Wall clock time and date at job start Tue Mar 31 2020 14:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35276 * 126.70581 * 2 1 4 4 C 1.41929 * 103.95777 * 180.10841 * 3 2 1 5 5 O 1.35706 * 126.88010 * 179.91159 * 4 3 2 6 6 C 1.42904 * 116.99951 * 179.70749 * 5 4 3 7 7 C 1.50700 * 109.46953 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00040 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00114 * 180.02562 * 7 6 5 10 10 C 1.46924 * 120.62565 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.77399 * 233.58451 * 10 9 7 12 12 C 1.53044 * 109.31292 * 305.36923 * 11 10 9 13 13 C 1.53040 * 109.53629 * 61.36013 * 12 11 10 14 14 H 1.09000 * 109.52610 * 58.60811 * 13 12 11 15 15 C 1.53005 * 109.49252 * 178.68072 * 13 12 11 16 16 N 1.46505 * 109.46904 * 184.83936 * 15 13 12 17 17 C 1.36931 * 119.99788 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.46926 * 120.63185 * 179.97438 * 9 7 6 26 26 N 1.30621 * 106.24423 * 359.64393 * 4 3 2 27 27 O 1.20920 * 111.49564 * 0.23020 * 26 4 3 28 28 H 1.08997 * 109.47380 * 180.26010 * 1 2 3 29 29 H 1.08997 * 109.47170 * 300.26471 * 1 2 3 30 30 H 1.09002 * 109.46976 * 60.25778 * 1 2 3 31 31 H 1.08004 * 128.02251 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47237 * 59.99735 * 6 5 4 33 33 H 1.08997 * 109.47450 * 299.99755 * 6 5 4 34 34 H 1.09004 * 109.59239 * 353.37153 * 10 9 7 35 35 H 1.09002 * 109.59102 * 113.80416 * 10 9 7 36 36 H 1.09006 * 109.49707 * 65.31720 * 11 10 9 37 37 H 1.08998 * 109.49965 * 185.37867 * 11 10 9 38 38 H 1.08997 * 109.46044 * 301.33925 * 12 11 10 39 39 H 1.09002 * 109.45789 * 181.37950 * 12 11 10 40 40 H 1.09003 * 109.46946 * 64.84695 * 15 13 12 41 41 H 1.08993 * 109.47679 * 304.84238 * 15 13 12 42 42 H 0.97000 * 119.99792 * 0.02562 * 16 15 13 43 43 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.58221 * 6.62951 * 25 9 7 45 45 H 1.08993 * 109.58966 * 246.19944 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 -0.0026 5 8 4.7953 1.2219 -0.0053 6 6 5.9988 0.4514 -0.0011 7 6 7.1879 1.3771 -0.0055 8 8 7.0212 2.5784 -0.0121 9 7 8.4368 0.8701 -0.0032 10 6 8.6547 -0.5829 0.0031 11 6 9.5792 -0.9377 1.1720 12 6 10.8625 -0.1100 1.0716 13 6 10.5197 1.3788 1.1615 14 1 10.0083 1.5786 2.1032 15 6 11.8063 2.2040 1.0941 16 7 11.4894 3.6201 1.2959 17 6 12.4896 4.5550 1.2765 18 1 13.5121 4.2487 1.1121 19 6 12.1886 5.8974 1.4621 20 7 10.9424 6.2708 1.6620 21 14 13.5521 7.1738 1.4279 22 1 14.2312 7.1374 0.1078 23 1 12.9729 8.5228 1.6503 24 1 14.5363 6.8754 2.4992 25 6 9.6060 1.7599 -0.0080 26 7 3.4765 -0.7621 0.0039 27 8 2.3085 -1.0749 0.0054 28 1 -0.3634 -1.0276 0.0047 29 1 -0.3633 0.5179 0.8876 30 1 -0.3633 0.5098 -0.8923 31 1 2.0311 2.1264 -0.0004 32 1 6.0282 -0.1815 -0.8881 33 1 6.0274 -0.1731 0.8918 34 1 7.7001 -1.0951 0.1237 35 1 9.1189 -0.8869 -0.9351 36 1 9.0764 -0.7166 2.1136 37 1 9.8258 -1.9987 1.1317 38 1 11.3520 -0.3130 0.1191 39 1 11.5325 -0.3784 1.8884 40 1 12.2721 2.0716 0.1175 41 1 12.4929 1.8709 1.8723 42 1 10.5710 3.8952 1.4433 43 1 10.7321 7.2088 1.7920 44 1 9.2789 2.7934 0.1053 45 1 10.1475 1.6466 -0.9471 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752800569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:49 Heat of formation + Delta-G solvation = 5.910184 kcal Electronic energy + Delta-G solvation = -27051.054490 eV Core-core repulsion = 23073.083181 eV Total energy + Delta-G solvation = -3977.971309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.16577 -40.41112 -38.93942 -37.41742 -34.96403 -34.15677 -33.01464 -32.77791 -31.73124 -30.06873 -28.89553 -28.08969 -25.53693 -25.05330 -23.68819 -23.16282 -21.77896 -21.38471 -20.16818 -19.09514 -18.25900 -18.12696 -17.19351 -17.09198 -16.70449 -16.36856 -15.85724 -14.94316 -14.75254 -14.56264 -14.44428 -14.22989 -13.98056 -13.75521 -13.68712 -13.52965 -13.16569 -12.96361 -12.94792 -12.82587 -12.55217 -12.34745 -11.91605 -11.57168 -11.38335 -11.13205 -11.02086 -10.82275 -10.66779 -10.41805 -10.31692 -10.00695 -9.81605 -9.72834 -9.57626 -9.47000 -8.83441 -8.58970 -6.87153 -5.69029 -2.99184 1.10558 1.99906 2.11769 2.54676 2.78362 3.20386 3.48134 3.51909 3.53858 3.89812 4.24089 4.45188 4.58468 4.62813 4.68077 4.74819 4.78415 4.85230 4.87258 4.94224 4.94534 5.17039 5.20166 5.28676 5.34461 5.35956 5.58843 5.61039 5.63601 5.76453 5.81013 5.91630 6.06954 6.10479 6.19480 6.37200 6.51675 6.53245 6.74316 6.77571 6.87498 7.35063 7.74377 7.94838 8.14149 8.48484 9.59299 10.17043 10.51197 11.53165 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017004 B = 0.002453 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.273330 B =11411.476391 C =12865.017951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.232 4.232 4 C 0.216 3.784 5 O -0.254 6.254 6 C 0.049 3.951 7 C 0.513 3.487 8 O -0.505 6.505 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.112 4.112 13 C -0.108 4.108 14 H 0.074 0.926 15 C 0.161 3.839 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.122 3.878 26 N -0.414 5.414 27 O 0.097 5.903 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.020 0.980 41 H 0.022 0.978 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.105 0.895 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.741 -20.653 -4.163 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.254 4.254 4 C 0.018 3.982 5 O -0.159 6.159 6 C -0.030 4.030 7 C 0.298 3.702 8 O -0.379 6.379 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.127 4.127 14 H 0.093 0.907 15 C 0.033 3.967 16 N -0.378 5.378 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.001 3.999 26 N -0.142 5.142 27 O 0.037 5.963 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.197 0.803 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.123 0.877 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.773 -20.599 -4.181 27.526 hybrid contribution 0.374 1.372 0.076 1.424 sum -17.399 -19.227 -4.105 26.253 Atomic orbital electron populations 1.20387 0.83465 1.04898 1.04478 1.24345 0.96475 0.85557 1.00970 1.21829 0.88294 1.01857 1.13391 1.22082 0.88530 0.88000 0.99612 1.86321 1.09983 1.30736 1.88874 1.22546 0.82486 0.93670 1.04293 1.19843 0.83580 0.88904 0.77863 1.90833 1.84826 1.14869 1.47345 1.48073 1.05389 1.07307 1.73477 1.21823 1.00317 0.80242 0.99629 1.21919 0.96780 1.00096 0.98422 1.21526 0.96593 0.94487 1.02454 1.21713 0.97549 0.94628 0.98852 0.90708 1.20632 0.92732 0.85530 0.97842 1.42411 1.08076 1.00236 1.87078 1.19155 0.89069 0.87422 1.41819 0.91264 1.24772 0.96261 0.97143 1.02760 1.69666 1.16561 1.15959 1.55577 0.86271 0.81079 0.81090 0.77739 1.21290 1.21702 1.21326 1.21796 0.84224 0.95608 0.98267 1.74144 0.97955 1.14207 1.27937 1.84783 1.10306 1.32009 1.69207 0.89627 0.88820 0.88843 0.80286 0.88808 0.88731 0.90370 0.90812 0.91424 0.90647 0.91634 0.91351 0.96215 0.95996 0.78084 0.93402 0.87655 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.45 36.01 0.38 0.15 16 2 C -0.01 -0.08 7.48 -35.36 -0.26 -0.34 16 3 C -0.23 -2.28 11.11 -39.23 -0.44 -2.72 16 4 C 0.22 2.77 8.01 -16.65 -0.13 2.64 16 5 O -0.25 -3.83 9.74 -38.73 -0.38 -4.21 16 6 C 0.05 0.62 4.49 36.01 0.16 0.78 16 7 C 0.51 8.33 7.78 -10.98 -0.09 8.25 16 8 O -0.51 -10.86 15.91 -14.36 -0.23 -11.09 16 9 N -0.61 -8.64 2.97 -172.74 -0.51 -9.16 16 10 C 0.10 1.01 6.34 -3.71 -0.02 0.98 16 11 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 12 C -0.11 -1.34 5.17 -26.69 -0.14 -1.48 16 13 C -0.11 -1.76 2.38 -90.48 -0.22 -1.97 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.16 3.25 5.65 -4.04 -0.02 3.22 16 16 N -0.73 -19.16 5.38 -59.90 -0.32 -19.48 16 17 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -29.38 13.06 55.49 0.72 -28.65 16 21 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.12 2.07 5.52 -3.69 -0.02 2.05 16 26 N -0.41 -5.03 11.54 30.38 0.35 -4.68 16 27 O 0.10 0.98 11.19 17.07 0.19 1.17 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.09 0.99 7.94 -51.93 -0.41 0.58 16 33 H 0.09 1.04 7.69 -51.93 -0.40 0.64 16 34 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.38 10.80 6.89 -40.82 -0.28 10.52 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.11 2.26 6.21 -51.93 -0.32 1.94 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -36.82 373.16 -7.55 -44.37 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.77 Total: 5.60 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.21 Total: 2.47 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.24 Total: -61.97 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.41 Total: -14.13 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.82 -7.55 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752800569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.284 kcal (2) G-P(sol) polarization free energy of solvation -36.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds