Wall clock time and date at job start Tue Mar 31 2020 14:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35127 * 125.61504 * 2 1 4 4 C 1.40366 * 107.11272 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.64308 * 179.97438 * 4 3 2 6 6 C 1.36538 * 106.70753 * 0.02562 * 4 3 2 7 7 C 1.46662 * 125.98415 * 179.97438 * 6 4 3 8 8 O 1.21698 * 120.00177 * 352.81319 * 7 6 4 9 9 N 1.34773 * 119.99651 * 173.07886 * 7 6 4 10 10 C 1.46497 * 120.00343 * 3.27136 * 9 7 6 11 11 C 1.46501 * 119.99770 * 183.27429 * 9 7 6 12 12 C 1.52996 * 109.47592 * 90.00019 * 11 9 7 13 13 N 1.46896 * 109.47565 * 179.97438 * 12 11 9 14 14 C 1.46894 * 111.00275 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47295 * 179.97438 * 14 13 12 16 16 O 1.21286 * 119.99833 * 0.02562 * 15 14 13 17 17 N 1.34772 * 119.99997 * 179.97438 * 15 14 13 18 18 C 1.37100 * 120.00094 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99400 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00073 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00205 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00245 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47224 * 90.00133 * 22 20 18 24 24 H 1.48498 * 109.47094 * 210.00000 * 22 20 18 25 25 H 1.48498 * 109.47221 * 330.00046 * 22 20 18 26 26 O 1.33928 * 125.61664 * 180.31265 * 2 1 3 27 27 H 1.09004 * 109.47270 * 90.00014 * 1 2 3 28 28 H 1.09000 * 109.47021 * 209.99743 * 1 2 3 29 29 H 1.09001 * 109.47317 * 329.99437 * 1 2 3 30 30 H 1.08008 * 126.44166 * 0.05804 * 3 2 1 31 31 H 1.08996 * 109.47417 * 270.00232 * 5 4 3 32 32 H 1.09005 * 109.47238 * 30.00475 * 5 4 3 33 33 H 1.09004 * 109.47264 * 150.00167 * 5 4 3 34 34 H 1.09005 * 109.46866 * 83.97989 * 10 9 7 35 35 H 1.09006 * 109.47403 * 203.98100 * 10 9 7 36 36 H 1.09000 * 109.46954 * 323.98207 * 10 9 7 37 37 H 1.09003 * 109.47161 * 209.99927 * 11 9 7 38 38 H 1.09003 * 109.47187 * 329.99479 * 11 9 7 39 39 H 1.08995 * 109.46924 * 300.00409 * 12 11 9 40 40 H 1.09011 * 109.47124 * 59.99808 * 12 11 9 41 41 H 1.00901 * 110.99733 * 56.04605 * 13 12 11 42 42 H 1.08996 * 109.47677 * 300.00193 * 14 13 12 43 43 H 1.09008 * 109.47306 * 60.00320 * 14 13 12 44 44 H 0.97005 * 120.00256 * 0.02562 * 17 15 14 45 45 H 0.96995 * 120.00687 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 4.8616 1.5143 -0.0014 6 6 3.5823 -0.7116 -0.0015 7 6 4.7414 -1.6101 -0.0029 8 8 5.8629 -1.1564 -0.1352 9 7 4.5643 -2.9388 0.1369 10 6 3.2105 -3.4928 0.2183 11 6 5.7255 -3.8292 0.2076 12 6 6.1557 -3.9917 1.6668 13 7 7.3197 -4.8849 1.7377 14 6 7.7619 -5.0642 3.1270 15 6 8.9545 -5.9849 3.1598 16 8 9.3932 -6.4460 2.1273 17 7 9.5342 -6.2951 4.3362 18 6 10.6195 -7.1323 4.3660 19 1 11.0096 -7.5435 3.4467 20 6 11.2168 -7.4525 5.5789 21 7 12.2574 -8.2546 5.6075 22 14 10.5417 -6.7418 7.1691 23 1 9.5086 -7.6553 7.7202 24 1 11.6448 -6.5917 8.1518 25 1 9.9349 -5.4136 6.8993 26 8 2.2870 -1.0887 -0.0059 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.9612 2.1261 0.0009 31 1 5.1593 1.7218 -1.0292 32 1 4.6515 2.4524 0.5125 33 1 5.6687 0.9917 0.5121 34 1 2.8153 -3.6355 -0.7875 35 1 3.2407 -4.4514 0.7363 36 1 2.5683 -2.8035 0.7666 37 1 5.4619 -4.8035 -0.2041 38 1 6.5467 -3.4017 -0.3679 39 1 6.4192 -3.0175 2.0785 40 1 5.3344 -4.4192 2.2423 41 1 8.0731 -4.5435 1.1599 42 1 8.0372 -4.0974 3.5484 43 1 6.9519 -5.4985 3.7130 44 1 9.1836 -5.9261 5.1620 45 1 12.6742 -8.4785 6.4542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753179743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:12 Heat of formation + Delta-G solvation = -72.310785 kcal Electronic energy + Delta-G solvation = -26492.836975 eV Core-core repulsion = 22511.473751 eV Total energy + Delta-G solvation = -3981.363225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.79759 -40.83244 -40.30316 -37.68510 -36.41755 -35.82546 -35.01452 -33.76962 -33.39554 -31.27222 -28.98398 -28.61413 -28.15687 -26.94052 -25.40710 -23.54253 -22.46895 -21.83798 -21.29748 -20.43667 -20.22062 -18.59579 -17.97154 -17.65200 -17.48450 -17.14038 -16.75934 -16.41283 -16.11535 -15.64975 -15.46482 -15.08909 -14.92948 -14.66752 -14.45368 -14.33432 -14.21713 -14.03651 -13.88344 -13.87331 -13.74890 -13.68545 -13.47265 -13.26884 -13.04505 -12.84829 -12.73449 -12.53774 -12.42604 -12.13342 -11.98988 -11.52903 -11.28125 -10.67371 -10.50140 -10.26506 -9.94177 -9.47244 -9.38886 -8.42358 -6.03595 -0.03557 1.29668 1.30707 1.34787 1.43765 1.48587 1.90683 1.92703 2.04956 2.22115 2.73639 3.13300 3.35890 3.49142 3.74293 3.76399 3.94584 4.05753 4.11866 4.23629 4.39255 4.44525 4.45211 4.47320 4.51337 4.53248 4.62029 4.65165 4.71295 4.74681 4.78201 4.87352 4.95650 4.98759 5.13755 5.25574 5.31517 5.49708 5.51467 5.83128 5.86975 5.96894 6.18073 6.24661 6.57684 6.85972 6.87336 7.37288 7.93361 8.75194 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.001992 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.511658 B =14050.680221 C =14160.818886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 C -0.234 4.234 4 C -0.092 4.092 5 C -0.092 4.092 6 C -0.117 4.117 7 C 0.593 3.407 8 O -0.555 6.555 9 N -0.603 5.603 10 C 0.072 3.928 11 C 0.121 3.879 12 C 0.056 3.944 13 N -0.678 5.678 14 C 0.063 3.937 15 C 0.448 3.552 16 O -0.613 6.613 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.233 1.233 26 O -0.158 6.158 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.179 0.821 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.091 0.909 41 H 0.344 0.656 42 H 0.071 0.929 43 H 0.119 0.881 44 H 0.390 0.610 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.586 21.486 -7.151 38.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.253 4.253 4 C -0.095 4.095 5 C -0.149 4.149 6 C -0.168 4.168 7 C 0.383 3.617 8 O -0.436 6.436 9 N -0.335 5.335 10 C -0.069 4.069 11 C -0.001 4.001 12 C -0.074 4.074 13 N -0.311 5.311 14 C -0.070 4.070 15 C 0.236 3.764 16 O -0.497 6.497 17 N -0.231 5.231 18 C -0.459 4.459 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.574 5.574 22 Si 0.786 3.214 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.157 1.157 26 O -0.055 6.055 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.196 0.804 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.110 0.890 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.137 0.863 44 H 0.226 0.774 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -31.025 20.372 -7.815 37.930 hybrid contribution 1.092 0.804 0.949 1.655 sum -29.934 21.177 -6.866 37.304 Atomic orbital electron populations 1.20663 0.81366 1.06020 1.05336 1.23733 0.95993 0.83824 0.99141 1.21781 0.90661 1.01348 1.11469 1.20965 0.97727 0.92217 0.98567 1.20388 0.93009 0.98490 1.02986 1.21501 0.82338 0.94037 1.18928 1.16968 0.86192 0.81880 0.76697 1.90840 1.24202 1.76233 1.52318 1.47768 1.09097 1.05363 1.71231 1.22216 0.80474 1.00843 1.03368 1.21379 0.88054 0.94438 0.96270 1.22246 0.93713 0.93959 0.97489 1.60032 1.10364 1.52041 1.08649 1.21628 0.95540 0.97951 0.91835 1.20899 0.86863 0.85362 0.83246 1.90544 1.67073 1.57813 1.34296 1.42018 1.28753 1.44334 1.08033 1.19016 1.07146 1.24345 0.95409 0.92622 1.26131 0.96007 0.96807 1.02467 1.69802 1.22678 1.36173 1.28701 0.85353 0.79066 0.80175 0.76850 1.17916 1.19956 1.15683 1.84220 1.15230 1.34711 1.71380 0.88060 0.89135 0.86956 0.80381 0.90589 0.89282 0.92067 0.91274 0.88417 0.89740 0.87518 0.91236 0.95842 0.89038 0.83723 0.91089 0.86269 0.77446 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.41 71.24 0.74 0.54 16 2 C 0.03 0.30 7.31 24.97 0.18 0.49 16 3 C -0.23 -3.19 10.73 22.07 0.24 -2.95 16 4 C -0.09 -1.83 6.20 -19.74 -0.12 -1.95 16 5 C -0.09 -1.74 9.75 71.24 0.69 -1.05 16 6 C -0.12 -2.57 6.76 24.07 0.16 -2.41 16 7 C 0.59 15.28 7.64 86.44 0.66 15.94 16 8 O -0.55 -17.85 14.40 -4.34 -0.06 -17.91 16 9 N -0.60 -12.62 2.87 -851.51 -2.45 -15.07 16 10 C 0.07 0.98 9.62 127.77 1.23 2.21 16 11 C 0.12 2.73 5.67 86.38 0.49 3.22 16 12 C 0.06 1.33 6.01 86.30 0.52 1.85 16 13 N -0.68 -21.04 6.13 -517.94 -3.17 -24.22 16 14 C 0.06 2.02 6.17 85.56 0.53 2.54 16 15 C 0.45 20.84 7.82 87.66 0.69 21.52 16 16 O -0.61 -34.81 15.78 -3.05 -0.05 -34.86 16 17 N -0.59 -28.44 5.09 -306.99 -1.56 -30.00 16 18 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 19 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 20 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 21 N -0.93 -56.84 13.96 21.66 0.30 -56.54 16 22 Si 0.97 39.28 27.74 68.60 1.90 41.18 16 23 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 H -0.23 -8.06 6.52 99.48 0.65 -7.42 16 26 O -0.16 -2.65 7.30 -4.94 -0.04 -2.68 16 27 H 0.10 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.45 6.62 -2.38 -0.02 1.44 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 35 H 0.10 0.99 8.03 -2.38 -0.02 0.97 16 36 H 0.08 1.12 5.42 -2.39 -0.01 1.10 16 37 H 0.11 2.10 8.07 -2.39 -0.02 2.08 16 38 H 0.07 1.85 7.37 -2.39 -0.02 1.83 16 39 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 41 H 0.34 11.73 8.43 -89.69 -0.76 10.98 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.39 15.56 5.76 -92.70 -0.53 15.02 16 45 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -83.76 378.61 1.88 -81.88 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.32 Total: 37.49 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 7.33 Total: 20.73 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.88 Total: -125.83 kcal Atomic # 8 Polarization: -55.31 SS G_CDS: -0.15 Total: -55.45 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.90 Total: 41.18 kcal Total: -83.76 1.88 -81.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753179743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.568 kcal (2) G-P(sol) polarization free energy of solvation -83.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds