Wall clock time and date at job start Tue Mar 31 2020 14:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33649 * 125.80493 * 2 1 4 4 C 1.34216 * 110.91110 * 180.27304 * 3 2 1 5 5 C 1.34182 * 109.12227 * 359.75883 * 4 3 2 6 6 C 1.36425 * 125.80058 * 179.86359 * 2 1 3 7 7 C 1.47382 * 127.18929 * 0.02562 * 6 2 1 8 8 O 1.21611 * 120.00020 * 359.70922 * 7 6 2 9 9 N 1.34779 * 119.99817 * 179.70692 * 7 6 2 10 10 C 1.46497 * 119.99900 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47145 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46695 * 55.00137 * 11 10 9 13 13 C 1.52997 * 109.47018 * 295.00697 * 11 10 9 14 14 C 1.52993 * 109.47169 * 175.00074 * 11 10 9 15 15 N 1.46905 * 109.47039 * 185.00340 * 14 11 10 16 16 C 1.46901 * 110.99870 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47100 * 90.00351 * 24 22 20 26 26 H 1.48501 * 109.47251 * 210.00371 * 24 22 20 27 27 H 1.48503 * 109.46881 * 330.00485 * 24 22 20 28 28 H 1.09004 * 109.46781 * 270.13591 * 1 2 3 29 29 H 1.08994 * 109.47444 * 30.13223 * 1 2 3 30 30 H 1.09000 * 109.47752 * 150.14416 * 1 2 3 31 31 H 1.07996 * 125.44066 * 179.76426 * 4 3 2 32 32 H 1.07997 * 127.02430 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99425 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47036 * 60.00440 * 10 9 7 35 35 H 1.08994 * 109.47323 * 300.00632 * 10 9 7 36 36 H 1.08996 * 109.47633 * 59.99846 * 13 11 10 37 37 H 1.09008 * 109.46827 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.46936 * 299.99328 * 13 11 10 39 39 H 1.09001 * 109.47393 * 65.00621 * 14 11 10 40 40 H 1.08998 * 109.47408 * 305.00267 * 14 11 10 41 41 H 1.00901 * 110.99869 * 56.04956 * 15 14 11 42 42 H 1.09004 * 109.47031 * 299.99620 * 16 15 14 43 43 H 1.08995 * 109.47111 * 59.99900 * 16 15 14 44 44 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0060 5 6 3.6849 -0.5992 -0.0048 6 6 2.3050 -1.1065 0.0026 7 6 1.8739 -2.5158 0.0055 8 8 0.6889 -2.7892 0.0110 9 7 2.7929 -3.5017 0.0019 10 6 2.3644 -4.9026 0.0053 11 6 3.5946 -5.8122 -0.0005 12 1 4.2416 -5.5536 0.8378 13 6 4.3602 -5.6262 -1.3119 14 6 3.1509 -7.2707 0.1287 15 7 4.3340 -8.1340 0.2437 16 6 3.9457 -9.5452 0.3691 17 6 5.1827 -10.3981 0.4852 18 8 6.2798 -9.8813 0.4648 19 7 5.0698 -11.7353 0.6105 20 6 6.1952 -12.5113 0.7155 21 1 7.1721 -12.0511 0.6974 22 6 6.0789 -13.8898 0.8453 23 7 4.8902 -14.4498 0.8668 24 14 7.6122 -14.9472 0.9876 25 1 7.9817 -15.0933 2.4185 26 1 7.3452 -16.2873 0.4061 27 1 8.7288 -14.3017 0.2515 28 1 -0.3633 0.0024 1.0277 29 1 -0.3634 0.8887 -0.5158 30 1 -0.3634 -0.8912 -0.5116 31 1 4.4172 1.4283 -0.0109 32 1 4.5927 -1.1842 -0.0089 33 1 3.7380 -3.2835 -0.0021 34 1 1.7625 -5.1005 -0.8816 35 1 1.7710 -5.0989 0.8982 36 1 4.6763 -4.5871 -1.4040 37 1 5.2364 -6.2747 -1.3162 38 1 3.7133 -5.8848 -2.1502 39 1 2.5776 -7.5557 -0.7534 40 1 2.5305 -7.3845 1.0176 41 1 4.9161 -7.8487 1.0169 42 1 3.3305 -9.6750 1.2596 43 1 3.3781 -9.8456 -0.5116 44 1 4.1925 -12.1487 0.6264 45 1 4.8091 -15.4122 0.9570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753605997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:06 Heat of formation + Delta-G solvation = -70.683877 kcal Electronic energy + Delta-G solvation = -25779.452716 eV Core-core repulsion = 21798.160040 eV Total energy + Delta-G solvation = -3981.292677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.96934 -39.75164 -38.36772 -37.19247 -34.92168 -33.88145 -33.45987 -32.46972 -31.96759 -31.18760 -27.77415 -27.37620 -26.52205 -24.91805 -23.64602 -22.78651 -21.31978 -20.81815 -19.97276 -19.17161 -18.25594 -17.85422 -16.75627 -16.42161 -16.19341 -15.90337 -15.75645 -15.28689 -14.91225 -14.69826 -14.36071 -14.26943 -13.82331 -13.62622 -13.56255 -13.40360 -13.34316 -13.22691 -13.09424 -12.60361 -12.39000 -12.14062 -11.93174 -11.67949 -11.51907 -11.15256 -11.06110 -10.98932 -10.87786 -10.39545 -10.24063 -10.23572 -10.20856 -9.51001 -9.33928 -8.95076 -8.46384 -8.05587 -7.95791 -6.41707 -3.82600 0.99581 1.63676 2.38783 2.95990 3.07780 3.17744 3.26427 3.32418 3.91046 4.08594 4.10170 4.30674 4.42008 4.45070 4.71130 4.79623 4.87334 4.95000 5.10004 5.13286 5.17061 5.25056 5.26706 5.34175 5.42547 5.47421 5.60373 5.67896 5.74662 5.76554 5.85846 5.87539 5.89810 5.98882 6.09117 6.23558 6.27067 6.39427 6.59953 7.19838 7.25179 7.55125 7.64909 7.96872 8.06331 8.61266 9.17819 9.54464 10.05805 10.76008 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.001603 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.036082 B =17464.577240 C =17989.134902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.079 3.921 3 O -0.177 6.177 4 C -0.038 4.038 5 C -0.189 4.189 6 C -0.248 4.248 7 C 0.589 3.411 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.125 3.875 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.066 3.934 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.209 0.791 32 H 0.157 0.843 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 28.295 -1.626 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 O -0.073 6.073 4 C -0.104 4.104 5 C -0.208 4.208 6 C -0.253 4.253 7 C 0.377 3.623 8 O -0.423 6.423 9 N -0.370 5.370 10 C 0.001 3.999 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.198 4.198 14 C -0.064 4.064 15 N -0.298 5.298 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.225 0.775 32 H 0.175 0.825 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.994 28.452 -2.304 29.643 hybrid contribution 0.620 -0.989 1.029 1.556 sum -7.374 27.463 -1.275 28.465 Atomic orbital electron populations 1.20629 0.83680 1.05150 1.04495 1.22859 0.94180 0.83099 0.97278 1.83779 1.17215 1.35005 1.71298 1.23879 0.83514 0.96437 1.06555 1.22889 0.96647 0.94624 1.06622 1.21163 0.93376 0.93885 1.16840 1.17173 0.85436 0.83730 0.75918 1.90761 1.16589 1.84105 1.50853 1.45776 1.09785 1.06149 1.75301 1.21416 0.96745 0.79107 1.02589 1.21343 0.96064 0.94434 1.00065 0.90529 1.21760 1.01465 1.00754 0.95779 1.21893 0.92505 0.91246 1.00773 1.60036 1.17569 1.01107 1.51125 1.21667 0.96736 0.88785 1.01009 1.19812 0.90051 0.83121 0.84384 1.90517 1.27782 1.72814 1.55717 1.41866 1.09683 1.04749 1.63747 1.19706 0.88013 0.88258 1.46972 0.87923 1.25267 0.98148 0.97202 0.97342 1.69615 1.22396 1.11985 1.50293 0.85851 0.81154 0.78770 0.78468 1.20442 1.20921 1.19414 0.89259 0.90356 0.87217 0.77492 0.82495 0.76397 0.91054 0.91338 0.93756 0.90388 0.92745 0.90693 0.95240 0.83251 0.93872 0.89567 0.77446 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.89 36.00 0.36 -0.23 16 2 C 0.08 0.71 7.37 -34.96 -0.26 0.45 16 3 O -0.18 -1.44 10.52 7.66 0.08 -1.36 16 4 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 5 C -0.19 -1.32 10.60 -37.46 -0.40 -1.72 16 6 C -0.25 -2.38 6.31 -103.27 -0.65 -3.03 16 7 C 0.59 6.56 7.81 -12.54 -0.10 6.46 16 8 O -0.54 -7.51 14.85 5.27 0.08 -7.43 16 9 N -0.72 -6.57 5.28 -61.40 -0.32 -6.90 16 10 C 0.13 1.20 5.06 -4.04 -0.02 1.18 16 11 C -0.10 -0.97 2.57 -90.62 -0.23 -1.20 16 12 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 13 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 14 C 0.07 0.77 5.07 -3.82 -0.02 0.75 16 15 N -0.67 -10.27 5.58 -115.06 -0.64 -10.91 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.44 10.35 7.82 -10.99 -0.09 10.27 16 18 O -0.58 -15.74 15.78 5.55 0.09 -15.65 16 19 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.11 0.92 6.49 -51.93 -0.34 0.59 16 31 H 0.21 0.44 8.06 -52.49 -0.42 0.02 16 32 H 0.16 0.73 7.74 -52.49 -0.41 0.32 16 33 H 0.40 2.87 6.83 -40.82 -0.28 2.59 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.37 7.18 -51.93 -0.37 0.00 16 37 H 0.08 0.97 7.75 -51.92 -0.40 0.56 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -33.88 383.32 -6.91 -40.79 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.61 Total: 13.05 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.99 Total: 4.79 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.30 Total: -55.98 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.25 Total: -24.45 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.88 -6.91 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753605997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.895 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds