Wall clock time and date at job start Tue Mar 31 2020 13:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.46771 * 2 1 4 4 C 1.46893 * 111.00025 * 297.39201 * 3 2 1 5 5 C 1.52998 * 109.47288 * 288.30214 * 4 3 2 6 6 N 1.46503 * 109.47178 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00246 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99944 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00318 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.47340 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00107 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00020 * 0.02562 * 11 10 9 13 13 C 1.38791 * 119.99854 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47212 * 90.00268 * 15 13 11 17 17 H 1.48498 * 109.47271 * 210.00396 * 15 13 11 18 18 H 1.48500 * 109.47448 * 330.00459 * 15 13 11 19 19 C 1.46898 * 111.00163 * 61.35241 * 3 2 1 20 20 C 1.50698 * 109.47700 * 66.04444 * 19 3 2 21 21 C 1.38220 * 119.61722 * 95.01836 * 20 19 3 22 22 C 1.38637 * 119.16128 * 179.97438 * 21 20 19 23 23 C 1.38667 * 118.41766 * 0.02562 * 22 21 20 24 24 C 1.38180 * 119.16611 * 359.97438 * 23 22 21 25 25 N 1.31855 * 119.61888 * 275.00323 * 20 19 3 26 26 H 1.09007 * 109.46739 * 61.78905 * 1 2 3 27 27 H 1.08999 * 109.47307 * 181.77993 * 1 2 3 28 28 H 1.08992 * 109.48004 * 301.78699 * 1 2 3 29 29 H 1.08992 * 109.47570 * 239.99451 * 2 1 3 30 30 H 1.09008 * 109.46824 * 119.99077 * 2 1 3 31 31 H 1.08998 * 109.47097 * 48.30118 * 4 3 2 32 32 H 1.09005 * 109.47261 * 168.30015 * 4 3 2 33 33 H 1.09004 * 109.47346 * 299.98039 * 5 4 3 34 34 H 1.08995 * 109.47545 * 59.98540 * 5 4 3 35 35 H 0.97005 * 120.00190 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.47371 * 300.00571 * 9 7 6 37 37 H 1.09003 * 109.47043 * 60.00587 * 9 7 6 38 38 H 0.96996 * 120.00218 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47346 * 306.04109 * 19 3 2 40 40 H 1.09005 * 109.47146 * 186.04614 * 19 3 2 41 41 H 1.08000 * 120.42291 * 359.96165 * 21 20 19 42 42 H 1.07998 * 120.79272 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.42111 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.62091 * 180.27666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6001 2.0916 -1.2176 5 6 2.3896 1.5579 -2.4146 6 7 1.9708 2.2622 -3.6290 7 6 2.5353 1.9563 -4.8141 8 8 3.3896 1.0976 -4.8751 9 6 2.1041 2.6804 -6.0634 10 16 3.0393 2.0501 -7.4792 11 6 2.3543 3.0421 -8.7643 12 1 1.5900 3.7699 -8.5355 13 6 2.7979 2.8888 -10.0705 14 7 3.7299 2.0021 -10.3493 15 14 2.0723 3.9409 -11.4328 16 1 2.8672 5.1876 -11.5722 17 1 2.1058 3.1869 -12.7117 18 1 0.6671 4.2848 -11.0976 19 6 1.5751 2.1005 1.2035 20 6 2.2244 1.4908 2.4191 21 6 3.3887 2.0418 2.9204 22 6 3.9778 1.4736 4.0394 23 6 3.3712 0.3672 4.6145 24 6 2.2078 -0.1285 4.0575 25 7 1.6752 0.4380 2.9923 26 1 -0.3633 0.4858 -0.9057 27 1 -0.3634 -1.0271 0.0319 28 1 -0.3635 0.5413 0.8734 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5137 0.8901 31 1 0.5351 1.9293 -1.3833 32 1 1.7915 3.1586 -1.1027 33 1 3.4546 1.7205 -2.2491 34 1 2.1984 0.4910 -2.5294 35 1 1.2878 2.9493 -3.5802 36 1 1.0393 2.5169 -6.2289 37 1 2.2944 3.7475 -5.9488 38 1 4.0396 1.8947 -11.2622 39 1 0.4916 2.0230 1.2930 40 1 1.8591 3.1502 1.1279 41 1 3.8341 2.9039 2.4463 42 1 4.8874 1.8830 4.4534 43 1 3.8026 -0.1013 5.4868 44 1 1.7268 -0.9872 4.5021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753078936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:57 Heat of formation + Delta-G solvation = 6.466124 kcal Electronic energy + Delta-G solvation = -23639.294429 eV Core-core repulsion = 20104.100098 eV Total energy + Delta-G solvation = -3535.194330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69848 -39.26398 -38.22540 -34.60166 -32.85630 -32.43834 -32.41164 -30.86820 -29.70564 -28.05596 -25.87817 -25.43709 -23.97622 -23.79699 -22.18456 -20.52653 -20.07600 -17.80263 -17.18917 -16.83839 -16.60510 -16.28643 -16.04661 -15.80677 -15.21601 -15.17293 -14.78945 -14.35225 -14.12868 -13.94164 -13.57987 -13.50612 -13.33021 -13.03967 -12.97113 -12.53748 -12.30860 -12.24519 -12.05389 -11.77086 -11.59845 -11.36008 -11.05174 -11.00931 -10.85087 -10.74928 -10.21608 -9.81972 -9.79507 -9.44416 -9.35353 -9.05521 -8.82804 -8.60474 -8.21286 -6.48001 -6.20024 -3.90460 0.71603 0.91354 2.95386 3.14451 3.23108 3.23585 3.30326 3.38579 3.65914 3.88951 4.09061 4.21946 4.29263 4.48375 4.64531 4.70014 4.74984 4.84052 4.89902 5.01704 5.10398 5.15029 5.16388 5.18804 5.25005 5.28259 5.33370 5.38243 5.63445 5.71119 5.76511 5.77437 5.81663 5.86981 5.93718 5.97275 6.11075 6.16046 6.31898 6.59312 6.68344 6.77611 7.61034 7.62601 7.74062 8.36756 8.65690 9.25189 10.87397 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036548 B = 0.001784 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.938043 B =15687.705407 C =15830.362877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.046 3.954 3 N -0.526 5.526 4 C 0.041 3.959 5 C 0.127 3.873 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.099 3.901 20 C 0.137 3.863 21 C -0.152 4.152 22 C -0.076 4.076 23 C -0.176 4.176 24 C 0.098 3.902 25 N -0.478 5.478 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 0.504 31.282 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.082 4.082 3 N -0.250 5.250 4 C -0.088 4.088 5 C 0.002 3.998 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.029 4.029 20 C -0.001 4.001 21 C -0.172 4.172 22 C -0.102 4.102 23 C -0.196 4.196 24 C -0.059 4.059 25 N -0.188 5.188 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.201 -1.382 30.688 31.005 hybrid contribution -1.798 2.298 -0.310 2.934 sum -5.999 0.916 30.378 30.978 Atomic orbital electron populations 1.22336 0.97863 1.02652 1.01727 1.22256 0.93393 0.89263 1.03283 1.62069 1.59636 1.02759 1.00557 1.22308 0.98205 0.98701 0.89545 1.21136 0.99521 0.96681 0.82426 1.45918 1.43878 1.42419 1.07239 1.20276 0.81162 0.82873 0.83881 1.90710 1.30805 1.31680 1.85836 1.23528 1.05401 1.03261 0.98173 1.85414 1.51108 1.51759 0.95098 1.22870 1.26640 1.24748 0.94117 0.90933 1.24990 0.94909 0.95649 0.98055 1.70017 1.27266 1.32575 1.20418 0.86169 0.79294 0.79762 0.80268 1.20281 1.20759 1.19720 1.21023 0.98354 0.97119 0.86401 1.21023 0.92334 0.91663 0.95038 1.21971 0.96331 1.01856 0.97036 1.21616 0.99132 0.94800 0.94684 1.22147 0.97718 0.97913 1.01824 1.22730 0.93037 0.98425 0.91752 1.67502 1.33111 1.08934 1.09211 0.92692 0.92040 0.91921 0.90442 0.89909 0.93187 0.90162 0.90828 0.91670 0.77007 0.89257 0.89223 0.92193 0.92158 0.89166 0.84654 0.84837 0.84922 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 9.28 37.15 0.34 -1.27 16 2 C 0.05 0.44 5.63 -3.83 -0.02 0.42 16 3 N -0.53 -4.78 4.66 -236.08 -1.10 -5.88 16 4 C 0.04 0.35 4.95 -3.83 -0.02 0.33 16 5 C 0.13 1.54 5.72 -4.04 -0.02 1.52 16 6 N -0.74 -9.90 5.56 -60.29 -0.33 -10.23 16 7 C 0.53 10.07 7.85 -10.99 -0.09 9.98 16 8 O -0.52 -12.01 15.86 5.55 0.09 -11.92 16 9 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 11 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 15 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.10 0.77 5.05 -4.98 -0.03 0.74 16 20 C 0.14 1.18 5.70 -82.59 -0.47 0.71 16 21 C -0.15 -1.11 9.72 -39.44 -0.38 -1.50 16 22 C -0.08 -0.48 10.18 -39.28 -0.40 -0.88 16 23 C -0.18 -1.06 10.11 -39.44 -0.40 -1.46 16 24 C 0.10 0.70 11.18 -17.55 -0.20 0.51 16 25 N -0.48 -4.34 8.81 -9.48 -0.08 -4.43 16 26 H 0.05 0.47 6.32 -51.93 -0.33 0.15 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.54 6.22 -51.93 -0.32 0.22 16 29 H 0.08 0.81 6.60 -51.93 -0.34 0.47 16 30 H 0.08 0.87 6.27 -51.92 -0.33 0.54 16 31 H 0.05 0.41 5.90 -51.93 -0.31 0.10 16 32 H 0.08 0.59 7.82 -51.93 -0.41 0.19 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.88 6.71 -51.93 -0.35 0.53 16 35 H 0.40 4.00 8.47 -40.82 -0.35 3.66 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.06 0.47 6.01 -51.93 -0.31 0.16 16 40 H 0.09 0.55 7.76 -51.93 -0.40 0.15 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -35.55 375.05 -9.91 -45.45 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.37 Total: 1.14 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.26 Total: -6.81 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.78 Total: -46.11 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.55 -9.91 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753078936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.921 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds