Wall clock time and date at job start Tue Mar 31 2020 14:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35127 * 125.61504 * 2 1 4 4 C 1.40366 * 107.11272 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.64308 * 179.97438 * 4 3 2 6 6 C 1.36538 * 106.70753 * 0.02562 * 4 3 2 7 7 C 1.46662 * 125.98415 * 179.97438 * 6 4 3 8 8 O 1.21698 * 120.00177 * 352.81319 * 7 6 4 9 9 N 1.34773 * 119.99651 * 173.07886 * 7 6 4 10 10 C 1.46497 * 120.00343 * 3.27136 * 9 7 6 11 11 C 1.46501 * 119.99770 * 183.27429 * 9 7 6 12 12 C 1.52996 * 109.47592 * 90.00019 * 11 9 7 13 13 N 1.46896 * 109.47565 * 179.97438 * 12 11 9 14 14 C 1.46894 * 111.00275 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47295 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99833 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99997 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00094 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99400 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00073 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00205 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00245 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47224 * 90.00133 * 22 20 18 24 24 H 1.48498 * 109.47094 * 210.00000 * 22 20 18 25 25 H 1.48498 * 109.47221 * 330.00046 * 22 20 18 26 26 O 1.33928 * 125.61664 * 180.31265 * 2 1 3 27 27 H 1.09004 * 109.47270 * 90.00014 * 1 2 3 28 28 H 1.09000 * 109.47021 * 209.99743 * 1 2 3 29 29 H 1.09001 * 109.47317 * 329.99437 * 1 2 3 30 30 H 1.08008 * 126.44166 * 0.05804 * 3 2 1 31 31 H 1.08996 * 109.47417 * 270.00232 * 5 4 3 32 32 H 1.09005 * 109.47238 * 30.00475 * 5 4 3 33 33 H 1.09004 * 109.47264 * 150.00167 * 5 4 3 34 34 H 1.09005 * 109.46866 * 83.97989 * 10 9 7 35 35 H 1.09006 * 109.47403 * 203.98100 * 10 9 7 36 36 H 1.09000 * 109.46954 * 323.98207 * 10 9 7 37 37 H 1.09003 * 109.47161 * 209.99927 * 11 9 7 38 38 H 1.09003 * 109.47187 * 329.99479 * 11 9 7 39 39 H 1.08995 * 109.46924 * 300.00409 * 12 11 9 40 40 H 1.09011 * 109.47124 * 59.99808 * 12 11 9 41 41 H 1.00901 * 110.99733 * 56.04605 * 13 12 11 42 42 H 1.08996 * 109.47677 * 300.00193 * 14 13 12 43 43 H 1.09008 * 109.47306 * 60.00320 * 14 13 12 44 44 H 0.97005 * 120.00256 * 0.02562 * 17 15 14 45 45 H 0.96995 * 120.00687 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8616 1.5143 -0.0014 6 6 3.5823 -0.7116 -0.0015 7 6 4.7414 -1.6101 -0.0029 8 8 5.8629 -1.1564 -0.1352 9 7 4.5643 -2.9388 0.1369 10 6 3.2105 -3.4928 0.2183 11 6 5.7255 -3.8292 0.2076 12 6 6.1557 -3.9917 1.6668 13 7 7.3197 -4.8849 1.7377 14 6 7.7619 -5.0642 3.1270 15 6 8.9545 -5.9849 3.1598 16 8 9.3932 -6.4460 2.1273 17 7 9.5342 -6.2951 4.3362 18 6 10.6195 -7.1323 4.3660 19 1 11.0096 -7.5435 3.4467 20 6 11.2168 -7.4525 5.5789 21 7 12.2574 -8.2546 5.6075 22 14 10.5417 -6.7418 7.1691 23 1 9.5086 -7.6553 7.7202 24 1 11.6448 -6.5917 8.1518 25 1 9.9349 -5.4136 6.8993 26 8 2.2870 -1.0887 -0.0059 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.9612 2.1261 0.0009 31 1 5.1593 1.7218 -1.0292 32 1 4.6515 2.4524 0.5125 33 1 5.6687 0.9917 0.5121 34 1 2.8153 -3.6355 -0.7875 35 1 3.2407 -4.4514 0.7363 36 1 2.5683 -2.8035 0.7666 37 1 5.4619 -4.8035 -0.2041 38 1 6.5467 -3.4017 -0.3679 39 1 6.4192 -3.0175 2.0785 40 1 5.3344 -4.4192 2.2423 41 1 8.0731 -4.5435 1.1599 42 1 8.0372 -4.0974 3.5484 43 1 6.9519 -5.4985 3.7130 44 1 9.1836 -5.9261 5.1620 45 1 12.6742 -8.4785 6.4542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753179743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:12 Heat of formation + Delta-G solvation = -45.181983 kcal Electronic energy + Delta-G solvation = -26491.660582 eV Core-core repulsion = 22511.473751 eV Total energy + Delta-G solvation = -3980.186831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.14873 -39.91898 -38.45701 -36.62450 -35.21105 -34.30505 -33.85510 -32.88698 -31.65222 -30.19343 -28.36041 -27.76075 -27.10762 -25.71421 -23.84468 -22.46837 -21.87057 -21.01038 -19.66870 -19.33812 -18.33523 -17.79034 -17.06604 -16.54118 -16.27729 -15.83018 -15.57102 -15.21469 -14.88327 -14.48325 -14.13406 -13.92410 -13.76340 -13.74093 -13.54330 -13.39382 -13.25522 -13.21125 -13.15458 -13.01030 -12.72367 -12.47562 -12.40219 -12.14540 -11.96587 -11.86292 -11.64790 -11.21801 -11.06524 -10.58013 -10.36703 -10.01474 -9.95909 -9.55537 -9.12570 -8.73762 -8.56273 -8.19154 -8.14273 -6.29247 -3.80635 0.70142 1.92547 2.20331 2.69073 2.87774 3.04299 3.08340 3.16349 3.76055 4.03404 4.11607 4.21464 4.33755 4.41700 4.75112 4.82499 4.89321 4.90653 4.93653 5.00958 5.02806 5.12620 5.21141 5.23306 5.25887 5.35252 5.43658 5.44085 5.54767 5.62536 5.73311 5.75807 5.80112 5.84191 5.85710 5.94811 6.09648 6.18717 6.52933 6.99692 7.05531 7.55283 7.60147 7.75817 8.16377 8.61669 8.96782 9.44293 9.84555 10.83878 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.001992 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.511658 B =14050.680221 C =14160.818886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.223 4.223 4 C -0.082 4.082 5 C -0.094 4.094 6 C -0.087 4.087 7 C 0.600 3.400 8 O -0.515 6.515 9 N -0.606 5.606 10 C 0.074 3.926 11 C 0.117 3.883 12 C 0.045 3.955 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.451 3.549 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 O -0.156 6.156 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.353 0.647 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.397 19.466 -9.030 34.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 C -0.242 4.242 4 C -0.085 4.085 5 C -0.151 4.151 6 C -0.138 4.138 7 C 0.388 3.612 8 O -0.392 6.392 9 N -0.339 5.339 10 C -0.069 4.069 11 C -0.006 4.006 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.236 3.764 16 O -0.445 6.445 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 O -0.053 6.053 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.172 0.828 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.173 0.827 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.781 18.354 -9.689 33.882 hybrid contribution -0.156 1.445 1.681 2.222 sum -26.937 19.799 -8.008 34.376 Atomic orbital electron populations 1.20415 0.84571 1.04511 1.03960 1.22863 0.94381 0.84554 1.01976 1.21474 0.91829 0.99818 1.11041 1.20630 0.96419 0.92195 0.99225 1.20413 0.93748 0.97890 1.03009 1.21759 0.81886 0.93998 1.16134 1.16670 0.86093 0.81234 0.77156 1.90874 1.22627 1.75425 1.50293 1.47695 1.08194 1.05933 1.72037 1.22037 0.82158 1.00208 1.02449 1.21499 0.88033 0.93928 0.97091 1.22271 0.94672 0.94981 0.96608 1.60009 1.09787 1.50758 1.09348 1.21693 0.97715 0.98424 0.90502 1.19685 0.86195 0.86037 0.84458 1.90564 1.65406 1.56069 1.32509 1.42203 1.29617 1.44577 1.06642 1.19437 1.04761 1.22167 0.96952 0.86252 1.25040 0.96235 0.97017 0.97917 1.69621 1.20932 1.34655 1.26949 0.86666 0.79448 0.79341 0.83901 1.19608 1.20188 1.19533 1.84232 1.15923 1.33929 1.71248 0.89572 0.90118 0.88999 0.82818 0.90620 0.91454 0.89685 0.92171 0.90115 0.90093 0.88835 0.89269 0.95050 0.90994 0.82734 0.93664 0.89477 0.79690 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.41 36.01 0.37 0.13 16 2 C 0.01 0.10 7.31 -35.41 -0.26 -0.15 16 3 C -0.22 -1.76 10.73 -39.89 -0.43 -2.19 16 4 C -0.08 -0.84 6.20 -104.44 -0.65 -1.49 16 5 C -0.09 -0.88 9.75 36.00 0.35 -0.53 16 6 C -0.09 -0.97 6.76 -36.80 -0.25 -1.22 16 7 C 0.60 7.62 7.64 -12.86 -0.10 7.52 16 8 O -0.51 -7.87 14.40 5.19 0.07 -7.79 16 9 N -0.61 -6.55 2.87 -183.13 -0.53 -7.07 16 10 C 0.07 0.57 9.62 59.85 0.58 1.15 16 11 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 12 C 0.05 0.58 6.01 -3.83 -0.02 0.55 16 13 N -0.67 -10.68 6.13 -115.06 -0.70 -11.39 16 14 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 15 C 0.45 10.47 7.82 -10.99 -0.09 10.39 16 16 O -0.56 -15.41 15.78 5.55 0.09 -15.33 16 17 N -0.59 -14.36 5.09 -10.97 -0.06 -14.41 16 18 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 19 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 22 Si 0.88 19.63 27.74 -169.99 -4.71 14.91 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 26 O -0.16 -1.44 7.30 5.02 0.04 -1.40 16 27 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.95 6.62 -51.93 -0.34 0.61 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.52 8.03 -51.93 -0.42 0.11 16 36 H 0.08 0.62 5.42 -51.93 -0.28 0.34 16 37 H 0.09 0.97 8.07 -51.93 -0.42 0.56 16 38 H 0.09 1.14 7.37 -51.93 -0.38 0.76 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.35 5.95 8.43 -39.29 -0.33 5.62 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.33 8.14 -51.92 -0.42 0.90 16 44 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -35.40 378.61 -6.73 -42.13 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.62 Total: 11.46 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -0.79 Total: 8.44 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.51 Total: -58.13 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.20 Total: -24.52 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.40 -6.73 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753179743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.056 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds