Wall clock time and date at job start Tue Mar 31 2020 13:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46912 * 2 1 4 4 C 1.46506 * 119.99523 * 90.00270 * 3 2 1 5 5 C 1.52999 * 109.47156 * 269.99653 * 4 3 2 6 6 N 1.46897 * 109.47098 * 180.02562 * 5 4 3 7 7 C 1.46898 * 111.00147 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.38227 * 119.62059 * 95.01860 * 8 7 6 10 10 C 1.38627 * 119.15702 * 179.74122 * 9 8 7 11 11 C 1.38669 * 118.42389 * 0.47826 * 10 9 8 12 12 C 1.38186 * 119.16143 * 359.49762 * 11 10 9 13 13 N 1.31856 * 119.61137 * 274.99289 * 8 7 6 14 14 C 1.34772 * 120.00601 * 269.99997 * 3 2 1 15 15 O 1.21279 * 120.00670 * 180.02562 * 14 3 2 16 16 C 1.50700 * 119.99622 * 0.02562 * 14 3 2 17 17 S 1.81002 * 109.47118 * 179.97438 * 16 14 3 18 18 C 1.76197 * 100.00041 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00351 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00035 * 180.02562 * 18 17 16 21 21 N 1.31627 * 119.99816 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47323 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47234 * 119.99732 * 22 20 18 25 25 H 1.48503 * 109.46753 * 239.99621 * 22 20 18 26 26 H 1.08994 * 109.46636 * 299.99592 * 1 2 3 27 27 H 1.08997 * 109.47243 * 59.99987 * 1 2 3 28 28 H 1.08999 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46812 * 240.00334 * 2 1 3 30 30 H 1.08998 * 109.46997 * 120.00753 * 2 1 3 31 31 H 1.09001 * 109.46710 * 149.99828 * 4 3 2 32 32 H 1.09003 * 109.47272 * 30.00384 * 4 3 2 33 33 H 1.08996 * 109.46739 * 60.00574 * 5 4 3 34 34 H 1.08999 * 109.47168 * 300.00341 * 5 4 3 35 35 H 1.00904 * 111.00094 * 303.95467 * 6 5 4 36 36 H 1.08997 * 109.47637 * 59.99665 * 7 6 5 37 37 H 1.09003 * 109.46634 * 299.99663 * 7 6 5 38 38 H 1.07998 * 120.41916 * 359.95342 * 9 8 7 39 39 H 1.08008 * 120.78688 * 180.22921 * 10 9 8 40 40 H 1.08002 * 120.42244 * 179.78279 * 11 10 9 41 41 H 1.07996 * 119.61757 * 180.25243 * 12 11 10 42 42 H 1.09001 * 109.47349 * 299.99971 * 16 14 3 43 43 H 1.09005 * 109.47018 * 59.99933 * 16 14 3 44 44 H 0.97005 * 120.00003 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 1.2688 5 6 0.9875 2.7930 1.7106 6 7 1.2326 3.4858 2.9825 7 6 0.0272 4.1906 3.4388 8 6 0.3166 4.8883 4.7429 9 6 0.6938 6.2181 4.7372 10 6 0.9525 6.8519 5.9427 11 6 0.8314 6.1185 7.1133 12 6 0.4493 4.7925 7.0407 13 7 0.2066 4.2232 5.8761 14 6 2.2430 2.0166 -1.1671 15 8 2.6477 3.1599 -1.1671 16 6 1.9913 1.3065 -2.4722 17 16 2.3828 2.4157 -3.8479 18 6 2.0082 1.3602 -5.2081 19 1 1.6533 0.3557 -5.0305 20 6 2.1702 1.8192 -6.5080 21 7 2.6032 3.0432 -6.7245 22 14 1.7724 0.7004 -7.9500 23 1 1.3067 -0.6151 -7.4422 24 1 0.7046 1.3187 -8.7764 25 1 2.9901 0.5081 -8.7779 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.0644 2.7984 1.1385 32 1 2.5507 1.3450 2.0284 33 1 0.1857 2.0663 1.8409 34 1 0.6994 3.5196 0.9510 35 1 1.5635 2.8432 3.6865 36 1 -0.7810 3.4734 3.5816 37 1 -0.2682 4.9267 2.6910 38 1 0.7824 6.7574 3.8058 39 1 1.2454 7.8912 5.9692 40 1 1.0286 6.5791 8.0701 41 1 0.3487 4.2156 7.9481 42 1 2.6212 0.4188 -2.5302 43 1 0.9432 1.0127 -2.5298 44 1 2.7161 3.3642 -7.6329 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754034675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:51 Heat of formation + Delta-G solvation = -23.371926 kcal Electronic energy + Delta-G solvation = -23747.077418 eV Core-core repulsion = 20210.589213 eV Total energy + Delta-G solvation = -3536.488205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14030 -40.94145 -37.83278 -36.64716 -34.58564 -33.52658 -33.12392 -31.68432 -31.12599 -29.01831 -27.66625 -26.17108 -24.41952 -24.33286 -23.26687 -22.70309 -20.56896 -19.50891 -18.21227 -18.00423 -17.27025 -17.23345 -16.88465 -16.81541 -16.49374 -16.16491 -16.04813 -15.49810 -15.06347 -14.83733 -14.60186 -14.49985 -14.27817 -14.20071 -14.04509 -13.73379 -13.41477 -13.40373 -13.18183 -12.94337 -12.89113 -12.60376 -12.57470 -12.42632 -12.27465 -11.82039 -11.66236 -11.15718 -10.88332 -10.80919 -10.43365 -10.25800 -10.01263 -9.77971 -9.47086 -8.67058 -8.34649 -6.12852 0.14866 0.36775 1.25808 1.41287 1.45701 1.56446 1.58923 2.06686 2.27321 2.77273 2.99437 3.21288 3.26994 3.51673 3.67386 3.75781 3.99490 4.02969 4.05798 4.14404 4.20347 4.21109 4.25443 4.39035 4.40410 4.47418 4.48129 4.55289 4.60776 4.76796 4.81515 4.84881 4.86770 4.97755 5.03119 5.25670 5.29949 5.36385 5.42002 5.57898 5.77208 5.86959 6.19979 6.26909 6.33432 7.03075 7.06557 7.16192 8.74844 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.002054 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.678942 B =13629.244225 C =14328.047019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.122 3.878 5 C 0.057 3.943 6 N -0.683 5.683 7 C 0.115 3.885 8 C 0.112 3.888 9 C -0.165 4.165 10 C -0.080 4.080 11 C -0.170 4.170 12 C 0.085 3.915 13 N -0.507 5.507 14 C 0.532 3.468 15 O -0.561 6.561 16 C -0.123 4.123 17 S -0.154 6.154 18 C -0.544 4.544 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.349 0.651 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.178 0.822 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -2.603 28.676 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.338 5.338 4 C -0.001 4.001 5 C -0.073 4.073 6 N -0.316 5.316 7 C -0.015 4.015 8 C -0.025 4.025 9 C -0.185 4.185 10 C -0.106 4.106 11 C -0.190 4.190 12 C -0.072 4.072 13 N -0.217 5.217 14 C 0.319 3.681 15 O -0.439 6.439 16 C -0.274 4.274 17 S 0.074 5.926 18 C -0.692 4.692 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.199 1.199 25 H -0.199 1.199 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.182 0.818 41 H 0.195 0.805 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.540 -1.140 28.238 28.799 hybrid contribution -0.880 -1.205 -0.863 1.724 sum -6.421 -2.345 27.375 28.216 Atomic orbital electron populations 1.22267 0.95269 1.03510 1.01819 1.21917 0.95066 0.80341 1.05067 1.47939 1.66061 1.15297 1.04508 1.21369 0.97161 0.97055 0.84480 1.22219 0.97360 0.96558 0.91200 1.60304 1.31812 1.33963 1.05474 1.20721 0.91553 0.97586 0.91633 1.21126 0.96071 0.91934 0.93381 1.22175 1.00307 0.95696 1.00347 1.21994 0.95141 1.01576 0.91912 1.22516 1.00307 0.95576 1.00596 1.23222 0.94519 0.93723 0.95718 1.67441 1.15288 1.40012 0.99005 1.20147 0.76464 0.85926 0.85546 1.90690 1.46334 1.19458 1.87464 1.23398 1.05833 1.03066 0.95084 1.85593 1.87613 1.22100 0.97329 1.23220 1.51614 1.01743 0.92616 0.89929 1.26142 0.94194 0.97185 1.01709 1.70196 1.44298 1.17876 1.22403 0.84900 0.78091 0.78189 0.76729 1.17937 1.19950 1.19912 0.91874 0.94255 0.89204 0.89921 0.86997 0.91704 0.87303 0.93150 0.93335 0.83189 0.93253 0.89620 0.84332 0.82394 0.81796 0.80495 0.87507 0.87694 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.24 71.98 0.74 -2.19 16 2 C 0.10 1.79 5.98 86.38 0.52 2.31 16 3 N -0.60 -16.19 2.47 -821.79 -2.03 -18.22 16 4 C 0.12 2.87 5.71 86.38 0.49 3.37 16 5 C 0.06 1.28 6.01 86.30 0.52 1.80 16 6 N -0.68 -14.26 6.49 -517.94 -3.36 -17.62 16 7 C 0.11 2.27 5.99 85.56 0.51 2.79 16 8 C 0.11 2.23 6.29 42.55 0.27 2.50 16 9 C -0.16 -2.87 9.72 22.36 0.22 -2.65 16 10 C -0.08 -1.04 10.18 22.47 0.23 -0.81 16 11 C -0.17 -1.90 10.11 22.36 0.23 -1.67 16 12 C 0.09 1.21 11.18 84.67 0.95 2.15 16 13 N -0.51 -10.00 10.27 -183.88 -1.89 -11.89 16 14 C 0.53 20.48 7.69 87.66 0.67 21.15 16 15 O -0.56 -26.95 15.44 -3.03 -0.05 -27.00 16 16 C -0.12 -5.02 4.71 71.24 0.34 -4.68 16 17 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 18 C -0.54 -31.34 9.50 67.95 0.65 -30.69 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 22 Si 1.00 43.82 29.55 68.60 2.03 45.84 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H 0.06 1.01 6.26 -2.39 -0.01 1.00 16 27 H 0.04 0.87 7.22 -2.39 -0.02 0.85 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.57 6.44 -2.38 -0.02 1.56 16 30 H 0.11 1.33 7.89 -2.39 -0.02 1.31 16 31 H 0.06 1.94 7.42 -2.39 -0.02 1.92 16 32 H 0.11 1.75 7.89 -2.39 -0.02 1.73 16 33 H 0.05 0.98 6.26 -2.39 -0.01 0.97 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.35 6.50 8.72 -89.69 -0.78 5.71 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.72 8.04 -2.39 -0.02 1.70 16 38 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 40 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 41 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.11 3.95 7.40 -2.39 -0.02 3.93 16 43 H 0.10 3.93 7.18 -2.39 -0.02 3.92 16 44 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -80.02 381.67 0.83 -79.19 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.22 Total: 21.13 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 6.79 Total: -5.45 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -7.00 Total: -103.88 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.05 Total: -27.00 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -80.02 0.83 -79.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754034675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.820 kcal (2) G-P(sol) polarization free energy of solvation -80.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds