Wall clock time and date at job start Tue Mar 31 2020 14:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35274 * 126.70598 * 2 1 4 4 C 1.41932 * 103.95774 * 179.87640 * 3 2 1 5 5 O 1.35704 * 126.88154 * 180.11401 * 4 3 2 6 6 C 1.42896 * 117.00419 * 180.30429 * 5 4 3 7 7 C 1.50700 * 109.47618 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99676 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00293 * 179.97438 * 7 6 5 10 10 C 1.46925 * 120.63005 * 0.02562 * 9 7 6 11 11 C 1.53201 * 108.77603 * 126.36700 * 10 9 7 12 12 C 1.53045 * 109.31192 * 54.63329 * 11 10 9 13 13 C 1.53040 * 109.53818 * 298.63762 * 12 11 10 14 14 H 1.09005 * 109.49298 * 301.41397 * 13 12 11 15 15 C 1.52994 * 109.49711 * 181.35086 * 13 12 11 16 16 N 1.46500 * 109.47329 * 174.99697 * 15 13 12 17 17 C 1.36938 * 120.00357 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99390 * 0.02562 * 17 16 15 19 19 C 1.38802 * 120.00314 * 180.02562 * 17 16 15 20 20 N 1.31623 * 120.00001 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00284 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47220 * 89.99979 * 21 19 17 23 23 H 1.48500 * 109.46887 * 210.00436 * 21 19 17 24 24 H 1.48505 * 109.46756 * 330.00109 * 21 19 17 25 25 C 1.46932 * 120.63307 * 179.72265 * 9 7 6 26 26 N 1.30619 * 106.24301 * 0.39388 * 4 3 2 27 27 O 1.20920 * 111.49308 * 359.74633 * 26 4 3 28 28 H 1.09002 * 109.47152 * 179.70870 * 1 2 3 29 29 H 1.09001 * 109.46980 * 59.70970 * 1 2 3 30 30 H 1.09004 * 109.47113 * 299.70951 * 1 2 3 31 31 H 1.07994 * 128.02214 * 359.97381 * 3 2 1 32 32 H 1.09006 * 109.47508 * 300.00542 * 6 5 4 33 33 H 1.09005 * 109.47048 * 60.00098 * 6 5 4 34 34 H 1.08997 * 109.59022 * 246.15088 * 10 9 7 35 35 H 1.08994 * 109.58711 * 6.43884 * 10 9 7 36 36 H 1.08996 * 109.49756 * 174.58615 * 11 10 9 37 37 H 1.09000 * 109.49382 * 294.68433 * 11 10 9 38 38 H 1.09003 * 109.45513 * 58.65677 * 12 11 10 39 39 H 1.08998 * 109.45756 * 178.62763 * 12 11 10 40 40 H 1.09007 * 109.47258 * 294.99748 * 15 13 12 41 41 H 1.08998 * 109.47212 * 54.99431 * 15 13 12 42 42 H 0.97001 * 119.99818 * 0.02562 * 16 15 13 43 43 H 0.96996 * 119.99964 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.58183 * 353.42086 * 25 9 7 45 45 H 1.09001 * 109.58690 * 113.84402 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 0.0030 5 8 4.7953 1.2218 0.0063 6 6 5.9988 0.4514 0.0021 7 6 7.1880 1.3771 0.0073 8 8 7.0212 2.5784 0.0143 9 7 8.4367 0.8701 0.0051 10 6 8.6546 -0.5829 -0.0029 11 6 9.5789 -0.9364 -1.1724 12 6 10.8623 -0.1088 -1.0713 13 6 10.5195 1.3801 -1.1596 14 1 10.0077 1.5803 -2.1009 15 6 11.8061 2.2052 -1.0923 16 7 11.4896 3.6209 -1.2964 17 6 12.4899 4.5559 -1.2775 18 1 13.5124 4.2494 -1.1125 19 6 12.1900 5.8973 -1.4703 20 7 10.9439 6.2708 -1.6708 21 14 13.5547 7.1726 -1.4453 22 1 14.0907 7.3512 -2.8186 23 1 13.0151 8.4654 -0.9524 24 1 14.6433 6.7150 -0.5447 25 6 9.6060 1.7598 0.0039 26 7 3.4765 -0.7621 -0.0042 27 8 2.3085 -1.0748 -0.0060 28 1 -0.3633 -1.0277 -0.0052 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3633 0.5093 0.8926 31 1 2.0311 2.1263 -0.0004 32 1 6.0280 -0.1819 0.8888 33 1 6.0276 -0.1727 -0.8912 34 1 9.1190 -0.8879 0.9348 35 1 7.6998 -1.0950 -0.1214 36 1 9.8261 -1.9973 -1.1330 37 1 9.0760 -0.7143 -2.1136 38 1 11.3519 -0.3130 -0.1191 39 1 11.5321 -0.3762 -1.8887 40 1 12.2712 2.0740 -0.1152 41 1 12.4933 1.8708 -1.8695 42 1 10.5713 3.8962 -1.4441 43 1 10.7342 7.2083 -1.8052 44 1 9.2787 2.7930 -0.1126 45 1 10.1495 1.6501 0.9423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752800568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:45 Heat of formation + Delta-G solvation = -21.116489 kcal Electronic energy + Delta-G solvation = -27052.597508 eV Core-core repulsion = 23073.454235 eV Total energy + Delta-G solvation = -3979.143273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.96691 -41.61452 -40.00313 -38.73891 -36.68471 -34.81819 -34.58572 -33.58392 -33.15199 -31.73087 -30.06828 -28.63659 -27.17231 -26.23950 -24.91098 -24.50209 -22.79505 -22.58472 -21.47117 -20.20968 -19.26502 -19.02324 -18.95258 -18.08349 -17.85418 -17.41397 -17.05132 -16.72515 -16.10664 -15.79191 -15.43963 -15.39849 -15.26875 -14.92909 -14.72277 -14.33249 -14.16839 -14.11576 -13.99562 -13.91397 -13.75832 -13.23981 -13.06514 -12.93920 -12.90603 -12.70616 -12.21310 -12.16583 -12.08931 -11.96580 -11.89806 -11.62341 -11.36289 -11.01323 -10.97038 -10.53545 -10.29601 -9.80598 -9.03924 -7.96695 -5.27675 0.41955 1.11032 1.15674 1.30175 1.43411 1.46840 1.55343 2.05024 2.28844 2.53616 3.05440 3.20794 3.36179 3.65529 3.75811 3.79729 3.85376 3.86810 3.88726 3.97489 4.03669 4.15926 4.25511 4.36709 4.39910 4.55830 4.72719 4.74546 4.76490 4.79413 4.83765 4.87672 4.89902 5.01297 5.07556 5.19397 5.27028 5.31067 5.37537 5.44534 5.48628 5.79782 6.19364 6.23798 6.90590 7.18501 7.28935 8.05472 8.27209 9.26924 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.002452 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.327313 B =11416.173562 C =12868.560980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.014 3.986 3 C -0.256 4.256 4 C 0.189 3.811 5 O -0.286 6.286 6 C 0.059 3.941 7 C 0.505 3.495 8 O -0.574 6.574 9 N -0.600 5.600 10 C 0.094 3.906 11 C -0.128 4.128 12 C -0.106 4.106 13 C -0.096 4.096 14 H 0.050 0.950 15 C 0.158 3.842 16 N -0.750 5.750 17 C -0.245 4.245 18 H 0.081 0.919 19 C -0.083 4.083 20 N -0.974 5.974 21 Si 0.979 3.021 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.265 1.265 25 C 0.128 3.872 26 N -0.426 5.426 27 O 0.095 5.905 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.191 0.809 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.369 0.631 43 H 0.250 0.750 44 H 0.049 0.951 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.001 -23.970 4.687 30.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.278 4.278 4 C -0.008 4.008 5 O -0.192 6.192 6 C -0.019 4.019 7 C 0.293 3.707 8 O -0.453 6.453 9 N -0.333 5.333 10 C -0.027 4.027 11 C -0.166 4.166 12 C -0.144 4.144 13 C -0.115 4.115 14 H 0.069 0.931 15 C 0.031 3.969 16 N -0.392 5.392 17 C -0.377 4.377 18 H 0.099 0.901 19 C -0.275 4.275 20 N -0.625 5.625 21 Si 0.807 3.193 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.006 3.994 26 N -0.154 5.154 27 O 0.035 5.965 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.208 0.792 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.201 0.799 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.980 -24.035 4.723 30.386 hybrid contribution 0.391 2.287 -0.240 2.332 sum -17.589 -21.749 4.483 28.328 Atomic orbital electron populations 1.20691 0.79769 1.06574 1.06086 1.25105 0.98025 0.83955 0.97864 1.22160 0.87587 1.03208 1.14850 1.22448 0.88528 0.88747 1.01104 1.86260 1.11153 1.32346 1.89471 1.22541 0.80492 0.92438 1.06393 1.20583 0.85014 0.88581 0.76569 1.90798 1.85899 1.17914 1.50682 1.48150 1.03975 1.09163 1.72033 1.22269 1.02333 0.76958 1.01093 1.21925 0.95068 1.01823 0.97749 1.21521 0.98353 0.90751 1.03784 1.21480 0.95183 0.97585 0.97276 0.93144 1.20857 0.94920 0.83013 0.98105 1.42702 1.06926 1.02594 1.87010 1.19692 0.90042 0.88238 1.39740 0.90084 1.25710 0.98662 0.99569 1.03514 1.69879 1.18985 1.15816 1.57795 0.85058 0.78313 0.78087 0.77802 1.21196 1.22429 1.18931 1.21364 0.85401 0.93614 0.99034 1.74112 0.99059 1.13834 1.28418 1.84738 1.10053 1.32776 1.68908 0.87930 0.87104 0.87013 0.79217 0.86175 0.86623 0.88390 0.87600 0.86637 0.92310 0.89965 0.90409 0.95286 0.95281 0.79898 0.94125 0.93189 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.53 16 2 C 0.01 0.19 7.48 25.00 0.19 0.38 16 3 C -0.26 -4.95 11.11 22.50 0.25 -4.70 16 4 C 0.19 4.87 8.01 85.79 0.69 5.56 16 5 O -0.29 -8.94 9.74 -71.21 -0.69 -9.63 16 6 C 0.06 1.50 4.49 71.24 0.32 1.82 16 7 C 0.50 17.09 7.77 87.66 0.68 17.77 16 8 O -0.57 -26.86 15.91 16.00 0.25 -26.61 16 9 N -0.60 -17.05 2.98 -819.80 -2.44 -19.49 16 10 C 0.09 1.54 6.35 86.37 0.55 2.09 16 11 C -0.13 -1.99 6.08 30.68 0.19 -1.80 16 12 C -0.11 -2.25 5.17 30.62 0.16 -2.09 16 13 C -0.10 -3.14 2.36 -10.87 -0.03 -3.17 16 14 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 15 C 0.16 6.41 5.66 86.38 0.49 6.89 16 16 N -0.75 -40.67 5.38 -343.46 -1.85 -42.51 16 17 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 18 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 19 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 20 N -0.97 -64.31 13.06 21.65 0.28 -64.03 16 21 Si 0.98 48.36 29.55 68.60 2.03 50.39 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 24 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 25 C 0.13 4.54 5.49 86.21 0.47 5.01 16 26 N -0.43 -9.96 11.54 -172.60 -1.99 -11.96 16 27 O 0.10 1.78 11.19 71.32 0.80 2.58 16 28 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.11 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.12 2.35 7.94 -2.38 -0.02 2.33 16 33 H 0.12 2.38 7.70 -2.38 -0.02 2.36 16 34 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.21 5.93 -2.39 -0.01 1.20 16 36 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.37 22.13 6.89 -92.71 -0.64 21.49 16 43 H 0.25 15.99 8.31 -92.71 -0.77 15.22 16 44 H 0.05 2.35 6.20 -2.39 -0.01 2.33 16 45 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -87.13 373.11 2.76 -84.37 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.37 Total: 26.72 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.00 Total: 10.17 kcal Atomic # 7 Polarization: -132.00 SS G_CDS: -6.00 Total: -137.99 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: 0.36 Total: -33.66 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -87.13 2.76 -84.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752800568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.250 kcal (2) G-P(sol) polarization free energy of solvation -87.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds