Wall clock time and date at job start Tue Mar 31 2020 13:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47155 * 2 1 4 4 C 1.46496 * 120.00128 * 270.00171 * 3 2 1 5 5 C 1.53002 * 109.47356 * 269.99776 * 4 3 2 6 6 N 1.46496 * 109.47356 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99944 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00318 * 0.02562 * 7 6 5 9 9 C 1.38815 * 119.99743 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00310 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99947 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46863 * 60.00024 * 11 9 7 13 13 H 1.48497 * 109.47157 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47026 * 300.00190 * 11 9 7 15 15 C 1.34777 * 119.99589 * 90.00509 * 3 2 1 16 16 O 1.21285 * 119.99764 * 179.97438 * 15 3 2 17 17 C 1.50702 * 120.00224 * 359.97438 * 15 3 2 18 18 C 1.50700 * 109.47043 * 180.02562 * 17 15 3 19 19 C 1.33644 * 122.74710 * 85.03045 * 18 17 15 20 20 S 1.76200 * 107.92352 * 179.73069 * 19 18 17 21 21 C 1.70979 * 90.28153 * 359.97438 * 20 19 18 22 22 C 1.50701 * 124.91569 * 180.02562 * 21 20 19 23 23 C 1.53002 * 117.49646 * 8.60029 * 22 21 20 24 24 C 1.53003 * 117.49678 * 299.97555 * 22 21 20 25 25 N 1.29028 * 110.16576 * 0.02562 * 21 20 19 26 26 H 1.08999 * 109.47016 * 59.99684 * 1 2 3 27 27 H 1.08997 * 109.46954 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46717 * 299.99924 * 1 2 3 29 29 H 1.09001 * 109.46843 * 240.00586 * 2 1 3 30 30 H 1.08994 * 109.47664 * 120.00587 * 2 1 3 31 31 H 1.09002 * 109.47604 * 29.99995 * 4 3 2 32 32 H 1.09007 * 109.47117 * 149.99836 * 4 3 2 33 33 H 1.09002 * 109.46942 * 300.00624 * 5 4 3 34 34 H 1.08999 * 109.46643 * 59.99906 * 5 4 3 35 35 H 0.97002 * 119.99671 * 0.02562 * 6 5 4 36 36 H 0.96997 * 120.00188 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46565 * 60.00220 * 17 15 3 38 38 H 1.08999 * 109.46915 * 300.00707 * 17 15 3 39 39 H 1.08001 * 126.03803 * 359.72486 * 19 18 17 40 40 H 1.08994 * 115.54881 * 154.30676 * 22 21 20 41 41 H 1.08991 * 117.50122 * 359.97438 * 23 22 21 42 42 H 1.08994 * 117.49679 * 145.02323 * 23 22 21 43 43 H 1.08995 * 117.49838 * 214.97384 * 24 22 21 44 44 H 1.09001 * 117.50034 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 7 3.9519 2.5227 -2.9788 7 6 5.1842 2.4507 -3.5714 8 1 5.9760 1.8841 -3.1040 9 6 5.4158 3.1060 -4.7730 10 7 4.4512 3.7970 -5.3424 11 14 7.0968 3.0073 -5.5819 12 1 7.4207 1.5888 -5.8786 13 1 7.0844 3.7866 -6.8459 14 1 8.1212 3.5675 -4.6644 15 6 2.2431 2.0165 1.1673 16 8 2.6478 3.1598 1.1673 17 6 1.9915 1.3062 2.4723 18 6 2.3175 2.2296 3.6178 19 6 1.4428 3.1156 4.1036 20 16 2.2222 3.9762 5.4290 21 6 3.6464 3.0586 5.1985 22 6 4.9062 3.2021 6.0129 23 6 4.8481 4.0976 7.2521 24 6 5.6011 4.5652 6.0049 25 7 3.4863 2.2254 4.2264 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5817 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 4.3883 2.2156 -0.9507 34 1 3.8745 0.7623 -1.8408 35 1 3.2408 3.0319 -3.3984 36 1 4.6129 4.2546 -6.1822 37 1 2.6214 0.4185 2.5301 38 1 0.9434 1.0123 2.5299 39 1 0.4361 3.2758 3.7468 40 1 5.5381 2.3154 6.0616 41 1 3.8989 4.5832 7.4781 42 1 5.4418 3.8000 8.1164 43 1 6.6901 4.5752 6.0488 44 1 5.1473 5.3580 5.4103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754070769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:54 Heat of formation + Delta-G solvation = 24.450214 kcal Electronic energy + Delta-G solvation = -24389.010040 eV Core-core repulsion = 20854.595558 eV Total energy + Delta-G solvation = -3534.414482 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53066 -40.43598 -38.16754 -37.49639 -36.39986 -33.86146 -32.90128 -31.54104 -30.01372 -28.53993 -26.69157 -25.62772 -24.31449 -23.47852 -23.37062 -22.26783 -20.95484 -20.06295 -19.20073 -18.69428 -18.18593 -17.46517 -17.10885 -16.68560 -16.27976 -15.82863 -15.57124 -15.32555 -15.15238 -15.12975 -14.83111 -14.73579 -14.40155 -14.23106 -13.77749 -13.36765 -13.13030 -13.08990 -12.92643 -12.76602 -12.66818 -12.60020 -12.33315 -12.25561 -12.19935 -11.91632 -11.88101 -11.82793 -11.53071 -11.01345 -10.94179 -10.66989 -10.33166 -9.75301 -9.61700 -9.10678 -8.00871 -5.32159 -0.31536 0.36579 0.70239 1.43169 1.47939 1.52009 1.54820 1.59677 2.08029 2.53419 2.75751 3.02703 3.31811 3.56084 3.70755 3.78703 3.95734 3.97833 4.04598 4.12571 4.17301 4.18557 4.21005 4.36712 4.41186 4.46140 4.52225 4.60076 4.68735 4.72301 4.87189 4.89797 4.97122 5.01743 5.05178 5.06928 5.13637 5.13828 5.39662 5.41851 5.55399 6.20418 6.39459 6.76341 7.14701 7.26398 7.97401 8.23723 9.22318 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.002834 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.716699 B = 9877.372995 C =11568.320256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.603 5.603 4 C 0.125 3.875 5 C 0.150 3.850 6 N -0.742 5.742 7 C -0.255 4.255 8 H 0.071 0.929 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.510 3.490 16 O -0.584 6.584 17 C -0.056 4.056 18 C 0.068 3.932 19 C -0.257 4.257 20 S 0.157 5.843 21 C 0.065 3.935 22 C -0.110 4.110 23 C -0.143 4.143 24 C -0.165 4.165 25 N -0.500 5.500 26 H 0.047 0.953 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.056 0.944 33 H -0.007 1.007 34 H 0.030 0.970 35 H 0.376 0.624 36 H 0.255 0.745 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.195 0.805 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 -6.996 27.901 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.029 4.029 3 N -0.336 5.336 4 C 0.002 3.998 5 C 0.023 3.977 6 N -0.386 5.386 7 C -0.386 4.386 8 H 0.089 0.911 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.299 3.701 16 O -0.463 6.463 17 C -0.098 4.098 18 C -0.064 4.064 19 C -0.396 4.396 20 S 0.413 5.587 21 C -0.212 4.212 22 C -0.132 4.132 23 C -0.181 4.181 24 C -0.204 4.204 25 N -0.215 5.215 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.011 0.989 34 H 0.048 0.952 35 H 0.208 0.792 36 H 0.063 0.937 37 H 0.142 0.858 38 H 0.166 0.834 39 H 0.213 0.787 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.109 -6.034 28.432 30.459 hybrid contribution 0.540 -0.079 -1.964 2.039 sum -8.569 -6.114 26.468 28.484 Atomic orbital electron populations 1.22185 0.93996 1.03824 1.02365 1.21989 0.95856 0.79974 1.05059 1.48016 1.65274 1.15769 1.04520 1.21271 0.95612 0.97505 0.85460 1.20933 0.95015 0.95138 0.86664 1.42377 1.12068 1.61124 1.23003 1.19549 0.90311 1.25994 1.02777 0.91107 1.25643 1.01871 1.00193 0.98741 1.69808 1.33737 1.38263 1.19938 0.85143 0.78987 0.77882 0.77329 1.19806 1.21505 1.20710 1.21096 0.76446 0.86267 0.86263 1.90724 1.47023 1.20621 1.87944 1.20322 1.06616 0.97209 0.85610 1.19755 0.88365 0.99654 0.98633 1.27092 1.06911 1.02355 1.03264 1.83449 1.06216 1.38344 1.30727 1.26513 1.00511 0.96542 0.97624 1.20568 0.93829 0.97990 1.00768 1.23262 1.03028 1.00007 0.91807 1.23232 1.01243 0.94519 1.01412 1.65914 1.22655 1.24444 1.08479 0.93395 0.88870 0.91710 0.89773 0.87647 0.88644 0.92516 0.98923 0.95190 0.79229 0.93677 0.85750 0.83369 0.78743 0.84825 0.87980 0.84781 0.86023 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 71.98 0.74 -1.46 16 2 C 0.09 1.64 5.93 86.38 0.51 2.15 16 3 N -0.60 -17.06 2.47 -821.79 -2.03 -19.09 16 4 C 0.13 4.56 5.52 86.38 0.48 5.04 16 5 C 0.15 6.82 6.58 86.38 0.57 7.39 16 6 N -0.74 -41.10 5.60 -343.45 -1.92 -43.03 16 7 C -0.25 -15.26 9.99 84.03 0.84 -14.42 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -61.24 13.06 21.65 0.28 -60.96 16 11 Si 0.98 47.87 29.55 68.60 2.03 49.89 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 C 0.51 15.97 7.67 87.66 0.67 16.65 16 16 O -0.58 -24.97 15.61 -3.04 -0.05 -25.02 16 17 C -0.06 -1.20 4.67 29.10 0.14 -1.07 16 18 C 0.07 1.78 5.23 41.52 0.22 2.00 16 19 C -0.26 -5.79 11.14 66.78 0.74 -5.04 16 20 S 0.16 3.12 21.94 -56.49 -1.24 1.88 16 21 C 0.07 1.59 7.04 88.52 0.62 2.21 16 22 C -0.11 -2.03 6.33 -11.54 -0.07 -2.10 16 23 C -0.14 -1.65 10.01 30.60 0.31 -1.35 16 24 C -0.17 -2.58 10.23 30.60 0.31 -2.27 16 25 N -0.50 -14.70 10.53 -179.40 -1.89 -16.59 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.75 7.22 -2.39 -0.02 0.73 16 29 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 30 H 0.11 1.32 6.44 -2.39 -0.02 1.30 16 31 H 0.10 3.09 8.07 -2.39 -0.02 3.07 16 32 H 0.06 2.38 7.42 -2.38 -0.02 2.36 16 33 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.38 21.63 7.67 -92.71 -0.71 20.92 16 36 H 0.25 15.48 8.31 -92.71 -0.77 14.70 16 37 H 0.12 2.34 7.40 -2.39 -0.02 2.32 16 38 H 0.15 1.91 7.18 -2.39 -0.02 1.89 16 39 H 0.20 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.10 1.10 7.22 -2.39 -0.02 1.08 16 42 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -82.92 382.21 2.01 -80.91 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.30 Total: 28.14 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.54 Total: 3.86 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -5.56 Total: -139.67 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.05 Total: -25.02 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.89 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.24 Total: 1.88 kcal Total: -82.92 2.01 -80.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754070769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.356 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds