Wall clock time and date at job start Tue Mar 31 2020 13:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.46771 * 2 1 4 4 C 1.46893 * 111.00025 * 297.39201 * 3 2 1 5 5 C 1.52998 * 109.47288 * 288.30214 * 4 3 2 6 6 N 1.46503 * 109.47178 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00246 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99944 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00318 * 179.97438 * 7 6 5 10 10 S 1.81005 * 109.47340 * 179.97438 * 9 7 6 11 11 C 1.76200 * 100.00107 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00020 * 0.02562 * 11 10 9 13 13 C 1.38791 * 119.99854 * 179.97438 * 11 10 9 14 14 N 1.31628 * 120.00506 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47212 * 90.00268 * 15 13 11 17 17 H 1.48498 * 109.47271 * 210.00396 * 15 13 11 18 18 H 1.48500 * 109.47448 * 330.00459 * 15 13 11 19 19 C 1.46898 * 111.00163 * 61.35241 * 3 2 1 20 20 C 1.50698 * 109.47700 * 66.04444 * 19 3 2 21 21 C 1.38220 * 119.61722 * 95.01836 * 20 19 3 22 22 C 1.38637 * 119.16128 * 179.97438 * 21 20 19 23 23 C 1.38667 * 118.41766 * 0.02562 * 22 21 20 24 24 C 1.38180 * 119.16611 * 359.97438 * 23 22 21 25 25 N 1.31855 * 119.61888 * 275.00323 * 20 19 3 26 26 H 1.09007 * 109.46739 * 61.78905 * 1 2 3 27 27 H 1.08999 * 109.47307 * 181.77993 * 1 2 3 28 28 H 1.08992 * 109.48004 * 301.78699 * 1 2 3 29 29 H 1.08992 * 109.47570 * 239.99451 * 2 1 3 30 30 H 1.09008 * 109.46824 * 119.99077 * 2 1 3 31 31 H 1.08998 * 109.47097 * 48.30118 * 4 3 2 32 32 H 1.09005 * 109.47261 * 168.30015 * 4 3 2 33 33 H 1.09004 * 109.47346 * 299.98039 * 5 4 3 34 34 H 1.08995 * 109.47545 * 59.98540 * 5 4 3 35 35 H 0.97005 * 120.00190 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.47371 * 300.00571 * 9 7 6 37 37 H 1.09003 * 109.47043 * 60.00587 * 9 7 6 38 38 H 0.96996 * 120.00218 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47346 * 306.04109 * 19 3 2 40 40 H 1.09005 * 109.47146 * 186.04614 * 19 3 2 41 41 H 1.08000 * 120.42291 * 359.96165 * 21 20 19 42 42 H 1.07998 * 120.79272 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.42111 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.62091 * 180.27666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.6001 2.0916 -1.2176 5 6 2.3896 1.5579 -2.4146 6 7 1.9708 2.2622 -3.6290 7 6 2.5353 1.9563 -4.8141 8 8 3.3896 1.0976 -4.8751 9 6 2.1041 2.6804 -6.0634 10 16 3.0393 2.0501 -7.4792 11 6 2.3543 3.0421 -8.7643 12 1 1.5900 3.7699 -8.5355 13 6 2.7979 2.8888 -10.0705 14 7 3.7299 2.0021 -10.3493 15 14 2.0723 3.9409 -11.4328 16 1 2.8672 5.1876 -11.5722 17 1 2.1058 3.1869 -12.7117 18 1 0.6671 4.2848 -11.0976 19 6 1.5751 2.1005 1.2035 20 6 2.2244 1.4908 2.4191 21 6 3.3887 2.0418 2.9204 22 6 3.9778 1.4736 4.0394 23 6 3.3712 0.3672 4.6145 24 6 2.2078 -0.1285 4.0575 25 7 1.6752 0.4380 2.9923 26 1 -0.3633 0.4858 -0.9057 27 1 -0.3634 -1.0271 0.0319 28 1 -0.3635 0.5413 0.8734 29 1 1.8933 -0.5139 -0.8898 30 1 1.8932 -0.5137 0.8901 31 1 0.5351 1.9293 -1.3833 32 1 1.7915 3.1586 -1.1027 33 1 3.4546 1.7205 -2.2491 34 1 2.1984 0.4910 -2.5294 35 1 1.2878 2.9493 -3.5802 36 1 1.0393 2.5169 -6.2289 37 1 2.2944 3.7475 -5.9488 38 1 4.0396 1.8947 -11.2622 39 1 0.4916 2.0230 1.2930 40 1 1.8591 3.1502 1.1279 41 1 3.8341 2.9039 2.4463 42 1 4.8874 1.8830 4.4534 43 1 3.8026 -0.1013 5.4868 44 1 1.7268 -0.9872 4.5021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753078936.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:57 Heat of formation + Delta-G solvation = -19.219752 kcal Electronic energy + Delta-G solvation = -23640.408252 eV Core-core repulsion = 20104.100098 eV Total energy + Delta-G solvation = -3536.308154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24276 -40.61791 -39.06207 -35.84414 -34.57461 -33.39978 -33.01891 -31.95177 -30.77384 -29.06845 -27.65232 -26.54582 -24.76520 -24.33188 -22.84498 -21.84514 -20.96433 -19.78732 -17.86926 -17.69532 -17.48377 -17.32544 -17.01977 -16.86824 -16.47251 -16.42272 -16.19844 -15.59953 -15.25875 -14.85620 -14.58446 -14.46903 -14.37277 -14.08594 -13.94518 -13.56015 -13.48603 -13.15504 -12.98990 -12.91401 -12.87915 -12.60170 -12.49845 -12.35097 -12.15430 -11.72240 -11.63980 -11.13304 -10.98680 -10.72844 -10.34402 -10.26081 -10.10497 -9.93150 -9.28548 -8.65839 -8.33521 -6.11787 0.20684 0.41940 1.27589 1.43486 1.47785 1.58159 1.62632 2.17825 2.28718 2.78501 3.00592 3.21460 3.35414 3.45835 3.76829 3.85313 4.00208 4.06140 4.09421 4.20106 4.26736 4.30174 4.31367 4.35389 4.44762 4.47499 4.52693 4.58653 4.63575 4.79711 4.85989 4.89661 4.92250 5.06036 5.13159 5.27586 5.34190 5.38355 5.41886 5.43125 5.83763 5.99606 6.02758 6.20986 6.52391 7.07680 7.10380 7.26402 8.75729 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.036548 B = 0.001784 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.938043 B =15687.705407 C =15830.362877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.052 3.948 5 C 0.130 3.870 6 N -0.710 5.710 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.155 6.155 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.258 1.258 19 C 0.102 3.898 20 C 0.116 3.884 21 C -0.162 4.162 22 C -0.083 4.083 23 C -0.175 4.175 24 C 0.081 3.919 25 N -0.502 5.502 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 2.549 32.586 33.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.078 4.078 3 N -0.259 5.259 4 C -0.076 4.076 5 C 0.006 3.994 6 N -0.365 5.365 7 C 0.319 3.681 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.072 5.928 11 C -0.693 4.693 12 H 0.102 0.898 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.025 4.025 20 C -0.021 4.021 21 C -0.182 4.182 22 C -0.109 4.109 23 C -0.195 4.195 24 C -0.076 4.076 25 N -0.212 5.212 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.715 0.697 32.047 32.560 hybrid contribution -1.330 1.626 -0.524 2.165 sum -7.045 2.323 31.523 32.384 Atomic orbital electron populations 1.22246 0.96997 1.02658 1.01798 1.22129 0.94006 0.89669 1.01984 1.62002 1.60083 1.02589 1.01240 1.22207 0.98012 0.99551 0.87862 1.21163 0.99300 0.95964 0.82984 1.45598 1.42963 1.42005 1.05922 1.20080 0.80869 0.82220 0.84914 1.90701 1.33307 1.33986 1.86604 1.23363 1.05075 1.04102 0.95386 1.85623 1.54001 1.53706 0.99440 1.23210 1.26815 1.24789 0.94528 0.89779 1.26142 0.95146 0.96959 1.00997 1.70187 1.28941 1.34557 1.21144 0.84940 0.78980 0.77683 0.76279 1.19287 1.20378 1.18142 1.21065 0.98237 0.97766 0.85452 1.21202 0.93155 0.92130 0.95623 1.22197 0.96132 1.02345 0.97544 1.21975 0.99811 0.94753 0.94329 1.22459 0.97108 0.97632 1.02255 1.23129 0.93780 0.99041 0.91636 1.67475 1.34059 1.09544 1.10145 0.92452 0.92148 0.91799 0.91916 0.90985 0.91993 0.87918 0.92424 0.93194 0.74511 0.87081 0.86943 0.92021 0.92275 0.87341 0.83494 0.82594 0.82461 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 9.28 71.98 0.67 -2.26 16 2 C 0.05 0.95 5.63 86.30 0.49 1.44 16 3 N -0.54 -9.09 4.66 -900.83 -4.20 -13.28 16 4 C 0.05 0.78 4.95 86.30 0.43 1.21 16 5 C 0.13 3.04 5.72 86.38 0.49 3.53 16 6 N -0.71 -17.66 5.56 -463.06 -2.57 -20.23 16 7 C 0.53 19.85 7.85 87.66 0.69 20.54 16 8 O -0.57 -27.03 15.86 -3.05 -0.05 -27.08 16 9 C -0.13 -5.04 6.16 71.23 0.44 -4.60 16 10 S -0.15 -8.66 20.57 -56.49 -1.16 -9.83 16 11 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 12 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.70 5.49 84.86 0.47 1.16 16 14 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 15 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 19 C 0.10 1.43 5.05 85.56 0.43 1.86 16 20 C 0.12 1.89 5.70 42.55 0.24 2.13 16 21 C -0.16 -2.17 9.72 22.36 0.22 -1.95 16 22 C -0.08 -0.90 10.18 22.47 0.23 -0.67 16 23 C -0.17 -1.82 10.11 22.36 0.23 -1.59 16 24 C 0.08 1.10 11.18 84.67 0.95 2.04 16 25 N -0.50 -8.88 8.81 -183.90 -1.62 -10.50 16 26 H 0.06 0.90 6.32 -2.38 -0.02 0.89 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.04 6.22 -2.39 -0.01 1.03 16 29 H 0.06 1.35 6.60 -2.39 -0.02 1.33 16 30 H 0.07 1.53 6.27 -2.38 -0.01 1.52 16 31 H 0.06 0.83 5.90 -2.39 -0.01 0.82 16 32 H 0.10 1.15 7.82 -2.38 -0.02 1.13 16 33 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.35 6.71 -2.39 -0.02 1.34 16 35 H 0.42 7.02 8.47 -92.70 -0.79 6.23 16 36 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.06 0.84 6.01 -2.39 -0.01 0.82 16 40 H 0.11 1.07 7.76 -2.38 -0.02 1.05 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 43 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -79.91 375.05 -0.45 -80.37 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.23 Total: 18.69 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 6.61 Total: -7.71 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -8.10 Total: -100.08 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.83 kcal Total: -79.91 -0.45 -80.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753078936.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.146 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds