Wall clock time and date at job start Tue Mar 31 2020 13:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47087 * 2 1 4 4 C 1.34778 * 119.99968 * 83.96558 * 3 2 1 5 5 O 1.21285 * 120.00184 * 175.19032 * 4 3 2 6 6 C 1.50695 * 120.00014 * 355.19235 * 4 3 2 7 7 C 1.53006 * 109.47204 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47204 * 180.02562 * 7 6 4 9 9 C 1.33646 * 126.04070 * 89.99695 * 8 7 6 10 10 N 1.31771 * 114.50271 * 179.76869 * 9 8 7 11 11 C 1.29032 * 117.12776 * 0.22819 * 10 9 8 12 12 S 1.70977 * 110.16491 * 0.02562 * 11 10 9 13 13 C 1.46497 * 120.00045 * 263.96582 * 3 2 1 14 14 H 1.09002 * 110.88850 * 180.61820 * 13 3 2 15 15 C 1.55158 * 111.00366 * 56.74314 * 13 3 2 16 16 C 1.54324 * 102.94146 * 277.42725 * 15 13 3 17 17 N 1.47024 * 107.26983 * 337.80897 * 16 15 13 18 18 C 1.36937 * 125.64930 * 178.99012 * 17 16 15 19 19 H 1.07996 * 120.00545 * 179.97438 * 18 17 16 20 20 C 1.38823 * 119.99765 * 359.96932 * 18 17 16 21 21 N 1.31613 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99711 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47617 * 59.99900 * 22 20 18 24 24 H 1.48502 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47186 * 299.99842 * 22 20 18 26 26 C 1.47427 * 108.70383 * 358.93585 * 17 16 15 27 27 H 1.08999 * 109.47150 * 53.61813 * 1 2 3 28 28 H 1.08994 * 109.46679 * 173.62252 * 1 2 3 29 29 H 1.09003 * 109.46938 * 293.61992 * 1 2 3 30 30 H 1.08995 * 109.47125 * 239.99889 * 2 1 3 31 31 H 1.09002 * 109.47178 * 119.99678 * 2 1 3 32 32 H 1.08998 * 109.47317 * 59.99893 * 6 4 3 33 33 H 1.09004 * 109.47107 * 299.99749 * 6 4 3 34 34 H 1.08998 * 109.47266 * 59.99623 * 7 6 4 35 35 H 1.09004 * 109.46688 * 299.99766 * 7 6 4 36 36 H 1.08001 * 122.74256 * 0.03957 * 9 8 7 37 37 H 1.07999 * 124.92061 * 179.97438 * 11 10 9 38 38 H 1.08997 * 110.72172 * 35.79022 * 15 13 3 39 39 H 1.09004 * 110.72070 * 159.06539 * 15 13 3 40 40 H 1.09005 * 109.88571 * 97.22232 * 16 15 13 41 41 H 1.08998 * 109.88256 * 218.38942 * 16 15 13 42 42 H 0.97003 * 120.00172 * 179.97438 * 21 20 18 43 43 H 1.08994 * 110.36750 * 265.28857 * 26 17 16 44 44 H 1.09006 * 110.36208 * 142.96721 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1273 2.0575 1.1607 5 8 2.6129 3.1688 1.1719 6 6 1.6458 1.4327 2.4448 7 6 1.8830 2.4026 3.6042 8 6 1.4021 1.7776 4.8883 9 6 2.1304 1.0228 5.7165 10 7 1.4809 0.5959 6.7806 11 6 0.2438 0.9447 6.8939 12 16 -0.2209 1.9099 5.5614 13 6 2.3883 2.0274 -1.2617 14 1 2.7402 3.0444 -1.0889 15 6 1.2031 2.0117 -2.2629 16 6 1.2981 0.6043 -2.8889 17 7 2.6802 0.1375 -2.7057 18 6 3.1721 -1.0765 -3.1048 19 1 4.2071 -1.3259 -2.9237 20 6 2.3401 -1.9869 -3.7421 21 7 1.0788 -1.6830 -3.9632 22 14 3.0109 -3.6433 -4.2858 23 1 3.5155 -4.3856 -3.1029 24 1 1.9297 -4.4255 -4.9374 25 1 4.1208 -3.4355 -5.2502 26 6 3.4492 1.1936 -2.0224 27 1 -0.3633 0.6096 -0.8273 28 1 -0.3632 -1.0213 -0.1141 29 1 -0.3633 0.4118 0.9416 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.1932 0.5079 2.6265 33 1 0.5806 1.2150 2.3659 34 1 1.3353 3.3273 3.4223 35 1 2.9481 2.6207 3.6833 36 1 3.1677 0.7861 5.5311 37 1 -0.4045 0.6664 7.7117 38 1 0.2550 2.1380 -1.7403 39 1 1.3308 2.7816 -3.0239 40 1 0.6083 -0.0729 -2.3851 41 1 1.0616 0.6546 -3.9517 42 1 0.4975 -2.3190 -4.4089 43 1 3.9697 1.8154 -2.7507 44 1 4.1590 0.7531 -1.3222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753458244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:15 Heat of formation + Delta-G solvation = 41.574918 kcal Electronic energy + Delta-G solvation = -25714.399350 eV Core-core repulsion = 22180.727451 eV Total energy + Delta-G solvation = -3533.671899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15505 -39.72687 -37.66078 -34.65363 -34.26451 -32.36546 -30.31579 -29.67097 -29.14633 -27.12357 -25.99698 -24.54167 -23.66881 -22.64363 -20.60760 -20.17830 -20.10746 -18.45783 -18.28378 -17.05295 -16.99059 -15.92689 -15.80644 -15.13622 -14.74017 -14.63779 -14.20003 -14.06488 -13.89640 -13.83197 -13.32198 -13.17089 -12.72077 -12.45181 -12.14847 -12.10797 -11.94723 -11.87817 -11.81268 -11.20717 -11.12729 -10.99956 -10.90130 -10.72133 -10.48867 -10.21296 -10.16928 -9.94779 -9.88545 -9.70284 -9.55340 -9.34799 -9.10717 -8.71161 -8.22566 -6.87229 -5.79585 -3.13833 0.46666 1.11873 1.51804 2.60982 2.86391 3.34153 3.35903 3.41046 3.41181 4.11576 4.43131 4.51213 4.81899 4.91436 5.01779 5.06142 5.24683 5.33630 5.35406 5.40829 5.47846 5.58974 5.68553 5.75088 5.80028 5.86544 5.88561 5.94859 5.97769 6.18452 6.20181 6.31043 6.46819 6.51397 6.59391 6.70204 6.79766 7.12494 7.45826 7.49617 7.55049 7.75636 7.85651 8.16664 8.46223 9.13721 9.73038 10.38482 11.31009 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.003043 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.820681 B = 9198.286973 C = 9828.302423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.080 3.920 3 N -0.582 5.582 4 C 0.512 3.488 5 O -0.558 6.558 6 C -0.136 4.136 7 C -0.027 4.027 8 C -0.206 4.206 9 C 0.028 3.972 10 N -0.470 5.470 11 C 0.010 3.990 12 S 0.119 5.881 13 C 0.123 3.877 14 H 0.099 0.901 15 C -0.158 4.158 16 C 0.168 3.832 17 N -0.602 5.602 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.004 4.004 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.124 3.876 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.176 0.824 37 H 0.197 0.803 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.253 0.747 43 H 0.030 0.970 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 6.532 16.640 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.042 4.042 3 N -0.313 5.313 4 C 0.300 3.700 5 O -0.437 6.437 6 C -0.176 4.176 7 C -0.067 4.067 8 C -0.327 4.327 9 C -0.122 4.122 10 N -0.183 5.183 11 C -0.288 4.288 12 S 0.371 5.629 13 C 0.019 3.981 14 H 0.117 0.883 15 C -0.197 4.197 16 C 0.044 3.956 17 N -0.329 5.329 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.201 4.201 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.002 4.002 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.157 0.843 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.193 0.807 37 H 0.214 0.786 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.048 0.952 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.675 7.023 16.683 18.695 hybrid contribution 1.025 -1.307 -0.471 1.726 sum -3.650 5.717 16.212 17.574 Atomic orbital electron populations 1.22295 0.96436 1.02621 1.01100 1.22144 0.94199 0.81874 1.06010 1.47847 1.63286 1.14386 1.05786 1.20487 0.78572 0.85637 0.85265 1.90650 1.45920 1.20326 1.86833 1.21768 1.03672 1.00047 0.92142 1.19806 1.02922 0.97412 0.86598 1.26109 0.96132 1.06729 1.03716 1.21810 1.01934 0.98328 0.90163 1.66318 1.06854 1.22718 1.22373 1.28353 0.95695 1.01698 1.03011 1.84132 1.12410 1.48666 1.17648 1.22233 0.96329 0.96852 0.82725 0.88336 1.23304 0.97408 1.01078 0.97912 1.21364 0.86782 0.88707 0.98727 1.44599 1.06508 1.13766 1.68018 1.18992 0.95041 0.89851 1.32254 0.90515 1.24774 0.95905 0.98613 1.00758 1.69946 1.04307 1.35309 1.47012 0.86231 0.77625 0.83603 0.78470 1.21145 1.21617 1.21234 1.21908 0.93380 0.90963 0.93992 0.91367 0.91632 0.94114 0.84338 0.92262 0.88657 0.88675 0.89678 0.88768 0.80677 0.78611 0.91735 0.91519 0.92228 0.94127 0.93644 0.95229 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.13 37.16 0.34 -2.14 16 2 C 0.08 1.31 4.87 -4.04 -0.02 1.29 16 3 N -0.58 -9.57 2.53 -163.67 -0.41 -9.98 16 4 C 0.51 7.91 7.62 -10.99 -0.08 7.82 16 5 O -0.56 -10.05 15.37 5.55 0.09 -9.97 16 6 C -0.14 -1.58 4.36 -27.88 -0.12 -1.70 16 7 C -0.03 -0.29 5.04 -27.88 -0.14 -0.43 16 8 C -0.21 -2.05 5.85 -35.92 -0.21 -2.26 16 9 C 0.03 0.29 11.25 -19.19 -0.22 0.08 16 10 N -0.47 -5.22 10.54 -15.75 -0.17 -5.39 16 11 C 0.01 0.09 12.23 51.59 0.63 0.72 16 12 S 0.12 1.01 23.22 -107.50 -2.50 -1.48 16 13 C 0.12 2.19 3.67 -65.78 -0.24 1.95 16 14 H 0.10 1.75 7.02 -51.93 -0.36 1.39 16 15 C -0.16 -2.85 6.00 -24.90 -0.15 -3.00 16 16 C 0.17 3.74 4.17 -3.06 -0.01 3.73 16 17 N -0.60 -14.07 1.91 -170.07 -0.32 -14.39 16 18 C -0.23 -6.04 9.90 -15.05 -0.15 -6.19 16 19 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 20 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -25.05 10.31 55.49 0.57 -24.48 16 22 Si 0.91 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.12 2.49 6.54 -2.53 -0.02 2.48 16 27 H 0.07 1.10 4.92 -51.93 -0.26 0.85 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.51 6.25 -51.93 -0.32 0.18 16 30 H 0.14 2.86 4.28 -51.93 -0.22 2.64 16 31 H 0.06 0.86 6.74 -51.93 -0.35 0.51 16 32 H 0.10 1.04 7.30 -51.93 -0.38 0.66 16 33 H 0.10 1.04 6.27 -51.93 -0.33 0.71 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.06 1.09 6.60 -51.93 -0.34 0.75 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.39 4.64 -51.93 -0.24 1.15 16 41 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 42 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -29.60 353.41 -9.04 -38.64 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.12 Total: 3.52 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.49 Total: 2.16 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.33 Total: -54.24 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.60 -9.04 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753458244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.218 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds