Wall clock time and date at job start Tue Mar 31 2020 13:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46988 * 2 1 4 4 C 1.34769 * 120.00250 * 89.99925 * 3 2 1 5 5 O 1.21286 * 120.00348 * 179.97438 * 4 3 2 6 6 C 1.50693 * 120.00096 * 359.97438 * 4 3 2 7 7 C 1.52998 * 109.47570 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47473 * 179.97438 * 7 6 4 9 9 C 1.33639 * 126.03685 * 90.02647 * 8 7 6 10 10 N 1.31784 * 114.50365 * 179.97438 * 9 8 7 11 11 C 1.29030 * 117.12210 * 0.02562 * 10 9 8 12 12 S 1.70977 * 110.16623 * 359.97438 * 11 10 9 13 13 C 1.46510 * 119.99770 * 269.99567 * 3 2 1 14 14 H 1.08997 * 110.64251 * 1.69367 * 13 3 2 15 15 C 1.55160 * 110.71583 * 125.02403 * 13 3 2 16 16 C 1.54909 * 101.57744 * 153.86744 * 15 13 3 17 17 N 1.47425 * 104.83534 * 322.98808 * 16 15 13 18 18 C 1.36935 * 125.65310 * 204.09576 * 17 16 15 19 19 H 1.08003 * 120.00054 * 169.98600 * 18 17 16 20 20 C 1.38812 * 119.99679 * 349.98344 * 18 17 16 21 21 N 1.31614 * 120.00107 * 350.42468 * 20 18 17 22 22 Si 1.86800 * 119.99770 * 170.42124 * 20 18 17 23 23 H 1.48499 * 109.47262 * 94.14004 * 22 20 18 24 24 H 1.48501 * 109.47460 * 214.14140 * 22 20 18 25 25 H 1.48502 * 109.47190 * 334.14504 * 22 20 18 26 26 C 1.47028 * 108.69963 * 24.13324 * 17 16 15 27 27 H 1.08991 * 109.47039 * 300.00263 * 1 2 3 28 28 H 1.09004 * 109.47040 * 60.00137 * 1 2 3 29 29 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47334 * 239.99579 * 2 1 3 31 31 H 1.08994 * 109.47073 * 119.99868 * 2 1 3 32 32 H 1.09007 * 109.47417 * 59.99950 * 6 4 3 33 33 H 1.09007 * 109.47222 * 300.00051 * 6 4 3 34 34 H 1.09001 * 109.47010 * 59.99915 * 7 6 4 35 35 H 1.08997 * 109.47131 * 300.00331 * 7 6 4 36 36 H 1.08001 * 122.74681 * 0.02562 * 9 8 7 37 37 H 1.07996 * 124.91685 * 180.02562 * 11 10 9 38 38 H 1.09001 * 111.00736 * 271.93806 * 15 13 3 39 39 H 1.08997 * 111.00313 * 35.79242 * 15 13 3 40 40 H 1.09003 * 110.36670 * 204.15034 * 16 15 13 41 41 H 1.08998 * 110.46332 * 81.87609 * 16 15 13 42 42 H 0.96999 * 119.99745 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.87672 * 239.52518 * 26 17 16 44 44 H 1.08997 * 110.01266 * 118.42843 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.6476 3.1599 1.1671 6 6 1.9912 1.3065 2.4722 7 6 2.3233 2.2436 3.6351 8 6 2.0710 1.5337 4.9402 9 6 2.9580 0.8024 5.6217 10 7 2.4936 0.2825 6.7401 11 6 1.2641 0.5342 7.0397 12 16 0.5547 1.5214 5.8375 13 6 2.2626 2.0718 -1.2688 14 1 2.0039 1.4305 -2.1114 15 6 1.4739 3.4067 -1.3278 16 6 2.3403 4.2366 -2.3079 17 7 3.7310 3.8645 -1.9902 18 6 4.8386 4.6309 -2.2371 19 1 5.7952 4.3462 -1.8246 20 6 4.7318 5.7737 -3.0178 21 7 3.6179 6.0207 -3.6739 22 14 6.1689 6.9611 -3.1369 23 1 6.9876 6.6292 -4.3305 24 1 5.6555 8.3491 -3.2592 25 1 7.0063 6.8488 -1.9156 26 6 3.7319 2.5337 -1.3651 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.6211 0.4187 2.5302 33 1 0.9431 1.0127 2.5298 34 1 1.6938 3.1315 3.5773 35 1 3.3715 2.5370 3.5774 36 1 3.9726 0.6506 5.2839 37 1 0.7568 0.1741 7.9225 38 1 0.4719 3.2513 -1.7277 39 1 1.4323 3.8796 -0.3466 40 1 2.1855 5.3027 -2.1417 41 1 2.1041 3.9760 -3.3396 42 1 3.5434 6.8192 -4.2197 43 1 4.1679 2.5929 -0.3679 44 1 4.3009 1.8343 -1.9775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753458245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:18 Heat of formation + Delta-G solvation = 40.764632 kcal Electronic energy + Delta-G solvation = -25370.746826 eV Core-core repulsion = 21837.039790 eV Total energy + Delta-G solvation = -3533.707035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23779 -39.76897 -36.93352 -35.49930 -34.27985 -32.30808 -30.31346 -29.76495 -28.85485 -27.21399 -25.96685 -24.43207 -23.76645 -22.91062 -20.81005 -20.23102 -20.12521 -18.51929 -18.23119 -16.95194 -16.77938 -16.03146 -15.72313 -15.19402 -14.78501 -14.54722 -14.26543 -14.19888 -13.92363 -13.80994 -13.50219 -13.20260 -12.94738 -12.66165 -12.44285 -12.13373 -11.99452 -11.86888 -11.70694 -11.48183 -11.29974 -11.01921 -10.81975 -10.75798 -10.73417 -10.43205 -9.99589 -9.92626 -9.85123 -9.57721 -9.55013 -9.25291 -9.01281 -8.48521 -8.29889 -6.65904 -5.63894 -2.94317 0.42947 1.08146 1.48224 2.56948 2.87743 3.14580 3.46456 3.52076 3.55297 4.07169 4.39611 4.60415 4.75491 4.78241 4.84842 4.97780 5.00425 5.07750 5.19409 5.29911 5.35439 5.47374 5.57869 5.59336 5.62499 5.65971 5.79984 5.83456 5.85392 5.93014 5.96778 6.06566 6.31644 6.58494 6.60946 6.68091 6.80679 7.23031 7.41903 7.60890 7.63678 7.72025 7.88840 8.37554 8.48233 9.30934 9.93184 10.61234 11.49591 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.002989 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.090417 B = 9366.289723 C =10393.024374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.606 5.606 4 C 0.506 3.494 5 O -0.508 6.508 6 C -0.134 4.134 7 C -0.030 4.030 8 C -0.204 4.204 9 C 0.027 3.973 10 N -0.470 5.470 11 C 0.009 3.991 12 S 0.119 5.881 13 C 0.136 3.864 14 H 0.087 0.913 15 C -0.157 4.157 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.219 4.219 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.134 3.866 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.177 0.823 37 H 0.197 0.803 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.251 0.749 43 H 0.035 0.965 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.263 -15.500 16.577 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.340 5.340 4 C 0.293 3.707 5 O -0.382 6.382 6 C -0.175 4.175 7 C -0.070 4.070 8 C -0.325 4.325 9 C -0.123 4.123 10 N -0.183 5.183 11 C -0.288 4.288 12 S 0.371 5.629 13 C 0.033 3.967 14 H 0.105 0.895 15 C -0.196 4.196 16 C 0.054 3.946 17 N -0.321 5.321 18 C -0.347 4.347 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.007 3.993 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.194 0.806 37 H 0.214 0.786 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -10.657 -14.619 16.745 24.652 hybrid contribution 1.459 0.247 -0.378 1.528 sum -9.197 -14.372 16.368 23.644 Atomic orbital electron populations 1.22228 0.96051 1.01924 1.02759 1.21557 0.94365 0.82938 1.03071 1.48032 1.66015 1.13706 1.06202 1.20418 0.78266 0.87080 0.84934 1.90822 1.43336 1.17146 1.86942 1.21754 1.03671 0.99724 0.92333 1.19825 1.04629 0.96714 0.85867 1.26114 0.96005 1.06758 1.03615 1.21824 1.01705 0.97847 0.90943 1.66329 1.12266 1.22596 1.17069 1.28351 0.93990 1.02239 1.04267 1.84147 1.14923 1.47479 1.16379 1.22166 0.97451 0.93766 0.83339 0.89451 1.23414 0.97472 0.95913 1.02798 1.21300 0.82082 0.98063 0.93163 1.44250 1.03008 1.14063 1.70752 1.18990 0.87612 1.03486 1.24661 0.90911 1.24777 0.97576 0.99534 0.98713 1.69954 1.25847 1.27642 1.33412 0.86140 0.81521 0.80746 0.77607 1.21765 1.21683 1.20663 1.21474 0.92589 0.88362 0.96838 0.92575 0.91948 0.91761 0.90273 0.90658 0.88902 0.89149 0.89459 0.88474 0.80649 0.78630 0.92931 0.89945 0.91387 0.95861 0.93878 0.94697 0.96706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.10 0.98 5.91 -4.04 -0.02 0.95 16 3 N -0.61 -8.45 2.54 -164.03 -0.42 -8.86 16 4 C 0.51 7.50 6.78 -10.99 -0.07 7.42 16 5 O -0.51 -10.04 12.33 5.55 0.07 -9.97 16 6 C -0.13 -1.36 4.23 -27.89 -0.12 -1.48 16 7 C -0.03 -0.32 5.04 -27.89 -0.14 -0.46 16 8 C -0.20 -1.94 5.85 -35.92 -0.21 -2.15 16 9 C 0.03 0.27 11.25 -19.18 -0.22 0.05 16 10 N -0.47 -4.94 10.54 -15.75 -0.17 -5.11 16 11 C 0.01 0.07 12.23 51.59 0.63 0.70 16 12 S 0.12 0.94 23.22 -107.50 -2.50 -1.55 16 13 C 0.14 2.41 3.44 -66.09 -0.23 2.18 16 14 H 0.09 1.40 7.88 -51.93 -0.41 0.99 16 15 C -0.16 -3.15 6.40 -24.58 -0.16 -3.31 16 16 C 0.18 4.56 5.42 -2.53 -0.01 4.55 16 17 N -0.59 -16.11 3.39 -170.07 -0.58 -16.69 16 18 C -0.22 -6.45 10.24 -15.06 -0.15 -6.61 16 19 H 0.07 2.10 7.85 -52.48 -0.41 1.69 16 20 C -0.01 -0.29 5.40 -17.43 -0.09 -0.39 16 21 N -0.92 -28.01 10.68 55.49 0.59 -27.42 16 22 Si 0.91 23.02 29.56 -169.99 -5.03 18.00 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.13 2.99 6.49 -3.06 -0.02 2.97 16 27 H 0.06 0.47 7.22 -51.93 -0.37 0.09 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 31 H 0.08 0.56 6.44 -51.93 -0.33 0.22 16 32 H 0.09 0.79 7.40 -51.93 -0.38 0.41 16 33 H 0.09 0.77 7.18 -51.92 -0.37 0.40 16 34 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.18 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.20 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.79 5.81 -51.93 -0.30 1.49 16 40 H 0.07 1.95 6.94 -51.93 -0.36 1.59 16 41 H 0.02 0.63 8.07 -51.93 -0.42 0.21 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.04 0.82 6.28 -51.93 -0.33 0.50 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -35.20 364.73 -9.58 -44.78 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -6.62 Total: -2.09 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.44 Total: 3.42 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.57 Total: -58.08 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.03 Total: 18.00 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.20 -9.58 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753458245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.548 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds