Wall clock time and date at job start Tue Mar 31 2020 14:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35265 * 126.70855 * 2 1 4 4 C 1.41932 * 103.95969 * 180.10603 * 3 2 1 5 5 O 1.35707 * 126.87861 * 179.90914 * 4 3 2 6 6 C 1.42901 * 116.99829 * 179.71197 * 5 4 3 7 7 C 1.50707 * 109.46992 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34768 * 119.99956 * 179.97438 * 7 6 5 10 10 C 1.47024 * 125.65058 * 359.95730 * 9 7 6 11 11 C 1.54319 * 107.27496 * 178.97415 * 10 9 7 12 12 C 1.55156 * 102.93994 * 337.80935 * 11 10 9 13 13 H 1.09002 * 111.00677 * 277.42342 * 12 11 10 14 14 C 1.52999 * 111.00468 * 153.57606 * 12 11 10 15 15 H 1.09008 * 109.47272 * 303.81763 * 14 12 11 16 16 C 1.52995 * 109.47380 * 183.81799 * 14 12 11 17 17 N 1.46507 * 109.47347 * 63.81523 * 14 12 11 18 18 C 1.36938 * 119.99662 * 205.00296 * 17 14 12 19 19 H 1.07991 * 120.00582 * 359.97438 * 18 17 14 20 20 C 1.38819 * 119.99342 * 179.97438 * 18 17 14 21 21 N 1.31618 * 120.00308 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99715 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47333 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47016 * 120.00332 * 22 20 18 25 25 H 1.48505 * 109.47321 * 239.99914 * 22 20 18 26 26 C 1.47423 * 125.64947 * 179.97438 * 9 7 6 27 27 N 1.30616 * 106.23973 * 359.64335 * 4 3 2 28 28 O 1.20909 * 111.49878 * 0.22646 * 27 4 3 29 29 H 1.09000 * 109.46771 * 180.31594 * 1 2 3 30 30 H 1.08994 * 109.47308 * 300.31548 * 1 2 3 31 31 H 1.09000 * 109.46717 * 60.31702 * 1 2 3 32 32 H 1.08000 * 128.02327 * 359.97438 * 3 2 1 33 33 H 1.08996 * 109.47475 * 59.99598 * 6 5 4 34 34 H 1.08999 * 109.46665 * 299.99282 * 6 5 4 35 35 H 1.09001 * 109.88305 * 59.55730 * 10 9 7 36 36 H 1.09003 * 110.00794 * 298.46592 * 10 9 7 37 37 H 1.08999 * 110.72475 * 219.44178 * 11 10 9 38 38 H 1.09009 * 110.71846 * 96.16634 * 11 10 9 39 39 H 1.09002 * 109.47575 * 185.08683 * 16 14 12 40 40 H 1.09004 * 109.47373 * 305.07927 * 16 14 12 41 41 H 1.08996 * 109.47439 * 65.08216 * 16 14 12 42 42 H 0.96994 * 119.99940 * 24.99912 * 17 14 12 43 43 H 0.96991 * 120.00082 * 180.02562 * 21 20 18 44 44 H 1.09003 * 110.36805 * 85.25223 * 26 9 7 45 45 H 1.09000 * 110.36623 * 322.93408 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3156 1.0844 0.0000 4 6 3.6245 0.5356 -0.0025 5 8 4.7953 1.2217 -0.0052 6 6 5.9988 0.4512 -0.0011 7 6 7.1880 1.3770 -0.0055 8 8 7.0212 2.5783 -0.0121 9 7 8.4367 0.8700 -0.0022 10 6 8.7812 -0.5593 0.0066 11 6 10.3209 -0.6597 -0.0189 12 6 10.7486 0.7089 -0.6116 13 1 10.6892 0.6991 -1.6999 14 6 12.1539 1.0936 -0.1448 15 1 12.1865 1.0976 0.9448 16 6 12.5022 2.4876 -0.6705 17 7 13.1224 0.1218 -0.6587 18 6 14.3102 -0.0721 -0.0054 19 1 14.5332 0.4915 0.8883 20 6 15.2275 -0.9933 -0.4921 21 7 14.9559 -1.6799 -1.5816 22 14 16.8481 -1.2574 0.3986 23 1 16.9102 -0.3693 1.5872 24 1 16.9487 -2.6736 0.8337 25 1 17.9736 -0.9396 -0.5167 26 6 9.6835 1.6567 -0.0064 27 7 3.4765 -0.7622 0.0040 28 8 2.3085 -1.0749 0.0056 29 1 -0.3633 -1.0277 0.0057 30 1 -0.3633 0.5187 0.8871 31 1 -0.3633 0.5089 -0.8928 32 1 2.0312 2.1263 -0.0004 33 1 6.0282 -0.1816 -0.8880 34 1 6.0273 -0.1731 0.8919 35 1 8.3633 -1.0468 -0.8742 36 1 8.3938 -1.0307 0.9098 37 1 10.6435 -1.4771 -0.6638 38 1 10.7160 -0.7836 0.9895 39 1 13.5350 2.7247 -0.4151 40 1 12.3821 2.5079 -1.7537 41 1 11.8378 3.2233 -0.2174 42 1 12.9222 -0.3842 -1.4616 43 1 15.5967 -2.3238 -1.9215 44 1 9.9589 1.9366 1.0104 45 1 9.5693 2.5451 -0.6275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699936233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:10 Heat of formation + Delta-G solvation = 8.064126 kcal Electronic energy + Delta-G solvation = -26640.078258 eV Core-core repulsion = 22662.200352 eV Total energy + Delta-G solvation = -3977.877907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.24071 -40.38889 -39.04605 -37.63426 -35.27531 -34.22872 -32.90711 -32.52783 -30.80508 -29.61249 -28.80577 -28.17345 -27.17579 -24.48976 -23.76229 -23.14247 -21.72290 -21.40950 -19.69515 -19.46592 -18.31341 -18.20279 -17.29553 -17.18715 -16.91116 -16.54867 -15.98656 -15.43067 -14.77576 -14.33456 -14.30255 -14.04266 -13.83239 -13.72924 -13.64906 -13.43704 -13.22145 -12.91767 -12.66451 -12.63965 -12.50564 -12.17824 -11.97665 -11.76800 -11.47036 -11.25974 -10.92771 -10.76054 -10.62595 -10.44209 -10.22279 -10.04223 -9.89531 -9.87577 -9.67447 -9.54540 -8.95325 -8.74549 -6.99938 -5.80357 -3.08849 1.04097 1.92161 1.99070 2.38256 2.71473 3.13337 3.40644 3.46987 3.48716 3.82699 4.17057 4.39255 4.53787 4.55893 4.68886 4.71031 4.74924 4.80674 4.85040 4.88409 5.06449 5.13378 5.24669 5.26602 5.42378 5.50433 5.51646 5.61778 5.83649 5.84342 5.91500 6.01023 6.10393 6.17550 6.33264 6.39827 6.53446 6.60941 6.63065 6.83592 7.06794 7.33675 7.67904 7.87746 7.95264 8.38123 9.49811 10.06470 10.41495 11.42286 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.001971 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.035347 B =14202.215701 C =14834.096352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.257 6.257 6 C 0.051 3.949 7 C 0.531 3.469 8 O -0.523 6.523 9 N -0.612 5.612 10 C 0.091 3.909 11 C -0.115 4.115 12 C -0.102 4.102 13 H 0.082 0.918 14 C 0.185 3.815 15 H 0.050 0.950 16 C -0.168 4.168 17 N -0.722 5.722 18 C -0.236 4.236 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.116 3.884 27 N -0.411 5.411 28 O 0.099 5.901 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.072 0.928 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.455 2.331 3.115 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.162 6.162 6 C -0.028 4.028 7 C 0.318 3.682 8 O -0.399 6.399 9 N -0.347 5.347 10 C -0.032 4.032 11 C -0.153 4.153 12 C -0.122 4.122 13 H 0.100 0.900 14 C 0.075 3.925 15 H 0.068 0.932 16 C -0.229 4.229 17 N -0.363 5.363 18 C -0.367 4.367 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.006 4.006 27 N -0.138 5.138 28 O 0.039 5.961 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.559 2.289 3.243 27.843 hybrid contribution 0.821 0.175 0.103 0.846 sum -26.738 2.465 3.346 27.059 Atomic orbital electron populations 1.20393 0.83444 1.04996 1.04443 1.24363 0.96514 0.85564 1.00818 1.21793 0.88251 1.01780 1.13679 1.22059 0.88412 0.88044 0.99923 1.86270 1.10020 1.30840 1.89059 1.22456 0.82068 0.93465 1.04779 1.19452 0.82634 0.88550 0.77599 1.90755 1.84945 1.15048 1.49152 1.48426 1.04888 1.08748 1.72639 1.22301 0.98433 0.80893 1.01528 1.22578 0.90836 0.98639 1.03204 1.22690 0.95193 0.93834 1.00525 0.89957 1.20130 0.86232 0.89414 0.96732 0.93212 1.22498 1.01308 0.98338 1.00714 1.42368 1.16736 1.45487 1.31706 1.19266 0.93539 1.17496 1.06444 0.91136 1.24723 0.98786 0.99474 0.97949 1.69660 1.36195 1.28831 1.23414 0.86150 0.84020 0.77475 0.78736 1.20585 1.21932 1.21928 1.22367 0.81632 0.94993 1.01561 1.74173 0.97947 1.14187 1.27531 1.84801 1.10287 1.32000 1.69028 0.89554 0.88830 0.88824 0.80349 0.88547 0.88584 0.91300 0.91305 0.89208 0.90018 0.92494 0.93548 0.94365 0.78295 0.93591 0.90940 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.45 36.01 0.38 0.20 16 2 C -0.01 -0.06 7.48 -35.36 -0.26 -0.33 16 3 C -0.23 -2.03 11.10 -39.23 -0.44 -2.47 16 4 C 0.21 2.54 8.01 -16.66 -0.13 2.41 16 5 O -0.26 -3.51 9.74 -38.74 -0.38 -3.88 16 6 C 0.05 0.61 5.33 36.01 0.19 0.80 16 7 C 0.53 7.73 7.93 -10.99 -0.09 7.65 16 8 O -0.52 -9.59 16.76 -14.36 -0.24 -9.83 16 9 N -0.61 -8.20 3.33 -170.53 -0.57 -8.77 16 10 C 0.09 1.04 6.49 -3.07 -0.02 1.02 16 11 C -0.11 -1.59 6.19 -24.90 -0.15 -1.74 16 12 C -0.10 -1.55 2.63 -88.48 -0.23 -1.78 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 14 C 0.19 3.41 2.40 -67.93 -0.16 3.25 16 15 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 16 C -0.17 -2.94 9.23 37.16 0.34 -2.60 16 17 N -0.72 -16.89 4.88 -53.42 -0.26 -17.15 16 18 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 22 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.12 1.65 5.52 -2.54 -0.01 1.63 16 27 N -0.41 -4.82 11.54 30.38 0.35 -4.47 16 28 O 0.10 0.96 11.19 17.07 0.19 1.15 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.19 8.04 -51.92 -0.42 0.78 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.57 7.60 -51.93 -0.39 0.17 16 42 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 45 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -33.47 380.88 -7.30 -40.77 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.00 Total: 4.98 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.84 Total: 1.14 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.25 Total: -56.98 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.43 Total: -12.56 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.47 -7.30 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699936233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.835 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds