Wall clock time and date at job start Tue Mar 31 2020 13:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 119.99767 * 2 1 4 4 H 1.08004 * 120.00179 * 322.03549 * 3 2 1 5 5 C 1.38810 * 120.00012 * 142.04104 * 3 2 1 6 6 N 1.31617 * 120.00185 * 157.02152 * 5 3 2 7 7 Si 1.86803 * 119.99784 * 337.01410 * 5 3 2 8 8 H 1.48497 * 109.47056 * 95.68703 * 7 5 3 9 9 H 1.48504 * 109.46944 * 215.68088 * 7 5 3 10 10 H 1.48503 * 109.47276 * 335.68544 * 7 5 3 11 11 C 1.46500 * 120.00008 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46935 * 89.99928 * 11 2 1 13 13 C 1.52999 * 109.47051 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.34783 * 119.99799 * 179.97438 * 14 13 12 16 16 O 1.21675 * 120.00266 * 0.02562 * 15 14 13 17 17 C 1.46684 * 119.99654 * 180.02562 * 15 14 13 18 18 C 1.35668 * 126.13003 * 0.02562 * 17 15 14 19 19 N 1.30946 * 114.18460 * 179.72698 * 18 17 15 20 20 C 1.29420 * 117.36657 * 0.51854 * 19 18 17 21 21 C 1.50706 * 124.80300 * 179.76253 * 20 19 18 22 22 C 1.52996 * 109.46866 * 89.70191 * 21 20 19 23 23 C 1.52997 * 117.49890 * 243.62152 * 22 21 20 24 24 C 1.53000 * 60.00098 * 252.51039 * 23 22 21 25 25 S 1.70948 * 110.39283 * 359.50280 * 20 19 18 26 26 H 1.08999 * 109.47453 * 265.64996 * 1 2 3 27 27 H 1.09004 * 109.47603 * 25.65125 * 1 2 3 28 28 H 1.09000 * 109.47169 * 145.65321 * 1 2 3 29 29 H 0.97008 * 120.00239 * 180.02562 * 6 5 3 30 30 H 1.08994 * 109.47083 * 330.00239 * 11 2 1 31 31 H 1.09004 * 109.46933 * 210.00063 * 11 2 1 32 32 H 1.09003 * 109.46920 * 60.00002 * 12 11 2 33 33 H 1.08994 * 109.47292 * 299.99869 * 12 11 2 34 34 H 1.09003 * 109.46909 * 60.00421 * 13 12 11 35 35 H 1.08994 * 109.47708 * 300.00649 * 13 12 11 36 36 H 0.97002 * 120.00226 * 0.02562 * 14 13 12 37 37 H 1.07993 * 122.90660 * 0.02562 * 18 17 15 38 38 H 1.09000 * 109.47224 * 209.69989 * 21 20 19 39 39 H 1.08994 * 109.47087 * 329.70323 * 21 20 19 40 40 H 1.09006 * 115.55283 * 29.32627 * 22 21 20 41 41 H 1.09006 * 117.50060 * 0.02562 * 23 22 21 42 42 H 1.09004 * 117.50084 * 145.02385 * 23 22 21 43 43 H 1.09005 * 117.50037 * 252.50779 * 24 23 22 44 44 H 1.08995 * 117.51666 * 107.47976 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3175 1.3131 0.7394 6 7 4.2043 2.2305 0.4164 7 14 3.6303 0.1824 2.1931 8 1 4.4680 -0.9637 1.7574 9 1 4.3368 0.9338 3.2616 10 1 2.3350 -0.3217 2.7159 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7110 -1.4417 13 6 3.2180 -3.0357 -1.4412 14 7 3.4616 -3.4595 -2.8222 15 6 4.1250 -4.6068 -3.0680 16 8 4.5211 -5.2907 -2.1429 17 6 4.3694 -5.0308 -4.4508 18 6 3.9857 -4.3677 -5.5705 19 7 4.3319 -4.9564 -6.6877 20 6 4.9730 -6.0769 -6.5959 21 6 5.4457 -6.8961 -7.7692 22 6 6.8547 -6.4516 -8.1668 23 6 7.0358 -5.8365 -9.5559 24 6 7.5611 -7.2444 -9.2684 25 16 5.2139 -6.4927 -4.9553 26 1 -0.3634 -0.0779 1.0247 27 1 -0.3634 0.9264 -0.4449 28 1 -0.3633 -0.8485 -0.5798 29 1 5.0206 2.3191 0.9329 30 1 1.6084 -2.0281 0.5147 31 1 3.1499 -1.1381 0.5144 32 1 3.0415 -0.9515 -1.9559 33 1 1.5001 -1.8416 -1.9555 34 1 2.6292 -3.7953 -0.9269 35 1 4.1703 -2.9048 -0.9275 36 1 3.1461 -2.9141 -3.5598 37 1 3.4460 -3.4328 -5.5427 38 1 5.4617 -7.9505 -7.4934 39 1 4.7680 -6.7508 -8.6104 40 1 7.4693 -6.0573 -7.3574 41 1 6.1510 -5.7480 -10.1864 42 1 7.7696 -5.0372 -9.6607 43 1 8.6404 -7.3715 -9.1839 44 1 7.0222 -8.0828 -9.7096 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752030689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:41 Heat of formation + Delta-G solvation = 28.529240 kcal Electronic energy + Delta-G solvation = -23676.236092 eV Core-core repulsion = 20141.998490 eV Total energy + Delta-G solvation = -3534.237602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33015 -40.32250 -38.36790 -38.19542 -36.24729 -33.93758 -33.28766 -32.12397 -29.88479 -28.11184 -26.91730 -25.68727 -23.67618 -23.20139 -22.84216 -22.50709 -21.75694 -20.70258 -19.27998 -18.75519 -18.37317 -17.41732 -16.92677 -16.76427 -16.48142 -16.06265 -15.82925 -15.62840 -15.34083 -15.10849 -14.90184 -14.69117 -14.47608 -14.38012 -14.03476 -13.61594 -13.39189 -13.00329 -12.74658 -12.70060 -12.62318 -12.55042 -12.38132 -12.32549 -12.17671 -11.76769 -11.62234 -11.39909 -11.30926 -10.90321 -10.68516 -10.64491 -10.62846 -10.27803 -9.96320 -8.77553 -8.22620 -5.59783 -0.88104 0.04289 0.58476 1.29194 1.30634 1.39641 1.50116 2.02353 2.08496 2.39810 2.84283 2.97255 3.02520 3.41038 3.61921 3.78006 3.84153 4.01649 4.03642 4.06342 4.15233 4.16643 4.36861 4.47575 4.50971 4.62525 4.69828 4.72815 4.74529 4.77300 4.84532 4.95124 5.01544 5.07537 5.14711 5.21053 5.23934 5.26439 5.29713 5.39883 5.93100 6.15497 6.31199 6.50206 6.96787 6.98810 7.62166 8.04267 8.96932 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021471 B = 0.002171 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.770078 B =12891.700145 C =13015.193429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.626 5.626 3 C -0.258 4.258 4 H 0.044 0.956 5 C -0.018 4.018 6 N -0.945 5.945 7 Si 0.937 3.063 8 H -0.275 1.275 9 H -0.309 1.309 10 H -0.260 1.260 11 C 0.133 3.867 12 C -0.128 4.128 13 C 0.129 3.871 14 N -0.702 5.702 15 C 0.592 3.408 16 O -0.580 6.580 17 C -0.325 4.325 18 C 0.107 3.893 19 N -0.495 5.495 20 C 0.062 3.938 21 C -0.015 4.015 22 C -0.164 4.164 23 C -0.182 4.182 24 C -0.160 4.160 25 S 0.232 5.768 26 H 0.013 0.987 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.415 0.585 37 H 0.202 0.798 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.649 -23.161 -19.960 30.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.350 5.350 3 C -0.388 4.388 4 H 0.061 0.939 5 C -0.215 4.215 6 N -0.589 5.589 7 Si 0.766 3.234 8 H -0.202 1.202 9 H -0.238 1.238 10 H -0.184 1.184 11 C 0.008 3.992 12 C -0.168 4.168 13 C 0.004 3.996 14 N -0.353 5.353 15 C 0.378 3.622 16 O -0.461 6.461 17 C -0.449 4.449 18 C -0.052 4.052 19 N -0.209 5.209 20 C -0.212 4.212 21 C -0.055 4.055 22 C -0.184 4.184 23 C -0.219 4.219 24 C -0.197 4.197 25 S 0.491 5.509 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.252 0.748 37 H 0.219 0.781 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.394 -24.226 -19.253 31.037 hybrid contribution -0.075 1.519 0.789 1.713 sum 2.319 -22.707 -18.464 29.358 Atomic orbital electron populations 1.21214 0.82107 1.00511 0.98429 1.44192 1.02417 1.01365 1.87058 1.18683 1.05807 0.91659 1.22686 0.93853 1.26058 0.97048 0.98361 1.00040 1.69995 1.09256 1.38845 1.40809 0.85953 0.78229 0.78411 0.80813 1.20197 1.23754 1.18395 1.21146 0.95664 0.87414 0.94995 1.22121 1.00603 0.94279 0.99842 1.21308 0.99786 0.96502 0.81959 1.45703 1.56845 1.22843 1.09929 1.16987 0.77596 0.81081 0.86532 1.90817 1.53390 1.55475 1.46460 1.25620 1.15990 1.05045 0.98272 1.22551 0.97390 1.00794 0.84451 1.66227 1.15038 1.08801 1.30878 1.27994 0.97840 0.95602 0.99790 1.20094 0.95160 0.97748 0.92532 1.22152 0.96057 1.06780 0.93412 1.23125 1.03851 0.97146 0.97754 1.23103 1.01005 0.95108 1.00529 1.84047 1.48610 1.18471 0.99747 0.96882 0.93995 0.91870 0.92860 0.91226 0.95217 0.92758 0.89607 0.90488 0.93307 0.74768 0.78140 0.86589 0.87414 0.88690 0.87986 0.89107 0.88006 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.45 10.70 127.77 1.37 5.81 16 2 N -0.63 -28.37 2.47 -726.94 -1.79 -30.17 16 3 C -0.26 -14.40 9.88 84.03 0.83 -13.57 16 4 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 5 C -0.02 -1.06 5.29 84.86 0.45 -0.61 16 6 N -0.95 -58.77 13.97 21.65 0.30 -58.47 16 7 Si 0.94 46.34 25.10 68.60 1.72 48.06 16 8 H -0.27 -13.05 6.68 99.48 0.66 -12.38 16 9 H -0.31 -15.55 7.11 99.48 0.71 -14.85 16 10 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 11 C 0.13 5.29 4.53 86.38 0.39 5.68 16 12 C -0.13 -4.17 5.65 30.59 0.17 -4.00 16 13 C 0.13 3.86 5.67 86.38 0.49 4.35 16 14 N -0.70 -18.15 5.54 -467.09 -2.59 -20.73 16 15 C 0.59 17.17 7.79 86.45 0.67 17.84 16 16 O -0.58 -21.16 16.96 -4.27 -0.07 -21.24 16 17 C -0.32 -7.65 6.48 23.88 0.15 -7.50 16 18 C 0.11 2.15 10.93 84.23 0.92 3.07 16 19 N -0.50 -10.06 10.51 -190.30 -2.00 -12.06 16 20 C 0.06 1.04 6.59 88.47 0.58 1.62 16 21 C -0.01 -0.15 6.07 29.85 0.18 0.03 16 22 C -0.16 -1.81 5.72 -10.80 -0.06 -1.87 16 23 C -0.18 -1.89 10.18 30.59 0.31 -1.58 16 24 C -0.16 -1.22 10.25 30.59 0.31 -0.91 16 25 S 0.23 4.49 23.01 -56.49 -1.30 3.19 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.04 1.54 8.00 -2.38 -0.02 1.52 16 28 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 30 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 31 H 0.03 1.34 3.38 -2.39 -0.01 1.33 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.42 8.30 7.18 -92.71 -0.67 7.64 16 37 H 0.20 2.95 7.15 -2.91 -0.02 2.93 16 38 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 0.99 7.87 -2.39 -0.02 0.97 16 40 H 0.09 1.27 8.07 -2.38 -0.02 1.25 16 41 H 0.10 0.97 8.03 -2.38 -0.02 0.95 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -73.49 379.71 1.35 -72.14 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.30 Total: 10.90 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.78 Total: 8.37 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -6.08 Total: -121.43 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.07 Total: -21.24 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.72 Total: 48.06 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.30 Total: 3.19 kcal Total: -73.49 1.35 -72.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752030689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.673 kcal (2) G-P(sol) polarization free energy of solvation -73.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds