Wall clock time and date at job start Tue Mar 31 2020 13:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.47087 * 2 1 4 4 C 1.34778 * 119.99968 * 83.96558 * 3 2 1 5 5 O 1.21285 * 120.00184 * 175.19032 * 4 3 2 6 6 C 1.50695 * 120.00014 * 355.19235 * 4 3 2 7 7 C 1.53006 * 109.47204 * 180.02562 * 6 4 3 8 8 C 1.50695 * 109.47204 * 180.02562 * 7 6 4 9 9 C 1.33646 * 126.04070 * 89.99695 * 8 7 6 10 10 N 1.31771 * 114.50271 * 179.76869 * 9 8 7 11 11 C 1.29032 * 117.12776 * 0.22819 * 10 9 8 12 12 S 1.70977 * 110.16491 * 0.02562 * 11 10 9 13 13 C 1.46497 * 120.00045 * 263.96582 * 3 2 1 14 14 H 1.09002 * 110.88850 * 180.61820 * 13 3 2 15 15 C 1.55158 * 111.00366 * 56.74314 * 13 3 2 16 16 C 1.54324 * 102.94146 * 277.42725 * 15 13 3 17 17 N 1.47024 * 107.26983 * 337.80897 * 16 15 13 18 18 C 1.36937 * 125.64930 * 178.99012 * 17 16 15 19 19 H 1.07996 * 120.00545 * 179.97438 * 18 17 16 20 20 C 1.38823 * 119.99765 * 359.96932 * 18 17 16 21 21 N 1.31613 * 120.00033 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99711 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47617 * 59.99900 * 22 20 18 24 24 H 1.48502 * 109.47167 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47186 * 299.99842 * 22 20 18 26 26 C 1.47427 * 108.70383 * 358.93585 * 17 16 15 27 27 H 1.08999 * 109.47150 * 53.61813 * 1 2 3 28 28 H 1.08994 * 109.46679 * 173.62252 * 1 2 3 29 29 H 1.09003 * 109.46938 * 293.61992 * 1 2 3 30 30 H 1.08995 * 109.47125 * 239.99889 * 2 1 3 31 31 H 1.09002 * 109.47178 * 119.99678 * 2 1 3 32 32 H 1.08998 * 109.47317 * 59.99893 * 6 4 3 33 33 H 1.09004 * 109.47107 * 299.99749 * 6 4 3 34 34 H 1.08998 * 109.47266 * 59.99623 * 7 6 4 35 35 H 1.09004 * 109.46688 * 299.99766 * 7 6 4 36 36 H 1.08001 * 122.74256 * 0.03957 * 9 8 7 37 37 H 1.07999 * 124.92061 * 179.97438 * 11 10 9 38 38 H 1.08997 * 110.72172 * 35.79022 * 15 13 3 39 39 H 1.09004 * 110.72070 * 159.06539 * 15 13 3 40 40 H 1.09005 * 109.88571 * 97.22232 * 16 15 13 41 41 H 1.08998 * 109.88256 * 218.38942 * 16 15 13 42 42 H 0.97003 * 120.00172 * 179.97438 * 21 20 18 43 43 H 1.08994 * 110.36750 * 265.28857 * 26 17 16 44 44 H 1.09006 * 110.36208 * 142.96721 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1273 2.0575 1.1607 5 8 2.6129 3.1688 1.1719 6 6 1.6458 1.4327 2.4448 7 6 1.8830 2.4026 3.6042 8 6 1.4021 1.7776 4.8883 9 6 2.1304 1.0228 5.7165 10 7 1.4809 0.5959 6.7806 11 6 0.2438 0.9447 6.8939 12 16 -0.2209 1.9099 5.5614 13 6 2.3883 2.0274 -1.2617 14 1 2.7402 3.0444 -1.0889 15 6 1.2031 2.0117 -2.2629 16 6 1.2981 0.6043 -2.8889 17 7 2.6802 0.1375 -2.7057 18 6 3.1721 -1.0765 -3.1048 19 1 4.2071 -1.3259 -2.9237 20 6 2.3401 -1.9869 -3.7421 21 7 1.0788 -1.6830 -3.9632 22 14 3.0109 -3.6433 -4.2858 23 1 3.5155 -4.3856 -3.1029 24 1 1.9297 -4.4255 -4.9374 25 1 4.1208 -3.4355 -5.2502 26 6 3.4492 1.1936 -2.0224 27 1 -0.3633 0.6096 -0.8273 28 1 -0.3632 -1.0213 -0.1141 29 1 -0.3633 0.4118 0.9416 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.1932 0.5079 2.6265 33 1 0.5806 1.2150 2.3659 34 1 1.3353 3.3273 3.4223 35 1 2.9481 2.6207 3.6833 36 1 3.1677 0.7861 5.5311 37 1 -0.4045 0.6664 7.7117 38 1 0.2550 2.1380 -1.7403 39 1 1.3308 2.7816 -3.0239 40 1 0.6083 -0.0729 -2.3851 41 1 1.0616 0.6546 -3.9517 42 1 0.4975 -2.3190 -4.4089 43 1 3.9697 1.8154 -2.7507 44 1 4.1590 0.7531 -1.3222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753458244.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:14 Heat of formation + Delta-G solvation = 25.585127 kcal Electronic energy + Delta-G solvation = -25715.092720 eV Core-core repulsion = 22180.727451 eV Total energy + Delta-G solvation = -3534.365268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.42112 -40.53035 -39.14755 -36.13153 -35.23851 -34.10072 -31.75379 -31.08375 -30.31183 -28.62767 -26.94923 -26.29674 -24.62471 -23.88620 -21.96217 -21.85355 -20.92884 -19.75181 -19.07786 -18.86726 -18.25491 -17.16576 -16.81706 -16.65024 -16.12801 -15.70536 -15.60414 -15.31697 -15.04984 -14.80902 -14.55032 -14.36918 -13.95710 -13.78376 -13.65532 -13.46100 -13.27788 -13.13765 -12.86943 -12.80178 -12.69413 -12.51018 -12.18713 -12.08588 -12.03144 -11.86068 -11.75342 -11.53059 -11.47396 -10.75083 -10.65299 -10.57213 -10.16962 -9.84884 -9.63559 -8.76251 -7.80137 -5.14691 -0.22354 0.45147 0.83669 1.50210 1.51239 1.57318 1.64344 1.86829 2.09740 2.52344 3.38329 3.40961 3.57959 3.69616 3.91215 3.96612 4.00823 4.05145 4.14895 4.24982 4.35146 4.38363 4.46213 4.54190 4.60052 4.66801 4.72159 4.77625 4.89979 4.94725 4.99718 5.05582 5.06291 5.08699 5.23679 5.33226 5.44600 5.51686 5.72029 5.74372 5.86931 6.23986 6.57523 6.77027 7.15290 7.20757 7.80230 8.44887 9.28603 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.003043 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.820681 B = 9198.286973 C = 9828.302423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.086 3.914 3 N -0.585 5.585 4 C 0.513 3.487 5 O -0.583 6.583 6 C -0.127 4.127 7 C -0.018 4.018 8 C -0.220 4.220 9 C 0.021 3.979 10 N -0.503 5.503 11 C 0.014 3.986 12 S 0.147 5.853 13 C 0.134 3.866 14 H 0.105 0.895 15 C -0.144 4.144 16 C 0.180 3.820 17 N -0.613 5.613 18 C -0.240 4.240 19 H 0.076 0.924 20 C -0.052 4.052 21 N -0.941 5.941 22 Si 0.969 3.031 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.285 1.285 26 C 0.124 3.876 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.182 0.818 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.000 1.000 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 6.718 18.576 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.037 4.037 3 N -0.316 5.316 4 C 0.303 3.697 5 O -0.464 6.464 6 C -0.167 4.167 7 C -0.058 4.058 8 C -0.341 4.341 9 C -0.130 4.130 10 N -0.217 5.217 11 C -0.283 4.283 12 S 0.399 5.601 13 C 0.029 3.971 14 H 0.123 0.877 15 C -0.183 4.183 16 C 0.056 3.944 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.094 0.906 20 C -0.246 4.246 21 N -0.589 5.589 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.212 1.212 26 C -0.002 4.002 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.199 0.801 37 H 0.243 0.757 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.168 7.225 18.639 20.648 hybrid contribution 1.194 -1.328 -1.023 2.058 sum -3.974 5.897 17.616 18.997 Atomic orbital electron populations 1.22197 0.95219 1.02281 1.01957 1.21983 0.95144 0.81558 1.05007 1.47878 1.63539 1.14476 1.05710 1.21078 0.77630 0.85195 0.85794 1.90642 1.47001 1.21583 1.87200 1.21759 1.04361 1.00360 0.90196 1.19654 1.02676 0.96942 0.86572 1.26013 0.97223 1.07248 1.03612 1.21991 1.02457 0.98333 0.90202 1.66366 1.08048 1.24168 1.23091 1.28918 0.95337 1.00431 1.03566 1.84042 1.10976 1.48009 1.17049 1.22032 0.95168 0.96680 0.83244 0.87699 1.23169 0.98385 0.98568 0.98135 1.21117 0.86125 0.90864 0.96323 1.44730 1.07345 1.13816 1.68115 1.19259 0.95078 0.90957 1.31604 0.90568 1.25431 0.96249 1.01479 1.01437 1.70131 1.05124 1.35834 1.47822 0.85308 0.76674 0.80188 0.78037 1.20316 1.22225 1.21189 1.21991 0.93816 0.90448 0.93978 0.92942 0.92074 0.91221 0.88409 0.90117 0.87472 0.87334 0.90118 0.89264 0.80107 0.75710 0.90224 0.90420 0.93560 0.98189 0.94416 0.94988 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.46 9.13 71.98 0.66 -3.81 16 2 C 0.09 2.70 4.87 86.38 0.42 3.12 16 3 N -0.59 -18.36 2.53 -790.13 -2.00 -20.36 16 4 C 0.51 14.81 7.62 87.66 0.67 15.48 16 5 O -0.58 -20.08 15.37 -3.05 -0.05 -20.12 16 6 C -0.13 -2.62 4.36 29.85 0.13 -2.49 16 7 C -0.02 -0.35 5.04 29.85 0.15 -0.20 16 8 C -0.22 -3.92 5.85 24.64 0.14 -3.78 16 9 C 0.02 0.40 11.25 83.66 0.94 1.34 16 10 N -0.50 -10.24 10.54 -203.74 -2.15 -12.39 16 11 C 0.01 0.21 12.23 130.65 1.60 1.81 16 12 S 0.15 2.10 23.22 -56.49 -1.31 0.79 16 13 C 0.13 4.63 3.67 46.38 0.17 4.80 16 14 H 0.11 3.57 7.02 -2.39 -0.02 3.55 16 15 C -0.14 -5.08 6.00 31.78 0.19 -4.89 16 16 C 0.18 8.16 4.17 86.73 0.36 8.52 16 17 N -0.61 -29.07 1.91 -691.97 -1.32 -30.39 16 18 C -0.24 -12.59 9.90 84.04 0.83 -11.76 16 19 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.05 -2.77 5.49 84.87 0.47 -2.30 16 21 N -0.94 -52.55 10.31 21.65 0.22 -52.32 16 22 Si 0.97 43.71 29.55 68.60 2.03 45.74 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 26 C 0.12 4.94 6.54 86.85 0.57 5.51 16 27 H 0.05 1.64 4.92 -2.39 -0.01 1.63 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.53 6.25 -2.39 -0.01 1.52 16 30 H 0.10 4.03 4.28 -2.39 -0.01 4.02 16 31 H 0.08 2.17 6.74 -2.39 -0.02 2.15 16 32 H 0.11 2.02 7.30 -2.39 -0.02 2.00 16 33 H 0.11 1.99 6.27 -2.38 -0.01 1.97 16 34 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 35 H 0.09 1.80 8.10 -2.38 -0.02 1.78 16 36 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.23 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.08 2.59 6.60 -2.39 -0.02 2.57 16 39 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.05 2.22 4.64 -2.38 -0.01 2.20 16 41 H 0.00 -0.01 7.50 -2.39 -0.02 -0.03 16 42 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -64.16 353.41 3.74 -60.42 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.02 Total: 17.28 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 7.30 Total: 11.35 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -5.24 Total: -115.46 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.31 Total: 0.79 kcal Total: -64.16 3.74 -60.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753458244.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.004 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds