Wall clock time and date at job start Tue Mar 31 2020 14:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33652 * 125.80332 * 2 1 4 4 C 1.34216 * 110.91150 * 180.02562 * 3 2 1 5 5 C 1.34183 * 109.12288 * 359.74945 * 4 3 2 6 6 C 1.36413 * 125.80298 * 180.02562 * 2 1 3 7 7 C 1.47381 * 127.19122 * 359.95645 * 6 2 1 8 8 O 1.21615 * 120.00134 * 0.02562 * 7 6 2 9 9 N 1.34779 * 120.00025 * 180.02562 * 7 6 2 10 10 C 1.46506 * 119.99908 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47326 * 179.97438 * 10 9 7 12 12 O 1.21292 * 119.99776 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00409 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00306 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46581 * 325.00172 * 14 13 11 16 16 C 1.52997 * 109.46969 * 84.99801 * 14 13 11 17 17 C 1.52992 * 109.47005 * 205.00035 * 14 13 11 18 18 C 1.52997 * 109.47482 * 64.99872 * 17 14 13 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 14 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46968 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47299 * 119.99957 * 24 22 20 27 27 H 1.48495 * 109.47075 * 240.00117 * 24 22 20 28 28 H 1.09000 * 109.47076 * 269.99772 * 1 2 3 29 29 H 1.09001 * 109.47179 * 29.99396 * 1 2 3 30 30 H 1.09001 * 109.47573 * 149.99624 * 1 2 3 31 31 H 1.07996 * 125.44137 * 179.97438 * 4 3 2 32 32 H 1.07992 * 127.02226 * 180.26609 * 5 4 3 33 33 H 0.96996 * 120.00189 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.47408 * 59.99282 * 10 9 7 35 35 H 1.09008 * 109.46486 * 299.99503 * 10 9 7 36 36 H 0.97003 * 119.99459 * 359.97438 * 13 11 10 37 37 H 1.09007 * 109.46964 * 180.02562 * 16 14 13 38 38 H 1.09004 * 109.47224 * 299.99986 * 16 14 13 39 39 H 1.09000 * 109.47346 * 59.99964 * 16 14 13 40 40 H 1.09002 * 109.47103 * 304.99625 * 17 14 13 41 41 H 1.08998 * 109.46862 * 185.00437 * 17 14 13 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 44 44 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 45 45 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5991 0.0046 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0002 8 8 0.6890 -2.7892 0.0000 9 7 2.7931 -3.5015 -0.0003 10 6 2.3645 -4.9025 -0.0006 11 6 3.5762 -5.7985 -0.0012 12 8 4.6884 -5.3144 -0.0019 13 7 3.4242 -7.1376 -0.0011 14 6 4.6022 -8.0086 -0.0022 15 1 5.3942 -7.5476 -0.5925 16 6 5.0884 -8.2106 1.4343 17 6 4.2344 -9.3629 -0.6115 18 6 3.8673 -9.1766 -2.0850 19 7 3.5157 -10.4736 -2.6685 20 6 3.1497 -10.5553 -3.9855 21 1 3.1207 -9.6635 -4.5942 22 6 2.8161 -11.7840 -4.5382 23 7 2.8510 -12.8706 -3.7964 24 14 2.3175 -11.8956 -6.3351 25 1 2.3589 -10.5423 -6.9452 26 1 3.2579 -12.7915 -7.0550 27 1 0.9402 -12.4416 -6.4336 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 4.4173 1.4284 -0.0011 32 1 4.5928 -1.1840 0.0096 33 1 3.7382 -3.2835 -0.0009 34 1 1.7669 -5.0995 -0.8906 35 1 1.7668 -5.0998 0.8894 36 1 2.5348 -7.5247 -0.0002 37 1 5.9652 -8.8584 1.4334 38 1 5.3505 -7.2457 1.8683 39 1 4.2964 -8.6715 2.0246 40 1 3.3835 -9.7834 -0.0754 41 1 5.0847 -10.0402 -0.5316 42 1 4.7182 -8.7561 -2.6211 43 1 3.0170 -8.4994 -2.1647 44 1 3.5415 -11.2743 -2.1217 45 1 2.6175 -13.7293 -4.1824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753968719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:08 Heat of formation + Delta-G solvation = -84.015135 kcal Electronic energy + Delta-G solvation = -26220.574535 eV Core-core repulsion = 22238.703772 eV Total energy + Delta-G solvation = -3981.870763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.55895 -41.28748 -40.18579 -37.95839 -36.18241 -35.55807 -34.07535 -33.65456 -32.80550 -32.28181 -29.53982 -29.14762 -27.51206 -25.88215 -24.32321 -23.32546 -22.42770 -21.82302 -21.57821 -21.02359 -19.33714 -19.08788 -17.83754 -17.61795 -17.39392 -16.93224 -16.80596 -16.67115 -16.40380 -15.69226 -15.55302 -15.45374 -15.18552 -14.98646 -14.63267 -14.29147 -14.19276 -14.05694 -13.95937 -13.78669 -13.75741 -13.38605 -13.10817 -12.91939 -12.89840 -12.69371 -12.39414 -12.23645 -11.99911 -11.93217 -11.64630 -11.21920 -11.08056 -10.95906 -10.88403 -10.32659 -10.11697 -9.55139 -9.01663 -7.97509 -5.26292 0.28596 1.09628 1.46635 1.46805 1.47059 1.57207 1.66287 1.94456 2.24555 2.43892 2.54184 3.36369 3.51879 3.59411 3.67344 3.79574 3.87773 4.05255 4.16907 4.29133 4.32016 4.37732 4.38997 4.56989 4.62306 4.62960 4.65820 4.74879 4.77768 4.85810 4.87413 4.98943 5.14092 5.20859 5.25655 5.27968 5.34251 5.36100 5.47658 5.51789 6.00630 6.25517 6.39525 6.44516 7.06443 7.09705 7.32037 8.07621 8.30961 9.25903 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.002137 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.198253 B =13101.215189 C =14287.749352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 O -0.181 6.181 4 C -0.028 4.028 5 C -0.202 4.202 6 C -0.275 4.275 7 C 0.590 3.410 8 O -0.570 6.570 9 N -0.708 5.708 10 C 0.103 3.897 11 C 0.514 3.486 12 O -0.571 6.571 13 N -0.706 5.706 14 C 0.153 3.847 15 H 0.073 0.927 16 C -0.153 4.153 17 C -0.120 4.120 18 C 0.152 3.848 19 N -0.746 5.746 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 0.972 3.028 25 H -0.269 1.269 26 H -0.292 1.292 27 H -0.291 1.291 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.249 0.751 32 H 0.172 0.828 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.415 0.585 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.007 0.993 43 H 0.025 0.975 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 26.886 13.854 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 O -0.077 6.077 4 C -0.093 4.093 5 C -0.221 4.221 6 C -0.279 4.279 7 C 0.380 3.620 8 O -0.452 6.452 9 N -0.362 5.362 10 C -0.024 4.024 11 C 0.301 3.699 12 O -0.451 6.451 13 N -0.358 5.358 14 C 0.048 3.952 15 H 0.091 0.909 16 C -0.211 4.211 17 C -0.158 4.158 18 C 0.026 3.974 19 N -0.389 5.389 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.267 4.267 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.193 1.193 26 H -0.220 1.220 27 H -0.218 1.218 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.265 0.735 32 H 0.189 0.811 33 H 0.253 0.747 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.025 0.975 43 H 0.043 0.957 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.355 27.363 13.684 30.596 hybrid contribution 0.116 -1.145 -0.938 1.485 sum 0.471 26.218 12.746 29.156 Atomic orbital electron populations 1.20656 0.82684 1.05365 1.05119 1.23166 0.95006 0.83117 0.96747 1.83801 1.18035 1.34666 1.71178 1.24665 0.83495 0.96724 1.04383 1.23154 0.96240 0.95461 1.07239 1.21174 0.95099 0.93007 1.18656 1.17382 0.84887 0.84468 0.75257 1.90748 1.17461 1.84571 1.52374 1.45452 1.11042 1.04637 1.75042 1.21126 0.94628 0.80549 1.06123 1.20604 0.90496 0.83482 0.75331 1.90671 1.27420 1.75341 1.51694 1.45976 1.11086 1.05167 1.73589 1.20854 0.87626 0.89141 0.97541 0.90900 1.22085 1.02260 1.02069 0.94718 1.21909 1.02996 0.96365 0.94512 1.20790 0.96446 0.87403 0.92765 1.42575 1.81777 1.05401 1.09157 1.19621 1.36372 0.93430 0.88357 0.91074 1.25552 1.03474 0.95370 1.02304 1.69803 1.56767 0.98372 1.36825 0.85099 0.77097 0.77631 0.80087 1.19327 1.21953 1.21776 0.88306 0.88296 0.88820 0.73526 0.81103 0.74718 0.87612 0.86572 0.74819 0.90583 0.92856 0.91135 0.90207 0.90088 0.97457 0.95750 0.79223 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.89 71.24 0.70 -0.48 16 2 C 0.07 1.35 7.37 25.26 0.19 1.54 16 3 O -0.18 -2.88 10.52 4.46 0.05 -2.84 16 4 C -0.03 -0.32 12.03 66.89 0.80 0.48 16 5 C -0.20 -3.07 10.60 23.65 0.25 -2.82 16 6 C -0.27 -5.67 6.31 -18.99 -0.12 -5.79 16 7 C 0.59 14.10 7.81 86.65 0.68 14.78 16 8 O -0.57 -16.09 14.85 -4.08 -0.06 -16.15 16 9 N -0.71 -15.08 5.52 -470.13 -2.60 -17.67 16 10 C 0.10 2.01 6.15 85.63 0.53 2.54 16 11 C 0.51 11.68 7.86 87.66 0.69 12.37 16 12 O -0.57 -16.25 15.33 -3.07 -0.05 -16.30 16 13 N -0.71 -14.84 4.53 -442.55 -2.00 -16.84 16 14 C 0.15 3.61 2.57 44.99 0.12 3.73 16 15 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 16 C -0.15 -2.99 9.48 71.98 0.68 -2.31 16 17 C -0.12 -3.34 4.87 30.59 0.15 -3.19 16 18 C 0.15 5.81 6.15 86.38 0.53 6.34 16 19 N -0.75 -37.26 5.60 -343.45 -1.92 -39.19 16 20 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 21 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 23 N -0.97 -58.66 13.06 21.65 0.28 -58.37 16 24 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.70 6.49 -2.39 -0.02 1.68 16 31 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 32 H 0.17 2.02 7.74 -2.91 -0.02 1.99 16 33 H 0.41 8.46 6.61 -92.71 -0.61 7.85 16 34 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.42 7.25 8.60 -92.71 -0.80 6.45 16 37 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 44 H 0.38 19.68 7.67 -92.71 -0.71 18.97 16 45 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -74.86 384.93 1.14 -73.72 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -1.09 Total: 35.01 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.50 Total: 10.45 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -6.24 Total: -132.08 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.06 Total: -35.28 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.86 1.14 -73.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753968719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.299 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds