Wall clock time and date at job start Tue Mar 31 2020 13:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46988 * 2 1 4 4 C 1.34769 * 120.00250 * 89.99925 * 3 2 1 5 5 O 1.21286 * 120.00348 * 179.97438 * 4 3 2 6 6 C 1.50693 * 120.00096 * 359.97438 * 4 3 2 7 7 C 1.52998 * 109.47570 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47473 * 179.97438 * 7 6 4 9 9 C 1.33639 * 126.03685 * 90.02647 * 8 7 6 10 10 N 1.31784 * 114.50365 * 179.97438 * 9 8 7 11 11 C 1.29030 * 117.12210 * 0.02562 * 10 9 8 12 12 S 1.70977 * 110.16623 * 359.97438 * 11 10 9 13 13 C 1.46510 * 119.99770 * 269.99567 * 3 2 1 14 14 H 1.08997 * 110.64251 * 1.69367 * 13 3 2 15 15 C 1.55160 * 110.71583 * 125.02403 * 13 3 2 16 16 C 1.54909 * 101.57744 * 153.86744 * 15 13 3 17 17 N 1.47425 * 104.83534 * 322.98808 * 16 15 13 18 18 C 1.36935 * 125.65310 * 204.09576 * 17 16 15 19 19 H 1.08003 * 120.00054 * 169.98600 * 18 17 16 20 20 C 1.38812 * 119.99679 * 349.98344 * 18 17 16 21 21 N 1.31614 * 120.00107 * 350.42468 * 20 18 17 22 22 Si 1.86800 * 119.99770 * 170.42124 * 20 18 17 23 23 H 1.48499 * 109.47262 * 94.14004 * 22 20 18 24 24 H 1.48501 * 109.47460 * 214.14140 * 22 20 18 25 25 H 1.48502 * 109.47190 * 334.14504 * 22 20 18 26 26 C 1.47028 * 108.69963 * 24.13324 * 17 16 15 27 27 H 1.08991 * 109.47039 * 300.00263 * 1 2 3 28 28 H 1.09004 * 109.47040 * 60.00137 * 1 2 3 29 29 H 1.09003 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47334 * 239.99579 * 2 1 3 31 31 H 1.08994 * 109.47073 * 119.99868 * 2 1 3 32 32 H 1.09007 * 109.47417 * 59.99950 * 6 4 3 33 33 H 1.09007 * 109.47222 * 300.00051 * 6 4 3 34 34 H 1.09001 * 109.47010 * 59.99915 * 7 6 4 35 35 H 1.08997 * 109.47131 * 300.00331 * 7 6 4 36 36 H 1.08001 * 122.74681 * 0.02562 * 9 8 7 37 37 H 1.07996 * 124.91685 * 180.02562 * 11 10 9 38 38 H 1.09001 * 111.00736 * 271.93806 * 15 13 3 39 39 H 1.08997 * 111.00313 * 35.79242 * 15 13 3 40 40 H 1.09003 * 110.36670 * 204.15034 * 16 15 13 41 41 H 1.08998 * 110.46332 * 81.87609 * 16 15 13 42 42 H 0.96999 * 119.99745 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.87672 * 239.52518 * 26 17 16 44 44 H 1.08997 * 110.01266 * 118.42843 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1671 5 8 2.6476 3.1599 1.1671 6 6 1.9912 1.3065 2.4722 7 6 2.3233 2.2436 3.6351 8 6 2.0710 1.5337 4.9402 9 6 2.9580 0.8024 5.6217 10 7 2.4936 0.2825 6.7401 11 6 1.2641 0.5342 7.0397 12 16 0.5547 1.5214 5.8375 13 6 2.2626 2.0718 -1.2688 14 1 2.0039 1.4305 -2.1114 15 6 1.4739 3.4067 -1.3278 16 6 2.3403 4.2366 -2.3079 17 7 3.7310 3.8645 -1.9902 18 6 4.8386 4.6309 -2.2371 19 1 5.7952 4.3462 -1.8246 20 6 4.7318 5.7737 -3.0178 21 7 3.6179 6.0207 -3.6739 22 14 6.1689 6.9611 -3.1369 23 1 6.9876 6.6292 -4.3305 24 1 5.6555 8.3491 -3.2592 25 1 7.0063 6.8488 -1.9156 26 6 3.7319 2.5337 -1.3651 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.6211 0.4187 2.5302 33 1 0.9431 1.0127 2.5298 34 1 1.6938 3.1315 3.5773 35 1 3.3715 2.5370 3.5774 36 1 3.9726 0.6506 5.2839 37 1 0.7568 0.1741 7.9225 38 1 0.4719 3.2513 -1.7277 39 1 1.4323 3.8796 -0.3466 40 1 2.1855 5.3027 -2.1417 41 1 2.1041 3.9760 -3.3396 42 1 3.5434 6.8192 -4.2197 43 1 4.1679 2.5929 -0.3679 44 1 4.3009 1.8343 -1.9775 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753458245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:17 Heat of formation + Delta-G solvation = 18.049139 kcal Electronic energy + Delta-G solvation = -25371.731843 eV Core-core repulsion = 21837.039790 eV Total energy + Delta-G solvation = -3534.692053 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41774 -40.52663 -38.58468 -36.73484 -35.24776 -34.21231 -31.63215 -30.82702 -30.36219 -28.72723 -27.02391 -26.19958 -24.67329 -23.78307 -22.20854 -22.12341 -20.93627 -19.64504 -19.02853 -18.86234 -17.95818 -17.18957 -16.76483 -16.69738 -16.16117 -15.85090 -15.59123 -15.20716 -14.90070 -14.76061 -14.60084 -14.42779 -14.26054 -13.96692 -13.61295 -13.47586 -13.27864 -13.14117 -12.88530 -12.74606 -12.66926 -12.59746 -12.28502 -12.12227 -12.07535 -12.01648 -11.84703 -11.76630 -11.47704 -10.68796 -10.60582 -10.48350 -10.15478 -9.85119 -9.55472 -8.83629 -7.88786 -5.21891 -0.22746 0.44100 0.83426 1.41896 1.44928 1.54505 1.74534 1.85922 2.05252 2.49434 3.29544 3.40421 3.58407 3.74765 3.90181 3.93747 3.98548 4.03041 4.13968 4.25324 4.32220 4.39085 4.45212 4.52479 4.60099 4.61731 4.70888 4.75103 4.90605 4.97674 5.00602 5.04155 5.06934 5.07175 5.17167 5.23268 5.41905 5.45475 5.61034 5.68160 5.81769 6.20200 6.55813 6.76325 7.08000 7.34823 7.76454 8.43193 9.23365 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.002989 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.090417 B = 9366.289723 C =10393.024374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 N -0.602 5.602 4 C 0.500 3.500 5 O -0.567 6.567 6 C -0.119 4.119 7 C -0.023 4.023 8 C -0.218 4.218 9 C 0.022 3.978 10 N -0.502 5.502 11 C 0.016 3.984 12 S 0.147 5.853 13 C 0.154 3.846 14 H 0.114 0.886 15 C -0.140 4.140 16 C 0.186 3.814 17 N -0.618 5.618 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.978 3.022 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.274 1.274 26 C 0.132 3.868 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.181 0.819 37 H 0.228 0.772 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.024 0.976 41 H 0.005 0.995 42 H 0.248 0.752 43 H 0.020 0.980 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 -18.005 17.961 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.289 3.711 5 O -0.445 6.445 6 C -0.159 4.159 7 C -0.064 4.064 8 C -0.340 4.340 9 C -0.129 4.129 10 N -0.215 5.215 11 C -0.281 4.281 12 S 0.400 5.600 13 C 0.049 3.951 14 H 0.132 0.868 15 C -0.179 4.179 16 C 0.060 3.940 17 N -0.344 5.344 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.258 4.258 21 N -0.596 5.596 22 Si 0.806 3.194 23 H -0.207 1.207 24 H -0.217 1.217 25 H -0.199 1.199 26 C 0.006 3.994 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.198 0.802 37 H 0.244 0.756 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.038 0.962 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -11.773 -17.194 18.145 27.631 hybrid contribution 1.768 0.992 -0.743 2.159 sum -10.005 -16.202 17.402 25.796 Atomic orbital electron populations 1.22195 0.94819 1.03426 1.02098 1.21935 0.95300 0.80103 1.05073 1.48098 1.65550 1.15349 1.04454 1.21264 0.76807 0.86529 0.86456 1.90807 1.45963 1.19932 1.87832 1.21717 1.05596 0.99563 0.89036 1.19632 1.03260 0.96503 0.86974 1.25943 0.97260 1.07275 1.03476 1.21968 1.02109 0.97802 0.90983 1.66382 1.13541 1.23988 1.17619 1.28935 0.93394 1.00925 1.04816 1.84060 1.13431 1.46869 1.15663 1.21844 0.93510 0.93410 0.86323 0.86844 1.23171 0.98174 0.96233 1.00292 1.21074 0.82828 0.96483 0.93590 1.44547 1.03004 1.15984 1.70833 1.19322 0.88477 1.04529 1.24739 0.91207 1.25640 1.00450 1.01065 0.98633 1.70149 1.27704 1.27860 1.33912 0.85085 0.78416 0.78041 0.77902 1.20715 1.21688 1.19939 1.21605 0.96042 0.86443 0.95338 0.92578 0.93322 0.89148 0.89116 0.87929 0.86473 0.86665 0.91022 0.90258 0.80227 0.75576 0.89954 0.91672 0.95735 0.97753 0.94240 0.96224 0.96355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 71.98 0.74 -1.35 16 2 C 0.10 1.44 5.91 86.38 0.51 1.96 16 3 N -0.60 -15.59 2.54 -791.25 -2.01 -17.60 16 4 C 0.50 14.37 6.78 87.66 0.59 14.96 16 5 O -0.57 -23.05 12.33 -3.05 -0.04 -23.09 16 6 C -0.12 -2.15 4.23 29.84 0.13 -2.03 16 7 C -0.02 -0.48 5.04 29.85 0.15 -0.33 16 8 C -0.22 -3.85 5.85 24.64 0.14 -3.71 16 9 C 0.02 0.41 11.25 83.66 0.94 1.35 16 10 N -0.50 -9.64 10.54 -203.74 -2.15 -11.79 16 11 C 0.02 0.22 12.23 130.65 1.60 1.82 16 12 S 0.15 2.00 23.22 -56.49 -1.31 0.68 16 13 C 0.15 5.30 3.44 46.18 0.16 5.46 16 14 H 0.11 3.36 7.88 -2.39 -0.02 3.34 16 15 C -0.14 -5.64 6.40 31.99 0.20 -5.44 16 16 C 0.19 9.85 5.42 86.85 0.47 10.32 16 17 N -0.62 -34.69 3.39 -691.98 -2.35 -37.04 16 18 C -0.24 -14.73 10.24 84.03 0.86 -13.87 16 19 H 0.07 4.17 7.85 -2.91 -0.02 4.14 16 20 C -0.06 -3.92 5.40 84.86 0.46 -3.46 16 21 N -0.95 -59.76 10.68 21.65 0.23 -59.53 16 22 Si 0.98 48.50 29.56 68.60 2.03 50.53 16 23 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 25 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 26 C 0.13 5.97 6.49 86.73 0.56 6.53 16 27 H 0.06 0.71 7.22 -2.39 -0.02 0.69 16 28 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.20 7.96 -2.39 -0.02 1.18 16 31 H 0.10 1.02 6.44 -2.39 -0.02 1.01 16 32 H 0.12 1.60 7.40 -2.38 -0.02 1.58 16 33 H 0.12 1.56 7.18 -2.38 -0.02 1.54 16 34 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.23 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.06 2.91 5.81 -2.39 -0.01 2.89 16 40 H 0.02 1.48 6.94 -2.39 -0.02 1.46 16 41 H 0.00 0.25 8.07 -2.39 -0.02 0.23 16 42 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.02 0.95 6.28 -2.39 -0.01 0.94 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -81.17 364.73 2.91 -78.25 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.99 Total: 7.37 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 7.52 Total: 12.20 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.27 Total: -125.95 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.31 Total: 0.68 kcal Total: -81.17 2.91 -78.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753458245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.302 kcal (2) G-P(sol) polarization free energy of solvation -81.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds