Wall clock time and date at job start Tue Mar 31 2020 13:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 119.99767 * 2 1 4 4 H 1.08004 * 120.00179 * 322.03549 * 3 2 1 5 5 C 1.38810 * 120.00012 * 142.04104 * 3 2 1 6 6 N 1.31617 * 120.00185 * 157.02152 * 5 3 2 7 7 Si 1.86803 * 119.99784 * 337.01410 * 5 3 2 8 8 H 1.48497 * 109.47056 * 95.68703 * 7 5 3 9 9 H 1.48504 * 109.46944 * 215.68088 * 7 5 3 10 10 H 1.48503 * 109.47276 * 335.68544 * 7 5 3 11 11 C 1.46500 * 120.00008 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46935 * 89.99928 * 11 2 1 13 13 C 1.52999 * 109.47051 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99799 * 179.97438 * 14 13 12 16 16 O 1.21675 * 120.00266 * 0.02562 * 15 14 13 17 17 C 1.46684 * 119.99654 * 180.02562 * 15 14 13 18 18 C 1.35668 * 126.13003 * 0.02562 * 17 15 14 19 19 N 1.30946 * 114.18460 * 179.72698 * 18 17 15 20 20 C 1.29420 * 117.36657 * 0.51854 * 19 18 17 21 21 C 1.50706 * 124.80300 * 179.76253 * 20 19 18 22 22 C 1.52996 * 109.46866 * 89.70191 * 21 20 19 23 23 C 1.52997 * 117.49890 * 243.62152 * 22 21 20 24 24 C 1.53000 * 60.00098 * 252.51039 * 23 22 21 25 25 S 1.70948 * 110.39283 * 359.50280 * 20 19 18 26 26 H 1.08999 * 109.47453 * 265.64996 * 1 2 3 27 27 H 1.09004 * 109.47603 * 25.65125 * 1 2 3 28 28 H 1.09000 * 109.47169 * 145.65321 * 1 2 3 29 29 H 0.97008 * 120.00239 * 180.02562 * 6 5 3 30 30 H 1.08994 * 109.47083 * 330.00239 * 11 2 1 31 31 H 1.09004 * 109.46933 * 210.00063 * 11 2 1 32 32 H 1.09003 * 109.46920 * 60.00002 * 12 11 2 33 33 H 1.08994 * 109.47292 * 299.99869 * 12 11 2 34 34 H 1.09003 * 109.46909 * 60.00421 * 13 12 11 35 35 H 1.08994 * 109.47708 * 300.00649 * 13 12 11 36 36 H 0.97002 * 120.00226 * 0.02562 * 14 13 12 37 37 H 1.07993 * 122.90660 * 0.02562 * 18 17 15 38 38 H 1.09000 * 109.47224 * 209.69989 * 21 20 19 39 39 H 1.08994 * 109.47087 * 329.70323 * 21 20 19 40 40 H 1.09006 * 115.55283 * 29.32627 * 22 21 20 41 41 H 1.09006 * 117.50060 * 0.02562 * 23 22 21 42 42 H 1.09004 * 117.50084 * 145.02385 * 23 22 21 43 43 H 1.09005 * 117.50037 * 252.50779 * 24 23 22 44 44 H 1.08995 * 117.51666 * 107.47976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3175 1.3131 0.7394 6 7 4.2043 2.2305 0.4164 7 14 3.6303 0.1824 2.1931 8 1 4.4680 -0.9637 1.7574 9 1 4.3368 0.9338 3.2616 10 1 2.3350 -0.3217 2.7159 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4417 13 6 3.2180 -3.0357 -1.4412 14 7 3.4616 -3.4595 -2.8222 15 6 4.1250 -4.6068 -3.0680 16 8 4.5211 -5.2907 -2.1429 17 6 4.3694 -5.0308 -4.4508 18 6 3.9857 -4.3677 -5.5705 19 7 4.3319 -4.9564 -6.6877 20 6 4.9730 -6.0769 -6.5959 21 6 5.4457 -6.8961 -7.7692 22 6 6.8547 -6.4516 -8.1668 23 6 7.0358 -5.8365 -9.5559 24 6 7.5611 -7.2444 -9.2684 25 16 5.2139 -6.4927 -4.9553 26 1 -0.3634 -0.0779 1.0247 27 1 -0.3634 0.9264 -0.4449 28 1 -0.3633 -0.8485 -0.5798 29 1 5.0206 2.3191 0.9329 30 1 1.6084 -2.0281 0.5147 31 1 3.1499 -1.1381 0.5144 32 1 3.0415 -0.9515 -1.9559 33 1 1.5001 -1.8416 -1.9555 34 1 2.6292 -3.7953 -0.9269 35 1 4.1703 -2.9048 -0.9275 36 1 3.1461 -2.9141 -3.5598 37 1 3.4460 -3.4328 -5.5427 38 1 5.4617 -7.9505 -7.4934 39 1 4.7680 -6.7508 -8.6104 40 1 7.4693 -6.0573 -7.3574 41 1 6.1510 -5.7480 -10.1864 42 1 7.7696 -5.0372 -9.6607 43 1 8.6404 -7.3715 -9.1839 44 1 7.0222 -8.0828 -9.7096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752030689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:41 Heat of formation + Delta-G solvation = 50.484477 kcal Electronic energy + Delta-G solvation = -23675.284041 eV Core-core repulsion = 20141.998490 eV Total energy + Delta-G solvation = -3533.285551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39923 -39.29032 -37.86413 -36.53457 -34.84860 -32.54512 -31.76267 -30.84401 -28.98822 -26.38247 -25.40714 -24.81555 -22.80304 -22.30760 -21.68985 -21.20412 -20.78824 -19.68746 -18.44992 -17.44229 -16.77352 -15.99196 -15.85355 -15.59573 -15.45145 -15.05394 -14.88322 -14.40743 -14.13738 -13.82699 -13.77114 -13.45652 -13.25200 -13.02638 -12.75269 -12.19762 -12.04325 -11.94507 -11.89185 -11.69589 -11.40671 -11.23741 -10.95412 -10.89055 -10.60790 -10.49469 -10.45327 -10.35135 -9.83374 -9.77017 -9.74507 -9.55881 -9.27208 -9.00056 -8.53767 -6.85400 -6.03352 -3.44732 -0.03833 0.85377 1.38674 2.19774 3.06096 3.18733 3.30357 3.30972 3.46216 3.51671 3.62135 4.26516 4.39350 4.45495 4.50107 4.62508 4.65357 4.90615 4.92581 5.00770 5.11348 5.16748 5.23185 5.32011 5.43403 5.48018 5.57244 5.68160 5.70704 5.74092 5.78797 6.00351 6.08011 6.25139 6.29634 6.41456 6.57822 6.68949 6.72166 6.88436 7.29897 7.40172 8.02081 8.07216 8.34425 8.95294 9.67797 10.08986 11.12100 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.002171 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.770078 B =12891.700145 C =13015.193429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.272 4.272 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.898 5.898 7 Si 0.876 3.124 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.147 4.147 13 C 0.119 3.881 14 N -0.710 5.710 15 C 0.590 3.410 16 O -0.538 6.538 17 C -0.292 4.292 18 C 0.093 3.907 19 N -0.473 5.473 20 C 0.044 3.956 21 C -0.014 4.014 22 C -0.153 4.153 23 C -0.172 4.172 24 C -0.176 4.176 25 S 0.227 5.773 26 H 0.007 0.993 27 H 0.045 0.955 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.401 0.599 37 H 0.182 0.818 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -20.661 -18.653 27.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.335 5.335 3 C -0.401 4.401 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.539 5.539 7 Si 0.706 3.294 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.187 4.187 13 C -0.004 4.004 14 N -0.361 5.361 15 C 0.374 3.626 16 O -0.417 6.417 17 C -0.417 4.417 18 C -0.066 4.066 19 N -0.187 5.187 20 C -0.231 4.231 21 C -0.055 4.055 22 C -0.173 4.173 23 C -0.209 4.209 24 C -0.213 4.213 25 S 0.485 5.515 26 H 0.025 0.975 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.199 0.801 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.391 -21.701 -17.921 28.348 hybrid contribution -0.330 0.754 0.546 0.988 sum 3.062 -20.947 -17.375 27.387 Atomic orbital electron populations 1.21085 0.84548 0.99026 0.97438 1.44033 1.00800 1.01946 1.86769 1.18780 1.06105 0.90844 1.24363 0.90427 1.25487 0.96834 0.96467 0.97678 1.69879 1.08425 1.36162 1.39396 0.86948 0.78043 0.80073 0.84358 1.21155 1.22812 1.19437 1.21033 0.96630 0.87888 0.92868 1.22414 0.99622 0.94433 1.02250 1.21567 1.00954 0.97051 0.80868 1.45883 1.57103 1.22875 1.10265 1.16730 0.78469 0.81510 0.85893 1.90845 1.51586 1.54197 1.45036 1.25855 1.13245 1.03209 0.99345 1.22216 0.98754 1.00639 0.84983 1.66113 1.13707 1.07918 1.30917 1.27415 1.00003 0.96299 0.99383 1.19886 0.95174 0.97002 0.93449 1.22192 0.96067 1.05606 0.93424 1.23059 1.03551 0.96351 0.97928 1.23017 1.00635 0.95343 1.02274 1.84079 1.48896 1.19205 0.99282 0.97526 0.93632 0.95482 0.92661 0.94059 0.92666 0.90395 0.92077 0.91466 0.91162 0.76384 0.80071 0.88900 0.88313 0.87533 0.88366 0.88650 0.88482 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.44 10.70 59.85 0.64 3.08 16 2 N -0.61 -14.32 2.47 -181.12 -0.45 -14.77 16 3 C -0.27 -7.52 9.88 -15.06 -0.15 -7.67 16 4 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 5 C 0.04 1.04 5.29 -17.43 -0.09 0.94 16 6 N -0.90 -27.14 13.97 55.49 0.78 -26.36 16 7 Si 0.88 22.21 25.10 -169.99 -4.27 17.94 16 8 H -0.28 -6.97 6.68 56.52 0.38 -6.59 16 9 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 C 0.14 2.97 4.53 -4.04 -0.02 2.95 16 12 C -0.15 -2.52 5.65 -26.73 -0.15 -2.67 16 13 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16 14 N -0.71 -9.63 5.54 -61.62 -0.34 -9.97 16 15 C 0.59 8.74 7.79 -12.85 -0.10 8.64 16 16 O -0.54 -9.83 16.96 5.21 0.09 -9.74 16 17 C -0.29 -3.58 6.48 -37.09 -0.24 -3.82 16 18 C 0.09 1.00 10.93 -18.85 -0.21 0.79 16 19 N -0.47 -5.22 10.51 -11.50 -0.12 -5.34 16 20 C 0.04 0.41 6.59 -13.29 -0.09 0.32 16 21 C -0.01 -0.09 6.07 -27.88 -0.17 -0.26 16 22 C -0.15 -0.98 5.72 -90.62 -0.52 -1.50 16 23 C -0.17 -1.03 10.18 -26.73 -0.27 -1.30 16 24 C -0.18 -0.87 10.25 -26.73 -0.27 -1.15 16 25 S 0.23 2.32 23.01 -107.50 -2.47 -0.16 16 26 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.04 0.87 8.00 -51.93 -0.42 0.46 16 28 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.04 0.77 8.07 -51.93 -0.42 0.36 16 31 H 0.06 1.28 3.38 -51.93 -0.18 1.11 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 4.37 7.18 -40.82 -0.29 4.07 16 37 H 0.18 1.52 7.15 -52.49 -0.38 1.15 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.59 7.87 -51.93 -0.41 0.18 16 40 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.10 0.56 8.03 -51.93 -0.42 0.14 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -33.54 379.71 -9.46 -43.00 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.73 Total: -0.51 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.66 Total: 0.20 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.13 Total: -56.44 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.27 Total: 17.94 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.47 Total: -0.16 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.54 -9.46 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752030689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.480 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds