 * 107.26182 * 178.85335 * 10 9 7 12 12 C 1.55157 * 103.01877 * 338.14305 * 11 10 9 13 13 H 1.09000 * 111.03395 * 277.21494 * 12 11 10 14 14 C 1.53002 * 111.00204 * 153.38356 * 12 11 10 15 15 H 1.09000 * 109.46653 * 306.34740 * 14 12 11 16 16 C 1.52995 * 109.47155 * 66.34658 * 14 12 11 17 17 N 1.46498 * 109.46965 * 186.34874 * 14 12 11 18 18 C 1.36937 * 120.00284 * 154.99941 * 17 14 12 19 19 H 1.08007 * 119.99456 * 359.97438 * 18 17 14 20 20 C 1.38810 * 120.00118 * 179.97438 * 18 17 14 21 21 N 1.31609 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99696 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47371 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47078 * 119.99827 * 22 20 18 25 25 H 1.48503 * 109.46938 * 239.99828 * 22 20 18 26 26 C 1.47421 * 125.65118 * 179.97438 * 9 7 6 27 27 N 1.30622 * 106.24267 * 359.64857 * 4 3 2 28 28 O 1.20914 * 111.49559 * 0.22646 * 27 4 3 29 29 H 1.08999 * 109.47321 * 180.30846 * 1 2 3 30 30 H 1.09000 * 109.46767 * 300.31140 * 1 2 3 31 31 H 1.08996 * 109.46675 * 60.30217 * 1 2 3 32 32 H 1.07997 * 128.02033 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.47259 * 300.00350 * 6 5 4 34 34 H 1.09001 * 109.47074 * 60.00372 * 6 5 4 35 35 H 1.09000 * 109.88487 * 298.39501 * 10 9 7 36 36 H 1.09000 * 109.88131 * 59.56990 * 10 9 7 37 37 H 1.09003 * 110.84808 * 219.67533 * 11 10 9 38 38 H 1.08995 * 110.66652 * 96.52412 * 11 10 9 39 39 H 1.09005 * 109.47234 * 179.97438 * 16 14 12 40 40 H 1.08995 * 109.47469 * 300.00061 * 16 14 12 41 41 H 1.09000 * 109.47273 * 60.00462 * 16 14 12 42 42 H 0.97005 * 120.00041 * 334.99465 * 17 14 12 43 43 H 0.97006 * 119.99669 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.36496 * 322.93165 * 26 9 7 45 45 H 1.09005 * 110.36628 * 85.14046 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3157 1.0844 0.0000 4 6 3.6245 0.5356 -0.0027 5 8 4.7954 1.2216 -0.0054 6 6 5.9989 0.4511 -0.0014 7 6 7.1881 1.3768 -0.0046 8 8 7.0214 2.5780 -0.0103 9 7 8.4368 0.8697 -0.0021 10 6 8.7811 -0.5596 0.0102 11 6 10.3210 -0.6600 -0.0210 12 6 10.7487 0.7094 -0.6118 13 1 10.6897 0.7016 -1.7001 14 6 12.1541 1.0934 -0.1445 15 1 12.1989 1.0521 0.9438 16 6 13.1725 0.1158 -0.7343 17 7 12.4641 2.4525 -0.5948 18 6 13.3841 3.2058 0.0844 19 1 13.8808 2.7980 0.9524 20 6 13.6782 4.4934 -0.3427 21 7 13.0733 4.9900 -1.4008 22 14 14.9338 5.5207 0.5835 23 1 15.4667 4.7380 1.7275 24 1 16.0469 5.8837 -0.3298 25 1 14.2853 6.7571 1.0895 26 6 9.6836 1.6564 -0.0053 27 7 3.4765 -0.7622 0.0037 28 8 2.3085 -1.0749 0.0053 29 1 -0.3634 -1.0276 0.0055 30 1 -0.3633 0.5187 0.8872 31 1 -0.3632 0.5091 -0.8927 32 1 2.0313 2.1263 -0.0004 33 1 6.0274 -0.1735 0.8916 34 1 6.0282 -0.1817 -0.8884 35 1 8.3956 -1.0260 0.9168 36 1 8.3617 -1.0495 -0.8685 37 1 10.6434 -1.4765 -0.6671 38 1 10.7187 -0.7868 0.9859 39 1 14.1738 0.3896 -0.4018 40 1 12.9418 -0.8954 -0.3992 41 1 13.1276 0.1570 -1.8226 42 1 12.0178 2.8188 -1.3743 43 1 13.2786 5.8900 -1.6990 44 1 9.5695 2.5456 -0.6251 45 1 9.9580 1.9365 1.0118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699936231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:03 Heat of formation + Delta-G solvation = -16.142923 kcal Electronic energy + Delta-G solvation = -26784.856865 eV Core-core repulsion = 22805.929262 eV Total energy + Delta-G solvation = -3978.927603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.97008 -41.48807 -40.05516 -38.88696 -36.84561 -34.80223 -34.36425 -33.59515 -32.27705 -30.60870 -30.04986 -29.04100 -28.43445 -25.92057 -24.63524 -24.50443 -22.93396 -22.36544 -21.10965 -20.50020 -19.28403 -18.97529 -18.93967 -18.03409 -17.98775 -17.58159 -17.09712 -16.68931 -16.28189 -15.67171 -15.42010 -15.20227 -14.97417 -14.84207 -14.53681 -14.27637 -14.21969 -13.91977 -13.85510 -13.60653 -13.42916 -13.23830 -13.13215 -12.92040 -12.91107 -12.72948 -12.37828 -12.17129 -12.15252 -12.06682 -11.74452 -11.55266 -11.39684 -11.17124 -10.96124 -10.53528 -10.29877 -9.84418 -9.00059 -7.93855 -5.21374 0.42105 1.07362 1.15533 1.27702 1.44700 1.45983 1.55295 2.05787 2.30060 2.55277 3.05286 3.19470 3.40389 3.56636 3.65881 3.78161 3.78706 3.88138 3.88433 3.97431 4.15325 4.27690 4.36747 4.39857 4.52257 4.62451 4.66559 4.76320 4.79679 4.84430 4.85533 4.89952 4.95422 5.03977 5.10097 5.18958 5.27313 5.30055 5.40254 5.53120 5.65006 5.78533 6.28364 6.29709 6.84707 7.18714 7.34204 8.12305 8.32743 9.30039 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002195 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.835813 B =12754.413156 C =13739.380161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.254 4.254 4 C 0.188 3.812 5 O -0.285 6.285 6 C 0.064 3.936 7 C 0.521 3.479 8 O -0.578 6.578 9 N -0.611 5.611 10 C 0.089 3.911 11 C -0.111 4.111 12 C -0.092 4.092 13 H 0.078 0.922 14 C 0.178 3.822 15 H 0.048 0.952 16 C -0.152 4.152 17 N -0.739 5.739 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.082 4.082 21 N -0.972 5.972 22 Si 0.968 3.032 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.299 1.299 26 C 0.125 3.875 27 N -0.427 5.427 28 O 0.095 5.905 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.192 0.808 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.039 0.961 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.453 -20.173 3.488 31.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 C -0.276 4.276 4 C -0.008 4.008 5 O -0.191 6.191 6 C -0.014 4.014 7 C 0.309 3.691 8 O -0.457 6.457 9 N -0.345 5.345 10 C -0.032 4.032 11 C -0.149 4.149 12 C -0.113 4.113 13 H 0.096 0.904 14 C 0.070 3.930 15 H 0.066 0.934 16 C -0.212 4.212 17 N -0.379 5.379 18 C -0.361 4.361 19 H 0.096 0.904 20 C -0.274 4.274 21 N -0.623 5.623 22 Si 0.798 3.202 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.227 1.227 26 C 0.003 3.997 27 N -0.155 5.155 28 O 0.035 5.965 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.210 0.790 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.052 0.948 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.201 0.799 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.574 -20.220 3.649 31.272 hybrid contribution 0.819 2.305 -0.108 2.449 sum -22.755 -17.915 3.541 29.177 Atomic orbital electron populations 1.20690 0.79788 1.06545 1.06113 1.25124 0.98042 0.83985 0.97885 1.22157 0.87452 1.03218 1.14787 1.22445 0.88515 0.88726 1.01157 1.86238 1.11086 1.32274 1.89530 1.22425 0.80264 0.92214 1.06498 1.20180 0.83830 0.88396 0.76691 1.90760 1.85752 1.17823 1.51370 1.48530 1.04048 1.10121 1.71776 1.22547 0.97422 0.78968 1.04245 1.22722 0.92637 0.96070 1.03444 1.22501 0.93063 0.95462 1.00225 0.90378 1.20446 0.91445 0.84286 0.96864 0.93387 1.22265 0.99075 0.99471 1.00388 1.42680 1.48675 1.12483 1.34020 1.19649 1.14028 0.95058 1.07395 0.90395 1.25541 1.03046 0.99186 0.99612 1.69831 1.47754 1.16614 1.28146 0.85137 0.78457 0.78574 0.78029 1.18713 1.22210 1.22720 1.22039 0.82699 0.94658 1.00301 1.74126 0.99071 1.13953 1.28371 1.84745 1.10055 1.32833 1.68903 0.88022 0.86998 0.87040 0.79036 0.86417 0.86568 0.88380 0.88696 0.86616 0.89078 0.94761 0.89886 0.94032 0.79937 0.94340 0.94257 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.15 10.45 71.24 0.74 0.59 16 2 C 0.01 0.17 7.48 25.00 0.19 0.36 16 3 C -0.25 -4.57 11.11 22.50 0.25 -4.32 16 4 C 0.19 4.66 8.01 85.79 0.69 5.35 16 5 O -0.29 -8.50 9.74 -71.23 -0.69 -9.19 16 6 C 0.06 1.57 5.33 71.24 0.38 1.95 16 7 C 0.52 17.19 7.93 87.66 0.69 17.88 16 8 O -0.58 -25.84 16.76 16.01 0.27 -25.58 16 9 N -0.61 -17.58 3.33 -811.80 -2.70 -20.28 16 10 C 0.09 1.54 6.49 86.73 0.56 2.10 16 11 C -0.11 -1.98 5.59 31.79 0.18 -1.81 16 12 C -0.09 -2.73 2.63 -9.41 -0.02 -2.75 16 13 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 14 C 0.18 6.44 2.41 44.99 0.11 6.55 16 15 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 16 C -0.15 -4.76 9.34 71.98 0.67 -4.09 16 17 N -0.74 -36.73 4.82 -322.94 -1.56 -38.28 16 18 C -0.23 -12.72 9.93 84.03 0.83 -11.89 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 21 N -0.97 -61.59 13.06 21.65 0.28 -61.31 16 22 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 26 C 0.13 4.49 6.08 86.85 0.53 5.02 16 27 N -0.43 -9.74 11.54 -172.60 -1.99 -11.73 16 28 O 0.09 1.72 11.19 71.26 0.80 2.51 16 29 H 0.10 -0.05 8.14 -2.39 -0.02 -0.06 16 30 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.44 8.13 -2.39 -0.02 1.42 16 38 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 39 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.08 1.86 7.50 -2.39 -0.02 1.84 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.37 20.28 7.80 -92.70 -0.72 19.56 16 43 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 44 H 0.04 1.75 8.04 -2.39 -0.02 1.73 16 45 H 0.06 2.20 8.04 -2.38 -0.02 2.18 16 Total: -1.00 -83.08 380.73 2.98 -80.11 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.27 Total: 23.68 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 6.27 Total: 10.58 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.96 Total: -131.61 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: 0.37 Total: -32.26 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -83.08 2.98 -80.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699936231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.965 kcal (2) G-P(sol) polarization free energy of solvation -83.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds