Wall clock time and date at job start Tue Mar 31 2020 14:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33658 * 125.79983 * 2 1 4 4 C 1.34215 * 110.90740 * 180.02562 * 3 2 1 5 5 C 1.34173 * 109.12500 * 359.74378 * 4 3 2 6 6 C 1.36413 * 125.80534 * 180.02562 * 2 1 3 7 7 C 1.47381 * 127.19222 * 359.96135 * 6 2 1 8 8 O 1.21613 * 119.99816 * 359.97438 * 7 6 2 9 9 N 1.34777 * 120.00222 * 180.02562 * 7 6 2 10 10 C 1.46498 * 119.99828 * 180.27565 * 9 7 6 11 11 C 1.50700 * 109.46769 * 179.72341 * 10 9 7 12 12 O 1.21275 * 120.00486 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99600 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99943 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.46975 * 35.00414 * 14 13 11 16 16 C 1.53001 * 109.47313 * 275.00344 * 14 13 11 17 17 C 1.52995 * 109.47221 * 154.99607 * 14 13 11 18 18 C 1.53001 * 109.47625 * 295.00754 * 17 14 13 19 19 N 1.46503 * 109.47100 * 179.97438 * 18 17 14 20 20 C 1.36932 * 119.99554 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00245 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99644 * 179.97438 * 20 19 18 23 23 N 1.31611 * 120.00215 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99692 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47275 * 90.00359 * 24 22 20 26 26 H 1.48507 * 109.47039 * 210.00362 * 24 22 20 27 27 H 1.48501 * 109.47515 * 329.99808 * 24 22 20 28 28 H 1.09001 * 109.46815 * 269.99339 * 1 2 3 29 29 H 1.09001 * 109.47518 * 29.99488 * 1 2 3 30 30 H 1.09002 * 109.47379 * 149.99929 * 1 2 3 31 31 H 1.08005 * 125.43700 * 180.02562 * 4 3 2 32 32 H 1.08000 * 127.02414 * 180.26045 * 5 4 3 33 33 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 35 35 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 36 36 H 0.96995 * 120.00445 * 0.02562 * 13 11 10 37 37 H 1.08999 * 109.46732 * 299.99820 * 16 14 13 38 38 H 1.08995 * 109.47358 * 59.99738 * 16 14 13 39 39 H 1.09001 * 109.46931 * 179.97438 * 16 14 13 40 40 H 1.09004 * 109.46674 * 55.00937 * 17 14 13 41 41 H 1.09002 * 109.47209 * 175.00081 * 17 14 13 42 42 H 1.09006 * 109.46470 * 299.99334 * 18 17 14 43 43 H 1.09001 * 109.46852 * 59.99457 * 18 17 14 44 44 H 0.96997 * 120.00250 * 0.02562 * 19 18 17 45 45 H 0.96999 * 120.00567 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5858 0.7391 -0.0006 5 6 3.6849 -0.5989 0.0047 6 6 2.3050 -1.1063 -0.0005 7 6 1.8740 -2.5157 -0.0003 8 8 0.6891 -2.7892 0.0008 9 7 2.7931 -3.5015 -0.0004 10 6 2.3647 -4.9024 -0.0063 11 6 3.5765 -5.7982 -0.0119 12 8 4.6885 -5.3142 -0.0115 13 7 3.4244 -7.1374 -0.0174 14 6 4.6024 -8.0084 -0.0234 15 1 5.3962 -7.5500 0.5666 16 6 5.0846 -8.2042 -1.4622 17 6 4.2365 -9.3653 0.5812 18 6 3.8737 -9.1853 2.0566 19 7 3.5227 -10.4847 2.6352 20 6 3.1614 -10.5720 3.9531 21 1 3.1347 -9.6831 4.5658 22 6 2.8283 -11.8031 4.5012 23 7 2.8604 -12.8864 3.7545 24 14 2.3347 -11.9222 6.2989 25 1 0.8649 -11.7493 6.4211 26 1 2.7226 -13.2531 6.8316 27 1 3.0243 -10.8591 7.0732 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 4.4172 1.4286 -0.0003 32 1 4.5928 -1.1838 0.0096 33 1 3.7383 -3.2833 -0.0009 34 1 1.7681 -5.1037 0.8835 35 1 1.7660 -5.0955 -0.8964 36 1 2.5351 -7.5246 -0.0181 37 1 4.2908 -8.6626 -2.0521 38 1 5.3453 -7.2375 -1.8928 39 1 5.9613 -8.8519 -1.4666 40 1 3.3841 -9.7836 0.0457 41 1 5.0867 -10.0422 0.4960 42 1 4.7262 -8.7671 2.5919 43 1 3.0235 -8.5085 2.1416 44 1 3.5471 -11.2831 2.0850 45 1 2.6280 -13.7467 4.1375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753968720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:11 Heat of formation + Delta-G solvation = -83.896045 kcal Electronic energy + Delta-G solvation = -26219.946292 eV Core-core repulsion = 22238.080693 eV Total energy + Delta-G solvation = -3981.865599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55906 -41.28953 -40.18704 -37.95862 -36.18106 -35.55979 -34.07590 -33.65419 -32.80614 -32.28145 -29.53909 -29.14803 -27.51230 -25.87858 -24.32308 -23.32401 -22.42731 -21.82284 -21.57875 -21.02402 -19.33626 -19.08697 -17.83823 -17.61765 -17.39498 -16.92981 -16.80816 -16.67058 -16.40412 -15.69582 -15.54877 -15.45230 -15.18696 -14.98554 -14.62371 -14.30523 -14.20079 -14.05086 -13.94955 -13.79065 -13.75822 -13.38802 -13.10798 -12.89824 -12.89073 -12.69252 -12.39211 -12.27031 -12.00457 -11.93132 -11.64911 -11.21994 -11.07980 -10.94841 -10.88443 -10.32696 -10.11680 -9.55214 -9.01614 -7.97251 -5.26007 0.28524 1.09651 1.46709 1.46728 1.47907 1.56398 1.66291 1.94476 2.24475 2.43879 2.54381 3.36443 3.51874 3.59404 3.67363 3.79546 3.87745 4.05280 4.16921 4.29094 4.32035 4.37806 4.39116 4.57012 4.62272 4.62806 4.65822 4.74876 4.77779 4.85845 4.87380 4.98937 5.14091 5.20876 5.25567 5.27986 5.34251 5.36072 5.47496 5.51808 6.00588 6.25559 6.39466 6.44526 7.06406 7.09688 7.32148 8.07835 8.31209 9.25949 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.002135 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.276095 B =13110.599175 C =14292.646539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 O -0.181 6.181 4 C -0.028 4.028 5 C -0.202 4.202 6 C -0.275 4.275 7 C 0.590 3.410 8 O -0.570 6.570 9 N -0.708 5.708 10 C 0.103 3.897 11 C 0.515 3.485 12 O -0.571 6.571 13 N -0.706 5.706 14 C 0.153 3.847 15 H 0.073 0.927 16 C -0.153 4.153 17 C -0.120 4.120 18 C 0.152 3.848 19 N -0.746 5.746 20 C -0.248 4.248 21 H 0.071 0.929 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.972 3.028 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.272 1.272 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.172 0.828 33 H 0.414 0.586 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.007 0.993 43 H 0.024 0.976 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 26.894 -13.743 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 O -0.077 6.077 4 C -0.093 4.093 5 C -0.221 4.221 6 C -0.279 4.279 7 C 0.380 3.620 8 O -0.452 6.452 9 N -0.362 5.362 10 C -0.024 4.024 11 C 0.301 3.699 12 O -0.451 6.451 13 N -0.358 5.358 14 C 0.048 3.952 15 H 0.091 0.909 16 C -0.211 4.211 17 C -0.158 4.158 18 C 0.026 3.974 19 N -0.389 5.389 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.801 3.199 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.197 1.197 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.265 0.735 32 H 0.189 0.811 33 H 0.253 0.747 34 H 0.124 0.876 35 H 0.134 0.866 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.025 0.975 43 H 0.042 0.958 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.345 27.361 -13.568 30.542 hybrid contribution 0.108 -1.131 0.953 1.483 sum 0.453 26.230 -12.615 29.110 Atomic orbital electron populations 1.20655 0.82689 1.05455 1.05028 1.23165 0.95005 0.83118 0.96750 1.83803 1.18036 1.34662 1.71180 1.24665 0.83496 0.96724 1.04376 1.23152 0.96242 0.95464 1.07241 1.21174 0.95100 0.93008 1.18651 1.17380 0.84886 0.84466 0.75257 1.90747 1.17462 1.84572 1.52373 1.45451 1.11043 1.04639 1.75041 1.21125 0.94630 0.80548 1.06125 1.20603 0.90493 0.83480 0.75329 1.90667 1.27425 1.75335 1.51684 1.45976 1.11083 1.05169 1.73601 1.20855 0.87641 0.89127 0.97546 0.90902 1.22083 1.02280 1.02078 0.94689 1.21910 1.03009 0.96344 0.94517 1.20790 0.96443 0.87366 0.92801 1.42565 1.81900 1.05414 1.09021 1.19587 1.36613 0.93447 0.88296 0.91091 1.25553 1.03431 0.95372 1.02302 1.69793 1.56686 0.98406 1.36835 0.85166 0.77934 0.76720 0.80094 1.21219 1.22002 1.19745 0.88590 0.88172 0.88665 0.73522 0.81105 0.74717 0.87602 0.86580 0.74823 0.91134 0.92856 0.90582 0.90210 0.90088 0.97472 0.95756 0.79221 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.89 71.23 0.70 -0.48 16 2 C 0.07 1.35 7.37 25.26 0.19 1.53 16 3 O -0.18 -2.88 10.52 4.42 0.05 -2.84 16 4 C -0.03 -0.32 12.03 66.89 0.80 0.48 16 5 C -0.20 -3.08 10.60 23.65 0.25 -2.83 16 6 C -0.27 -5.67 6.31 -18.99 -0.12 -5.79 16 7 C 0.59 14.10 7.81 86.65 0.68 14.78 16 8 O -0.57 -16.09 14.85 -4.07 -0.06 -16.15 16 9 N -0.71 -15.08 5.52 -470.15 -2.60 -17.68 16 10 C 0.10 2.01 6.15 85.63 0.53 2.54 16 11 C 0.51 11.69 7.86 87.66 0.69 12.38 16 12 O -0.57 -16.25 15.33 -3.01 -0.05 -16.30 16 13 N -0.71 -14.86 4.53 -442.53 -2.00 -16.86 16 14 C 0.15 3.61 2.57 44.99 0.12 3.73 16 15 H 0.07 2.01 7.58 -2.38 -0.02 1.99 16 16 C -0.15 -2.99 9.48 71.98 0.68 -2.31 16 17 C -0.12 -3.34 4.87 30.59 0.15 -3.19 16 18 C 0.15 5.82 6.15 86.38 0.53 6.35 16 19 N -0.75 -37.29 5.60 -343.43 -1.92 -39.21 16 20 C -0.25 -13.86 9.99 84.04 0.84 -13.02 16 21 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.63 13.06 21.65 0.28 -58.34 16 24 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 1.68 6.49 -2.39 -0.02 1.67 16 31 H 0.25 0.54 8.06 -2.91 -0.02 0.52 16 32 H 0.17 2.02 7.74 -2.91 -0.02 2.00 16 33 H 0.41 8.46 6.61 -92.71 -0.61 7.85 16 34 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.41 7.26 8.60 -92.71 -0.80 6.46 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 43 H 0.02 0.91 7.75 -2.39 -0.02 0.89 16 44 H 0.38 19.70 7.67 -92.71 -0.71 18.98 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.81 384.93 1.14 -73.66 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: -1.09 Total: 35.16 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 6.50 Total: 10.39 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -6.24 Total: -132.10 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.06 Total: -35.28 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -74.81 1.14 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753968720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.232 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds