Wall clock time and date at job start Tue Mar 31 2020 14:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35274 * 126.70598 * 2 1 4 4 C 1.41932 * 103.95774 * 179.87640 * 3 2 1 5 5 O 1.35704 * 126.88154 * 180.11401 * 4 3 2 6 6 C 1.42896 * 117.00419 * 180.30429 * 5 4 3 7 7 C 1.50700 * 109.47618 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99676 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00293 * 179.97438 * 7 6 5 10 10 C 1.46925 * 120.63005 * 0.02562 * 9 7 6 11 11 C 1.53201 * 108.77603 * 126.36700 * 10 9 7 12 12 C 1.53045 * 109.31192 * 54.63329 * 11 10 9 13 13 C 1.53040 * 109.53818 * 298.63762 * 12 11 10 14 14 H 1.09005 * 109.49298 * 301.41397 * 13 12 11 15 15 C 1.52994 * 109.49711 * 181.35086 * 13 12 11 16 16 N 1.46500 * 109.47329 * 174.99697 * 15 13 12 17 17 C 1.36938 * 120.00357 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99390 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00314 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00001 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47220 * 89.99979 * 21 19 17 23 23 H 1.48500 * 109.46887 * 210.00436 * 21 19 17 24 24 H 1.48505 * 109.46756 * 330.00109 * 21 19 17 25 25 C 1.46932 * 120.63307 * 179.72265 * 9 7 6 26 26 N 1.30619 * 106.24301 * 0.39388 * 4 3 2 27 27 O 1.20920 * 111.49308 * 359.74633 * 26 4 3 28 28 H 1.09002 * 109.47152 * 179.70870 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.70970 * 1 2 3 30 30 H 1.09004 * 109.47113 * 299.70951 * 1 2 3 31 31 H 1.07994 * 128.02214 * 359.97381 * 3 2 1 32 32 H 1.09006 * 109.47508 * 300.00542 * 6 5 4 33 33 H 1.09005 * 109.47048 * 60.00098 * 6 5 4 34 34 H 1.08997 * 109.59022 * 246.15088 * 10 9 7 35 35 H 1.08994 * 109.58711 * 6.43884 * 10 9 7 36 36 H 1.08996 * 109.49756 * 174.58615 * 11 10 9 37 37 H 1.09000 * 109.49382 * 294.68433 * 11 10 9 38 38 H 1.09003 * 109.45513 * 58.65677 * 12 11 10 39 39 H 1.08998 * 109.45756 * 178.62763 * 12 11 10 40 40 H 1.09007 * 109.47258 * 294.99748 * 15 13 12 41 41 H 1.08998 * 109.47212 * 54.99431 * 15 13 12 42 42 H 0.97001 * 119.99818 * 0.02562 * 16 15 13 43 43 H 0.96996 * 119.99964 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58183 * 353.42086 * 25 9 7 45 45 H 1.09001 * 109.58690 * 113.84402 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 0.0030 5 8 4.7953 1.2218 0.0063 6 6 5.9988 0.4514 0.0021 7 6 7.1880 1.3771 0.0073 8 8 7.0212 2.5784 0.0143 9 7 8.4367 0.8701 0.0051 10 6 8.6546 -0.5829 -0.0029 11 6 9.5789 -0.9364 -1.1724 12 6 10.8623 -0.1088 -1.0713 13 6 10.5195 1.3801 -1.1596 14 1 10.0077 1.5803 -2.1009 15 6 11.8061 2.2052 -1.0923 16 7 11.4896 3.6209 -1.2964 17 6 12.4899 4.5559 -1.2775 18 1 13.5124 4.2494 -1.1125 19 6 12.1900 5.8973 -1.4703 20 7 10.9439 6.2708 -1.6708 21 14 13.5547 7.1726 -1.4453 22 1 14.0907 7.3512 -2.8186 23 1 13.0151 8.4654 -0.9524 24 1 14.6433 6.7150 -0.5447 25 6 9.6060 1.7598 0.0039 26 7 3.4765 -0.7621 -0.0042 27 8 2.3085 -1.0748 -0.0060 28 1 -0.3633 -1.0277 -0.0052 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3633 0.5093 0.8926 31 1 2.0311 2.1263 -0.0004 32 1 6.0280 -0.1819 0.8888 33 1 6.0276 -0.1727 -0.8912 34 1 9.1190 -0.8879 0.9348 35 1 7.6998 -1.0950 -0.1214 36 1 9.8261 -1.9973 -1.1330 37 1 9.0760 -0.7143 -2.1136 38 1 11.3519 -0.3130 -0.1191 39 1 11.5321 -0.3762 -1.8887 40 1 12.2712 2.0740 -0.1152 41 1 12.4933 1.8708 -1.8695 42 1 10.5713 3.8962 -1.4441 43 1 10.7342 7.2083 -1.8052 44 1 9.2787 2.7930 -0.1126 45 1 10.1495 1.6501 0.9423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752800568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:45 Heat of formation + Delta-G solvation = 5.833861 kcal Electronic energy + Delta-G solvation = -27051.428853 eV Core-core repulsion = 23073.454235 eV Total energy + Delta-G solvation = -3977.974618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.16724 -40.41813 -38.94675 -37.42768 -34.97118 -34.15722 -33.01936 -32.77904 -31.73982 -30.07613 -28.89778 -28.08987 -25.54085 -25.06260 -23.68916 -23.16710 -21.78288 -21.38814 -20.17240 -19.09328 -18.26013 -18.12777 -17.19566 -17.09503 -16.70662 -16.36945 -15.86029 -14.94541 -14.75781 -14.56839 -14.44253 -14.23062 -13.98267 -13.75796 -13.68767 -13.53114 -13.16721 -12.96684 -12.94855 -12.82620 -12.55655 -12.34891 -11.91635 -11.57743 -11.38476 -11.13282 -11.02357 -10.83788 -10.67361 -10.41046 -10.31335 -9.98661 -9.81633 -9.73008 -9.58087 -9.47054 -8.84109 -8.59383 -6.87305 -5.69412 -2.99611 1.10553 1.99864 2.11620 2.54588 2.78328 3.20238 3.47525 3.51874 3.54480 3.89792 4.24015 4.45151 4.58302 4.62679 4.67912 4.74732 4.78322 4.85010 4.87199 4.93930 4.94519 5.17310 5.20132 5.28767 5.34452 5.35849 5.58843 5.61330 5.63386 5.76365 5.80720 5.91475 6.06802 6.10139 6.19275 6.37111 6.51516 6.53368 6.74373 6.77371 6.87175 7.34964 7.74594 7.94820 8.14043 8.48136 9.59005 10.16678 10.50753 11.52860 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.002452 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.327313 B =11416.173562 C =12868.560980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.232 4.232 4 C 0.216 3.784 5 O -0.254 6.254 6 C 0.049 3.951 7 C 0.513 3.487 8 O -0.505 6.505 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.112 4.112 13 C -0.108 4.108 14 H 0.074 0.926 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.929 5.929 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.122 3.878 26 N -0.414 5.414 27 O 0.097 5.903 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.105 0.895 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 -20.683 4.197 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.254 4.254 4 C 0.018 3.982 5 O -0.159 6.159 6 C -0.030 4.030 7 C 0.298 3.702 8 O -0.379 6.379 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.128 4.128 14 H 0.093 0.907 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.001 3.999 26 N -0.142 5.142 27 O 0.037 5.963 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.197 0.803 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.123 0.877 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.753 -20.635 4.227 27.547 hybrid contribution 0.364 1.377 -0.102 1.428 sum -17.388 -19.258 4.125 26.272 Atomic orbital electron populations 1.20389 0.83464 1.04898 1.04477 1.24342 0.96475 0.85558 1.00968 1.21827 0.88293 1.01858 1.13395 1.22082 0.88529 0.88001 0.99613 1.86318 1.09982 1.30741 1.88873 1.22546 0.82486 0.93669 1.04294 1.19837 0.83575 0.88904 0.77864 1.90833 1.84825 1.14871 1.47344 1.48067 1.05382 1.07300 1.73473 1.21820 1.00321 0.80244 0.99633 1.21918 0.96775 1.00112 0.98411 1.21527 0.96597 0.94475 1.02461 1.21623 0.97564 0.94669 0.98928 0.90738 1.20628 0.92708 0.85518 0.97852 1.42422 1.08095 1.00271 1.87033 1.19198 0.89096 0.87467 1.41612 0.91208 1.24771 0.96267 0.97164 1.02767 1.69677 1.16538 1.15913 1.55627 0.86198 0.81055 0.81428 0.77533 1.21772 1.21772 1.20793 1.21689 0.84270 0.95605 0.98338 1.74144 0.97952 1.14208 1.27936 1.84781 1.10306 1.32013 1.69204 0.89628 0.88819 0.88842 0.80288 0.88808 0.88730 0.90819 0.90372 0.90639 0.91420 0.91628 0.91342 0.96202 0.95978 0.78087 0.93454 0.87663 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 36.01 0.38 0.15 16 2 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.28 11.11 -39.22 -0.44 -2.72 16 4 C 0.22 2.77 8.01 -16.65 -0.13 2.64 16 5 O -0.25 -3.83 9.74 -38.73 -0.38 -4.21 16 6 C 0.05 0.62 4.49 36.01 0.16 0.78 16 7 C 0.51 8.33 7.77 -10.99 -0.09 8.25 16 8 O -0.51 -10.86 15.91 -14.35 -0.23 -11.09 16 9 N -0.61 -8.64 2.98 -173.05 -0.52 -9.16 16 10 C 0.10 1.00 6.35 -3.71 -0.02 0.98 16 11 C -0.13 -1.29 6.08 -26.60 -0.16 -1.45 16 12 C -0.11 -1.34 5.17 -26.69 -0.14 -1.48 16 13 C -0.11 -1.77 2.36 -90.74 -0.21 -1.98 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.16 3.25 5.66 -4.04 -0.02 3.23 16 16 N -0.73 -19.16 5.38 -59.91 -0.32 -19.48 16 17 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.38 13.06 55.49 0.72 -28.65 16 21 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.12 2.07 5.49 -3.95 -0.02 2.05 16 26 N -0.41 -5.03 11.54 30.38 0.35 -4.67 16 27 O 0.10 0.98 11.19 17.09 0.19 1.17 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.09 0.99 7.94 -51.93 -0.41 0.58 16 33 H 0.09 1.04 7.70 -51.93 -0.40 0.64 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.38 10.80 6.89 -40.82 -0.28 10.51 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.11 2.26 6.20 -51.93 -0.32 1.93 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -36.84 373.11 -7.55 -44.40 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.76 Total: 5.55 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.21 Total: 2.48 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.24 Total: -61.96 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.41 Total: -14.13 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.84 -7.55 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752800568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.231 kcal (2) G-P(sol) polarization free energy of solvation -36.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds