Wall clock time and date at job start Tue Mar 31 2020 13:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46912 * 2 1 4 4 C 1.46506 * 119.99523 * 90.00270 * 3 2 1 5 5 C 1.52999 * 109.47156 * 269.99653 * 4 3 2 6 6 N 1.46897 * 109.47098 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00147 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.38227 * 119.62059 * 95.01860 * 8 7 6 10 10 C 1.38627 * 119.15702 * 179.74122 * 9 8 7 11 11 C 1.38669 * 118.42389 * 0.47826 * 10 9 8 12 12 C 1.38186 * 119.16143 * 359.49762 * 11 10 9 13 13 N 1.31856 * 119.61137 * 274.99289 * 8 7 6 14 14 C 1.34772 * 120.00601 * 269.99997 * 3 2 1 15 15 O 1.21279 * 120.00670 * 180.02562 * 14 3 2 16 16 C 1.50700 * 119.99622 * 0.02562 * 14 3 2 17 17 S 1.81002 * 109.47118 * 179.97438 * 16 14 3 18 18 C 1.76197 * 100.00041 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00351 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00035 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47323 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47234 * 119.99732 * 22 20 18 25 25 H 1.48503 * 109.46753 * 239.99621 * 22 20 18 26 26 H 1.08994 * 109.46636 * 299.99592 * 1 2 3 27 27 H 1.08997 * 109.47243 * 59.99987 * 1 2 3 28 28 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46812 * 240.00334 * 2 1 3 30 30 H 1.08998 * 109.46997 * 120.00753 * 2 1 3 31 31 H 1.09001 * 109.46710 * 149.99828 * 4 3 2 32 32 H 1.09003 * 109.47272 * 30.00384 * 4 3 2 33 33 H 1.08996 * 109.46739 * 60.00574 * 5 4 3 34 34 H 1.08999 * 109.47168 * 300.00341 * 5 4 3 35 35 H 1.00904 * 111.00094 * 303.95467 * 6 5 4 36 36 H 1.08997 * 109.47637 * 59.99665 * 7 6 5 37 37 H 1.09003 * 109.46634 * 299.99663 * 7 6 5 38 38 H 1.07998 * 120.41916 * 359.95342 * 9 8 7 39 39 H 1.08008 * 120.78688 * 180.22921 * 10 9 8 40 40 H 1.08002 * 120.42244 * 179.78279 * 11 10 9 41 41 H 1.07996 * 119.61757 * 180.25243 * 12 11 10 42 42 H 1.09001 * 109.47349 * 299.99971 * 16 14 3 43 43 H 1.09005 * 109.47018 * 59.99933 * 16 14 3 44 44 H 0.97005 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 0.9875 2.7930 1.7106 6 7 1.2326 3.4858 2.9825 7 6 0.0272 4.1906 3.4388 8 6 0.3166 4.8883 4.7429 9 6 0.6938 6.2181 4.7372 10 6 0.9525 6.8519 5.9427 11 6 0.8314 6.1185 7.1133 12 6 0.4493 4.7925 7.0407 13 7 0.2066 4.2232 5.8761 14 6 2.2430 2.0166 -1.1671 15 8 2.6477 3.1599 -1.1671 16 6 1.9913 1.3065 -2.4722 17 16 2.3828 2.4157 -3.8479 18 6 2.0082 1.3602 -5.2081 19 1 1.6533 0.3557 -5.0305 20 6 2.1702 1.8192 -6.5080 21 7 2.6032 3.0432 -6.7245 22 14 1.7724 0.7004 -7.9500 23 1 1.3067 -0.6151 -7.4422 24 1 0.7046 1.3187 -8.7764 25 1 2.9901 0.5081 -8.7779 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.0644 2.7984 1.1385 32 1 2.5507 1.3450 2.0284 33 1 0.1857 2.0663 1.8409 34 1 0.6994 3.5196 0.9510 35 1 1.5635 2.8432 3.6865 36 1 -0.7810 3.4734 3.5816 37 1 -0.2682 4.9267 2.6910 38 1 0.7824 6.7574 3.8058 39 1 1.2454 7.8912 5.9692 40 1 1.0286 6.5791 8.0701 41 1 0.3487 4.2156 7.9481 42 1 2.6212 0.4188 -2.5302 43 1 0.9432 1.0127 -2.5298 44 1 2.7161 3.3642 -7.6329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754034675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:52 Heat of formation + Delta-G solvation = 0.778385 kcal Electronic energy + Delta-G solvation = -23746.030182 eV Core-core repulsion = 20210.589213 eV Total energy + Delta-G solvation = -3535.440969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.49456 -39.61233 -36.76976 -35.54182 -32.85861 -32.42176 -32.38354 -30.79170 -29.73934 -27.94051 -25.57962 -25.23374 -23.82143 -23.30115 -22.29510 -22.02020 -19.11146 -17.69449 -17.33471 -16.80370 -16.56739 -16.26432 -15.88716 -15.36425 -15.27789 -14.85726 -14.79434 -14.11973 -13.95200 -13.79478 -13.58593 -13.49669 -13.32110 -13.12365 -12.88269 -12.66850 -12.51046 -12.16660 -11.89203 -11.70563 -11.64384 -11.33412 -11.06903 -11.00156 -10.87433 -10.73073 -10.20795 -9.80244 -9.78116 -9.40686 -9.30962 -9.06558 -8.68082 -8.54241 -8.20228 -6.48628 -6.20877 -3.91094 0.75828 0.95825 2.89319 3.08624 3.21829 3.25410 3.30987 3.41471 3.61436 3.90513 4.21022 4.28299 4.41781 4.52392 4.74131 4.75950 4.80619 4.92488 4.97261 5.07827 5.13919 5.14727 5.21894 5.28136 5.31787 5.40761 5.41267 5.46181 5.56109 5.69037 5.77588 5.82883 5.87022 5.90178 5.94700 6.01458 6.08039 6.23954 6.35545 6.60538 6.78031 7.11015 7.56871 7.60925 7.65745 8.36253 8.59683 9.24543 10.86565 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.678942 B =13629.244225 C =14328.047019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.620 5.620 4 C 0.122 3.878 5 C 0.044 3.956 6 N -0.679 5.679 7 C 0.110 3.890 8 C 0.132 3.868 9 C -0.149 4.149 10 C -0.076 4.076 11 C -0.176 4.176 12 C 0.097 3.903 13 N -0.483 5.483 14 C 0.533 3.467 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.062 6.062 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.343 0.657 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -0.391 26.725 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.002 4.002 5 C -0.086 4.086 6 N -0.311 5.311 7 C -0.019 4.019 8 C -0.006 4.006 9 C -0.169 4.169 10 C -0.103 4.103 11 C -0.196 4.196 12 C -0.060 4.060 13 N -0.193 5.193 14 C 0.321 3.679 15 O -0.385 6.385 16 C -0.301 4.301 17 S 0.164 5.836 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.161 0.839 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.172 0.828 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.817 1.115 26.239 26.701 hybrid contribution -1.089 -1.888 -0.474 2.230 sum -5.906 -0.773 25.765 26.445 Atomic orbital electron populations 1.22308 0.96110 1.02185 1.02703 1.21556 0.94415 0.82505 1.03204 1.47958 1.67920 1.14164 1.05550 1.21248 0.97621 0.96602 0.84734 1.22456 0.97450 0.97175 0.91524 1.60371 1.31146 1.33855 1.05714 1.20780 0.91976 0.97770 0.91385 1.21136 0.94708 0.91350 0.93417 1.22026 0.99744 0.95796 0.99357 1.21639 0.95911 1.00374 0.92330 1.22152 1.01913 0.96077 0.99468 1.22713 0.94924 0.92718 0.95631 1.67469 1.14327 1.39186 0.98330 1.20343 0.76435 0.86530 0.84578 1.90707 1.43627 1.17402 1.86754 1.23585 1.04711 1.04497 0.97281 1.85403 1.86844 1.17946 0.93373 1.22900 1.51594 1.01512 0.92216 0.90917 1.24994 0.94706 0.95543 0.98381 1.70031 1.43057 1.15628 1.21530 0.86126 0.78171 0.80087 0.81160 1.19623 1.20585 1.20575 0.92476 0.91874 0.91648 0.89871 0.90702 0.88932 0.91172 0.94736 0.90081 0.83928 0.93271 0.89156 0.84414 0.84736 0.84865 0.82833 0.89338 0.89279 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 37.16 0.38 -1.36 16 2 C 0.11 1.14 5.98 -4.04 -0.02 1.12 16 3 N -0.62 -8.67 2.47 -173.68 -0.43 -9.10 16 4 C 0.12 1.49 5.71 -4.04 -0.02 1.47 16 5 C 0.04 0.50 6.01 -3.83 -0.02 0.48 16 6 N -0.68 -7.15 6.49 -115.06 -0.75 -7.90 16 7 C 0.11 1.08 5.99 -4.97 -0.03 1.05 16 8 C 0.13 1.32 6.29 -82.58 -0.52 0.80 16 9 C -0.15 -1.31 9.72 -39.44 -0.38 -1.69 16 10 C -0.08 -0.55 10.18 -39.28 -0.40 -0.95 16 11 C -0.18 -1.18 10.11 -39.44 -0.40 -1.58 16 12 C 0.10 0.77 11.18 -17.55 -0.20 0.58 16 13 N -0.48 -4.95 10.27 -9.47 -0.10 -5.05 16 14 C 0.53 10.13 7.69 -10.99 -0.08 10.05 16 15 O -0.51 -11.70 15.44 5.56 0.09 -11.62 16 16 C -0.15 -3.06 4.71 36.01 0.17 -2.89 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.21 9.50 30.94 0.29 -14.92 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.06 0.54 6.26 -51.93 -0.33 0.21 16 27 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.92 6.44 -51.92 -0.33 0.58 16 30 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 31 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 32 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 33 H 0.03 0.36 6.26 -51.93 -0.33 0.04 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.34 3.36 8.72 -39.29 -0.34 3.02 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 43 H 0.09 1.69 7.18 -51.91 -0.37 1.32 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -35.00 381.67 -9.86 -44.85 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.59 Total: 1.91 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -1.33 Total: -5.87 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.54 Total: -47.51 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.00 -9.86 -44.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754034675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.633 kcal (2) G-P(sol) polarization free energy of solvation -34.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds