Wall clock time and date at job start Tue Mar 31 2020 14:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33649 * 125.80493 * 2 1 4 4 C 1.34216 * 110.91110 * 180.27304 * 3 2 1 5 5 C 1.34182 * 109.12227 * 359.75883 * 4 3 2 6 6 C 1.36425 * 125.80058 * 179.86359 * 2 1 3 7 7 C 1.47382 * 127.18929 * 0.02562 * 6 2 1 8 8 O 1.21611 * 120.00020 * 359.70922 * 7 6 2 9 9 N 1.34779 * 119.99817 * 179.70692 * 7 6 2 10 10 C 1.46497 * 119.99900 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47145 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46695 * 55.00137 * 11 10 9 13 13 C 1.52997 * 109.47018 * 295.00697 * 11 10 9 14 14 C 1.52993 * 109.47169 * 175.00074 * 11 10 9 15 15 N 1.46905 * 109.47039 * 185.00340 * 14 11 10 16 16 C 1.46901 * 110.99870 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00024 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99767 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00171 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00074 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99768 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00310 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47100 * 90.00351 * 24 22 20 26 26 H 1.48501 * 109.47251 * 210.00371 * 24 22 20 27 27 H 1.48503 * 109.46881 * 330.00485 * 24 22 20 28 28 H 1.09004 * 109.46781 * 270.13591 * 1 2 3 29 29 H 1.08994 * 109.47444 * 30.13223 * 1 2 3 30 30 H 1.09000 * 109.47752 * 150.14416 * 1 2 3 31 31 H 1.07996 * 125.44066 * 179.76426 * 4 3 2 32 32 H 1.07997 * 127.02430 * 179.97438 * 5 4 3 33 33 H 0.97000 * 119.99425 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47036 * 60.00440 * 10 9 7 35 35 H 1.08994 * 109.47323 * 300.00632 * 10 9 7 36 36 H 1.08996 * 109.47633 * 59.99846 * 13 11 10 37 37 H 1.09008 * 109.46827 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.46936 * 299.99328 * 13 11 10 39 39 H 1.09001 * 109.47393 * 65.00621 * 14 11 10 40 40 H 1.08998 * 109.47408 * 305.00267 * 14 11 10 41 41 H 1.00901 * 110.99869 * 56.04956 * 15 14 11 42 42 H 1.09004 * 109.47031 * 299.99620 * 16 15 14 43 43 H 1.08995 * 109.47111 * 59.99900 * 16 15 14 44 44 H 0.96997 * 120.00713 * 359.97438 * 19 17 16 45 45 H 0.96999 * 119.99907 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0060 5 6 3.6849 -0.5992 -0.0048 6 6 2.3050 -1.1065 0.0026 7 6 1.8739 -2.5158 0.0055 8 8 0.6889 -2.7892 0.0110 9 7 2.7929 -3.5017 0.0019 10 6 2.3644 -4.9026 0.0053 11 6 3.5946 -5.8122 -0.0005 12 1 4.2416 -5.5536 0.8378 13 6 4.3602 -5.6262 -1.3119 14 6 3.1509 -7.2707 0.1287 15 7 4.3340 -8.1340 0.2437 16 6 3.9457 -9.5452 0.3691 17 6 5.1827 -10.3981 0.4852 18 8 6.2798 -9.8813 0.4648 19 7 5.0698 -11.7353 0.6105 20 6 6.1952 -12.5113 0.7155 21 1 7.1721 -12.0511 0.6974 22 6 6.0789 -13.8898 0.8453 23 7 4.8902 -14.4498 0.8668 24 14 7.6122 -14.9472 0.9876 25 1 7.9817 -15.0933 2.4185 26 1 7.3452 -16.2873 0.4061 27 1 8.7288 -14.3017 0.2515 28 1 -0.3633 0.0024 1.0277 29 1 -0.3634 0.8887 -0.5158 30 1 -0.3634 -0.8912 -0.5116 31 1 4.4172 1.4283 -0.0109 32 1 4.5927 -1.1842 -0.0089 33 1 3.7380 -3.2835 -0.0021 34 1 1.7625 -5.1005 -0.8816 35 1 1.7710 -5.0989 0.8982 36 1 4.6763 -4.5871 -1.4040 37 1 5.2364 -6.2747 -1.3162 38 1 3.7133 -5.8848 -2.1502 39 1 2.5776 -7.5557 -0.7534 40 1 2.5305 -7.3845 1.0176 41 1 4.9161 -7.8487 1.0169 42 1 3.3305 -9.6750 1.2596 43 1 3.3781 -9.8456 -0.5116 44 1 4.1925 -12.1487 0.6264 45 1 4.8091 -15.4122 0.9570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753605997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:05 Heat of formation + Delta-G solvation = -96.231255 kcal Electronic energy + Delta-G solvation = -25780.560534 eV Core-core repulsion = 21798.160040 eV Total energy + Delta-G solvation = -3982.400494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.53487 -40.59574 -40.14147 -38.26054 -36.19682 -35.66164 -34.16173 -33.38589 -33.13262 -32.63233 -28.90181 -28.31815 -27.32783 -26.50282 -24.78590 -23.67111 -21.95059 -21.68860 -21.11264 -20.56279 -19.88047 -18.86275 -17.81357 -17.35621 -17.04942 -16.99195 -16.81013 -16.53984 -16.25797 -15.97090 -15.56588 -15.38486 -15.18976 -14.91665 -14.41825 -14.34519 -14.09310 -13.90371 -13.80653 -13.74737 -13.53684 -13.40030 -13.16107 -13.01377 -12.83777 -12.68018 -12.41519 -12.12322 -12.01920 -11.95483 -11.72173 -11.50029 -11.09662 -10.85105 -10.33861 -10.12653 -10.01158 -9.52258 -9.29313 -8.46322 -5.95188 0.32068 1.12893 1.38484 1.42269 1.55122 1.83521 2.05926 2.21784 2.30762 2.30855 2.96189 3.21071 3.53401 3.61111 3.76732 3.86717 3.89241 3.99950 4.07633 4.33445 4.36678 4.48515 4.50192 4.58679 4.61245 4.62920 4.63487 4.72298 4.79382 4.83611 4.89710 4.97409 5.08084 5.19574 5.27712 5.37111 5.41252 5.44596 5.52963 5.89013 6.03726 6.10520 6.42263 6.52461 6.60427 7.12877 7.18311 7.56837 8.11872 8.71032 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.001603 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.036082 B =17464.577240 C =17989.134902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.066 3.934 3 O -0.184 6.184 4 C -0.032 4.032 5 C -0.198 4.198 6 C -0.273 4.273 7 C 0.584 3.416 8 O -0.579 6.579 9 N -0.709 5.709 10 C 0.133 3.867 11 C -0.087 4.087 12 H 0.083 0.917 13 C -0.136 4.136 14 C 0.067 3.933 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.179 0.821 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.344 0.656 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 29.354 -1.508 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 O -0.080 6.080 4 C -0.096 4.096 5 C -0.217 4.217 6 C -0.277 4.277 7 C 0.374 3.626 8 O -0.461 6.461 9 N -0.360 5.360 10 C 0.009 3.991 11 C -0.106 4.106 12 H 0.101 0.899 13 C -0.194 4.194 14 C -0.063 4.063 15 N -0.309 5.309 16 C -0.068 4.068 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.263 0.737 32 H 0.196 0.804 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.699 29.519 -2.188 30.584 hybrid contribution 0.530 -1.234 0.979 1.662 sum -7.168 28.284 -1.209 29.204 Atomic orbital electron populations 1.20621 0.83039 1.05228 1.04905 1.23149 0.94951 0.83331 0.97280 1.83794 1.18152 1.34784 1.71242 1.24692 0.83417 0.96987 1.04544 1.23176 0.96197 0.95284 1.07053 1.21267 0.95122 0.93168 1.18158 1.17470 0.85138 0.84653 0.75370 1.90737 1.17995 1.84723 1.52617 1.45680 1.10194 1.05661 1.74504 1.21279 0.96414 0.79298 1.02156 1.21199 0.96022 0.93254 1.00126 0.89856 1.21705 1.00406 1.01406 0.95840 1.21963 0.91272 0.91510 1.01508 1.60030 1.19295 1.00483 1.51121 1.21527 0.93642 0.88849 1.02769 1.20885 0.91566 0.82898 0.82100 1.90485 1.30068 1.73452 1.56880 1.41943 1.09200 1.05505 1.64482 1.19681 0.88082 0.89369 1.49306 0.90257 1.26051 1.01203 0.97742 0.96320 1.69676 1.23829 1.12579 1.50054 0.84916 0.77421 0.77240 0.78681 1.19601 1.19596 1.19778 0.88663 0.88395 0.88923 0.73673 0.80364 0.75112 0.91634 0.91718 0.91892 0.92695 0.93041 0.90272 0.94015 0.83689 0.91633 0.87908 0.76991 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.89 71.24 0.70 -0.44 16 2 C 0.07 1.15 7.37 25.26 0.19 1.33 16 3 O -0.18 -2.72 10.52 4.49 0.05 -2.67 16 4 C -0.03 -0.30 12.03 66.89 0.80 0.50 16 5 C -0.20 -2.38 10.60 23.65 0.25 -2.13 16 6 C -0.27 -5.03 6.31 -18.99 -0.12 -5.15 16 7 C 0.58 12.83 7.81 86.65 0.68 13.51 16 8 O -0.58 -16.26 14.85 -4.07 -0.06 -16.32 16 9 N -0.71 -12.17 5.28 -466.42 -2.46 -14.63 16 10 C 0.13 2.39 5.06 86.38 0.44 2.83 16 11 C -0.09 -1.55 2.57 -10.80 -0.03 -1.58 16 12 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 13 C -0.14 -2.58 8.95 71.98 0.64 -1.93 16 14 C 0.07 1.44 5.07 86.30 0.44 1.87 16 15 N -0.68 -20.13 5.58 -517.93 -2.89 -23.02 16 16 C 0.06 2.17 6.17 85.56 0.53 2.69 16 17 C 0.44 20.69 7.82 87.66 0.69 21.37 16 18 O -0.62 -34.16 15.78 -3.07 -0.05 -34.21 16 19 N -0.57 -29.46 5.29 -306.99 -1.62 -31.08 16 20 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 24 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.63 6.49 -2.39 -0.02 1.62 16 31 H 0.25 0.12 8.06 -2.91 -0.02 0.10 16 32 H 0.18 1.19 7.74 -2.91 -0.02 1.16 16 33 H 0.41 5.15 6.83 -92.71 -0.63 4.52 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 0.94 7.18 -2.39 -0.02 0.92 16 37 H 0.05 1.32 7.75 -2.38 -0.02 1.30 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.34 10.70 8.43 -89.69 -0.76 9.94 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 45 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -74.27 383.32 0.68 -73.59 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -1.08 Total: 38.47 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.49 Total: 14.40 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -6.69 Total: -118.19 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.06 Total: -53.20 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.27 0.68 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753605997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.643 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds