Wall clock time and date at job start Tue Mar 31 2020 14:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33652 * 125.80332 * 2 1 4 4 C 1.34216 * 110.91150 * 180.02562 * 3 2 1 5 5 C 1.34183 * 109.12288 * 359.74945 * 4 3 2 6 6 C 1.36413 * 125.80298 * 180.02562 * 2 1 3 7 7 C 1.47381 * 127.19122 * 359.95645 * 6 2 1 8 8 O 1.21615 * 120.00134 * 0.02562 * 7 6 2 9 9 N 1.34779 * 120.00025 * 180.02562 * 7 6 2 10 10 C 1.46506 * 119.99908 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47326 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99776 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00409 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00306 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46581 * 325.00172 * 14 13 11 16 16 C 1.52997 * 109.46969 * 84.99801 * 14 13 11 17 17 C 1.52992 * 109.47005 * 205.00035 * 14 13 11 18 18 C 1.52997 * 109.47482 * 64.99872 * 17 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 14 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 H 1.09000 * 109.47076 * 269.99772 * 1 2 3 29 29 H 1.09001 * 109.47179 * 29.99396 * 1 2 3 30 30 H 1.09001 * 109.47573 * 149.99624 * 1 2 3 31 31 H 1.07996 * 125.44137 * 179.97438 * 4 3 2 32 32 H 1.07992 * 127.02226 * 180.26609 * 5 4 3 33 33 H 0.96996 * 120.00189 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.47408 * 59.99282 * 10 9 7 35 35 H 1.09008 * 109.46486 * 299.99503 * 10 9 7 36 36 H 0.97003 * 119.99459 * 359.97438 * 13 11 10 37 37 H 1.09007 * 109.46964 * 180.02562 * 16 14 13 38 38 H 1.09004 * 109.47224 * 299.99986 * 16 14 13 39 39 H 1.09000 * 109.47346 * 59.99964 * 16 14 13 40 40 H 1.09002 * 109.47103 * 304.99625 * 17 14 13 41 41 H 1.08998 * 109.46862 * 185.00437 * 17 14 13 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 44 44 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 45 45 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0046 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0002 8 8 0.6890 -2.7892 0.0000 9 7 2.7931 -3.5015 -0.0003 10 6 2.3645 -4.9025 -0.0006 11 6 3.5762 -5.7985 -0.0012 12 8 4.6884 -5.3144 -0.0019 13 7 3.4242 -7.1376 -0.0011 14 6 4.6022 -8.0086 -0.0022 15 1 5.3942 -7.5476 -0.5925 16 6 5.0884 -8.2106 1.4343 17 6 4.2344 -9.3629 -0.6115 18 6 3.8673 -9.1766 -2.0850 19 7 3.5157 -10.4736 -2.6685 20 6 3.1497 -10.5553 -3.9855 21 1 3.1207 -9.6635 -4.5942 22 6 2.8161 -11.7840 -4.5382 23 7 2.8510 -12.8706 -3.7964 24 14 2.3175 -11.8956 -6.3351 25 1 2.3589 -10.5423 -6.9452 26 1 3.2579 -12.7915 -7.0550 27 1 0.9402 -12.4416 -6.4336 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 4.4173 1.4284 -0.0011 32 1 4.5928 -1.1840 0.0096 33 1 3.7382 -3.2835 -0.0009 34 1 1.7669 -5.0995 -0.8906 35 1 1.7668 -5.0998 0.8894 36 1 2.5348 -7.5247 -0.0002 37 1 5.9652 -8.8584 1.4334 38 1 5.3505 -7.2457 1.8683 39 1 4.2964 -8.6715 2.0246 40 1 3.3835 -9.7834 -0.0754 41 1 5.0847 -10.0402 -0.5316 42 1 4.7182 -8.7561 -2.6211 43 1 3.0170 -8.4994 -2.1647 44 1 3.5415 -11.2743 -2.1217 45 1 2.6175 -13.7293 -4.1824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753968719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:09 Heat of formation + Delta-G solvation = -58.199761 kcal Electronic energy + Delta-G solvation = -26219.455096 eV Core-core repulsion = 22238.703772 eV Total energy + Delta-G solvation = -3980.751325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.92369 -40.32594 -39.24369 -36.72610 -34.72150 -34.38242 -33.38156 -32.24676 -32.06088 -30.82530 -28.43340 -27.91505 -26.84479 -24.10122 -23.48146 -21.96546 -21.39176 -20.85712 -20.59543 -20.21950 -18.51137 -17.25964 -16.89742 -16.72234 -16.60846 -16.02134 -15.91147 -15.55044 -14.88384 -14.73306 -14.55243 -13.93894 -13.83853 -13.61758 -13.46602 -13.41416 -13.32449 -13.26908 -13.11488 -12.90372 -12.85920 -12.34309 -12.09846 -11.93188 -11.26284 -11.06860 -10.84126 -10.69573 -10.60404 -10.30005 -10.18998 -10.06347 -10.03125 -9.73394 -9.44555 -9.14248 -8.91935 -8.89497 -6.95343 -5.79230 -3.08239 1.02421 1.68948 2.39578 2.42645 2.68653 3.07927 3.31313 3.42111 3.48049 3.50152 4.14709 4.40621 4.49752 4.53379 4.58478 4.89884 4.91481 5.06380 5.13780 5.16334 5.18950 5.19564 5.28697 5.32765 5.48163 5.52236 5.66350 5.69194 5.78994 5.87063 5.91372 5.94400 6.05904 6.18360 6.21881 6.28792 6.41551 6.64345 6.76391 6.81004 7.25121 7.36705 7.68418 7.94572 8.02674 8.39699 9.50966 10.08113 10.42630 11.43657 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.002137 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.198253 B =13101.215189 C =14287.749352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 O -0.177 6.177 4 C -0.039 4.039 5 C -0.186 4.186 6 C -0.247 4.247 7 C 0.594 3.406 8 O -0.543 6.543 9 N -0.710 5.710 10 C 0.099 3.901 11 C 0.511 3.489 12 O -0.544 6.544 13 N -0.711 5.711 14 C 0.145 3.855 15 H 0.090 0.910 16 C -0.161 4.161 17 C -0.136 4.136 18 C 0.154 3.846 19 N -0.734 5.734 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.209 0.791 32 H 0.159 0.841 33 H 0.412 0.588 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.406 0.594 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 25.428 13.502 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 O -0.073 6.073 4 C -0.105 4.105 5 C -0.205 4.205 6 C -0.252 4.252 7 C 0.382 3.618 8 O -0.422 6.422 9 N -0.365 5.365 10 C -0.028 4.028 11 C 0.296 3.704 12 O -0.422 6.422 13 N -0.363 5.363 14 C 0.041 3.959 15 H 0.108 0.892 16 C -0.219 4.219 17 C -0.174 4.174 18 C 0.026 3.974 19 N -0.378 5.378 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.225 0.775 32 H 0.177 0.823 33 H 0.250 0.750 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.241 0.759 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.187 25.877 13.322 29.105 hybrid contribution 0.116 -0.764 -0.847 1.147 sum 0.302 25.113 12.474 28.042 Atomic orbital electron populations 1.20640 0.83618 1.05239 1.04491 1.22846 0.94171 0.83060 0.97124 1.83779 1.17230 1.34936 1.71308 1.23874 0.83474 0.96410 1.06718 1.22937 0.96738 0.94629 1.06229 1.21046 0.93492 0.93531 1.17110 1.17123 0.85180 0.83704 0.75774 1.90772 1.16479 1.84055 1.50887 1.45444 1.11030 1.04522 1.75481 1.21096 0.95363 0.81114 1.05235 1.20413 0.90520 0.83372 0.76077 1.90682 1.26268 1.74876 1.50362 1.46035 1.10880 1.05353 1.74009 1.21029 0.87722 0.90481 0.96690 0.89216 1.22164 1.01537 1.01994 0.96240 1.22075 1.02627 0.95003 0.97670 1.20637 0.96873 0.89772 0.90114 1.42371 1.81842 1.03731 1.09888 1.19267 1.37417 0.93405 0.86948 0.91188 1.24751 1.02573 0.95530 0.98214 1.69665 1.55304 0.98079 1.35182 0.86112 0.77842 0.77390 0.84834 1.20543 1.21831 1.21814 0.89237 0.90311 0.87156 0.77461 0.82334 0.74975 0.87885 0.88161 0.75932 0.91398 0.92438 0.92403 0.91222 0.90115 0.96446 0.96379 0.78304 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.89 36.01 0.36 -0.27 16 2 C 0.08 0.77 7.37 -34.97 -0.26 0.51 16 3 O -0.18 -1.54 10.52 7.65 0.08 -1.46 16 4 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 5 C -0.19 -1.52 10.60 -37.45 -0.40 -1.92 16 6 C -0.25 -2.58 6.31 -103.28 -0.65 -3.24 16 7 C 0.59 7.07 7.81 -12.54 -0.10 6.97 16 8 O -0.54 -7.57 14.85 5.26 0.08 -7.49 16 9 N -0.71 -7.67 5.52 -62.57 -0.35 -8.02 16 10 C 0.10 1.01 6.15 -5.19 -0.03 0.98 16 11 C 0.51 6.03 7.86 -10.99 -0.09 5.94 16 12 O -0.54 -7.89 15.33 5.55 0.09 -7.81 16 13 N -0.71 -7.95 4.53 -53.81 -0.24 -8.19 16 14 C 0.15 1.81 2.57 -67.93 -0.17 1.63 16 15 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 16 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 17 C -0.14 -1.97 4.87 -26.74 -0.13 -2.10 16 18 C 0.15 2.98 6.15 -4.04 -0.02 2.95 16 19 N -0.73 -18.37 5.60 -59.91 -0.34 -18.70 16 20 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 21 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.97 6.49 -51.93 -0.34 0.64 16 31 H 0.21 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.16 1.02 7.74 -52.49 -0.41 0.62 16 33 H 0.41 4.26 6.61 -40.82 -0.27 3.99 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.41 3.88 8.60 -40.82 -0.35 3.53 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 44 H 0.38 10.01 7.67 -40.82 -0.31 9.69 16 45 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -34.99 384.93 -6.89 -41.88 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.67 Total: 11.18 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.04 Total: 2.79 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.20 Total: -62.33 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.24 Total: -16.76 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.99 -6.89 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753968719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.319 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds