Wall clock time and date at job start Tue Mar 31 2020 14:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34175 * 125.44018 * 2 1 4 4 C 1.47018 * 105.95549 * 179.97438 * 3 2 1 5 5 C 1.47381 * 127.19027 * 179.97438 * 4 3 2 6 6 O 1.21611 * 120.00072 * 170.22950 * 5 4 3 7 7 N 1.34779 * 120.00314 * 350.22532 * 5 4 3 8 8 C 1.46503 * 119.99581 * 0.19744 * 7 5 4 9 9 C 1.46494 * 120.00463 * 180.19237 * 7 5 4 10 10 C 1.53000 * 109.46935 * 90.00090 * 9 7 5 11 11 C 1.53002 * 109.47263 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.47426 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00139 * 179.97438 * 12 11 10 14 14 C 1.50695 * 109.47074 * 179.97438 * 13 12 11 15 15 O 1.21297 * 120.00027 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00077 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99961 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99765 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99607 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00242 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99761 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47258 * 89.99908 * 21 19 17 23 23 H 1.48504 * 109.46895 * 210.00052 * 21 19 17 24 24 H 1.48498 * 109.46994 * 329.99541 * 21 19 17 25 25 C 1.36412 * 105.61689 * 0.02562 * 4 3 2 26 26 O 1.33645 * 108.39589 * 359.97438 * 25 4 3 27 27 H 1.09000 * 109.47156 * 89.99550 * 1 2 3 28 28 H 1.09004 * 109.46654 * 209.99412 * 1 2 3 29 29 H 1.08996 * 109.47026 * 329.99094 * 1 2 3 30 30 H 1.07998 * 127.02293 * 359.70753 * 3 2 1 31 31 H 1.08999 * 109.47369 * 83.98178 * 8 7 5 32 32 H 1.09003 * 109.46844 * 203.98464 * 8 7 5 33 33 H 1.09003 * 109.47065 * 323.98083 * 8 7 5 34 34 H 1.08998 * 109.47561 * 209.99844 * 9 7 5 35 35 H 1.09005 * 109.47182 * 330.00525 * 9 7 5 36 36 H 1.09001 * 109.47296 * 300.00304 * 10 9 7 37 37 H 1.08997 * 109.47643 * 60.00118 * 10 9 7 38 38 H 1.09001 * 109.46878 * 300.00150 * 11 10 9 39 39 H 1.08999 * 109.47635 * 59.99774 * 11 10 9 40 40 H 1.00900 * 111.00136 * 56.04030 * 12 11 10 41 41 H 1.09002 * 109.46851 * 299.99542 * 13 12 11 42 42 H 1.08997 * 109.46745 * 59.99554 * 13 12 11 43 43 H 0.96995 * 119.99594 * 0.02562 * 16 14 13 44 44 H 0.97006 * 119.99634 * 180.02562 * 20 19 17 45 45 H 1.08002 * 125.79691 * 180.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9024 1.4125 0.0003 6 8 5.9807 0.8794 0.1797 7 7 4.8337 2.7437 -0.1987 8 6 3.5343 3.3864 -0.4105 9 6 6.0581 3.5479 -0.2032 10 6 6.6144 3.6220 -1.6266 11 6 7.8935 4.4614 -1.6313 12 7 8.4273 4.5331 -2.9980 13 6 9.6583 5.3337 -3.0412 14 6 10.1754 5.3839 -4.4557 15 8 9.5772 4.8096 -5.3409 16 7 11.3022 6.0677 -4.7374 17 6 11.7724 6.1138 -6.0244 18 1 11.2397 5.6025 -6.8125 19 6 12.9343 6.8184 -6.3147 20 7 13.5821 7.4410 -5.3557 21 14 13.5746 6.8818 -8.0684 22 1 12.9862 8.0519 -8.7682 23 1 15.0542 7.0081 -8.0508 24 1 13.1927 5.6358 -8.7801 25 6 3.5790 -0.7583 0.0004 26 8 2.2852 -1.0935 0.0002 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 1.9596 2.1229 -0.0044 31 1 3.0712 3.5962 0.5536 32 1 3.6752 4.3193 -0.9566 33 1 2.8899 2.7221 -0.9863 34 1 5.8336 4.5537 0.1519 35 1 6.7975 3.0877 0.4523 36 1 6.8389 2.6162 -1.9818 37 1 5.8751 4.0821 -2.2822 38 1 7.6693 5.4672 -1.2760 39 1 8.6328 4.0010 -0.9758 40 1 7.7368 4.8973 -3.6373 41 1 9.4459 6.3454 -2.6955 42 1 10.4099 4.8794 -2.3957 43 1 11.7803 6.5272 -4.0295 44 1 14.3931 7.9332 -5.5585 45 1 4.4103 -1.4476 0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754366984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:38 Heat of formation + Delta-G solvation = -70.212326 kcal Electronic energy + Delta-G solvation = -25801.144338 eV Core-core repulsion = 21819.872109 eV Total energy + Delta-G solvation = -3981.272229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59994 -40.77254 -40.16689 -37.67106 -36.60892 -35.88395 -34.41903 -33.32729 -33.06700 -32.33004 -28.96104 -28.14138 -27.25346 -26.74965 -25.25032 -23.48747 -22.60117 -21.95079 -21.06246 -19.92109 -19.78397 -18.40898 -17.91670 -17.64512 -17.34544 -17.18986 -16.91355 -16.53995 -16.32836 -15.90868 -15.67835 -15.16663 -15.07461 -14.94435 -14.43725 -14.23230 -14.17364 -14.05951 -13.89845 -13.72161 -13.55563 -13.31228 -13.02635 -12.96665 -12.79718 -12.75255 -12.45391 -12.41940 -12.24747 -12.12664 -11.69562 -11.51976 -11.13875 -10.78310 -10.38130 -10.03128 -9.83102 -9.45560 -9.32998 -8.47778 -5.96947 0.32449 1.03944 1.37467 1.41216 1.54363 1.81282 2.01459 2.03218 2.26362 2.28890 2.93193 3.19206 3.46050 3.52298 3.70021 3.95900 3.98805 4.10275 4.23728 4.28590 4.33970 4.37128 4.44007 4.47011 4.52712 4.57255 4.61347 4.65585 4.76817 4.78096 4.79710 4.88787 4.91412 5.11222 5.14781 5.19407 5.39691 5.43439 5.53576 5.88193 6.02417 6.10049 6.31525 6.40498 6.58808 7.07527 7.11028 7.54265 8.09804 8.69568 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.001630 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.545372 B =17172.236242 C =17384.359768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.016 4.016 3 C -0.207 4.207 4 C -0.262 4.262 5 C 0.578 3.422 6 O -0.588 6.588 7 N -0.605 5.605 8 C 0.054 3.946 9 C 0.121 3.879 10 C -0.120 4.120 11 C 0.067 3.933 12 N -0.691 5.691 13 C 0.066 3.934 14 C 0.436 3.564 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.337 4.337 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.995 3.005 22 H -0.269 1.269 23 H -0.270 1.270 24 H -0.275 1.275 25 C 0.042 3.958 26 O -0.183 6.183 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.199 0.801 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.345 0.655 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.182 -7.609 17.069 33.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C -0.225 4.225 4 C -0.267 4.267 5 C 0.369 3.631 6 O -0.471 6.471 7 N -0.336 5.336 8 C -0.087 4.087 9 C -0.002 4.002 10 C -0.159 4.159 11 C -0.062 4.062 12 N -0.323 5.323 13 C -0.066 4.066 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.467 4.467 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.818 3.182 22 H -0.194 1.194 23 H -0.194 1.194 24 H -0.200 1.200 25 C -0.029 4.029 26 O -0.079 6.079 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.216 0.784 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.163 0.837 41 H 0.090 0.910 42 H 0.119 0.881 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -27.657 -8.982 16.635 33.501 hybrid contribution 0.971 1.118 -0.520 1.570 sum -26.686 -7.864 16.115 32.151 Atomic orbital electron populations 1.20562 0.81926 1.05663 1.04967 1.23219 0.95755 0.83271 1.04195 1.23599 0.89090 1.01587 1.08220 1.21461 0.94369 0.94530 1.16290 1.17717 0.87355 0.82382 0.75673 1.90781 1.31276 1.72509 1.52497 1.47708 1.09342 1.06263 1.70277 1.22751 0.83445 0.99567 1.02970 1.21473 0.86090 0.96432 0.96206 1.21763 0.96622 0.99889 0.97618 1.21902 0.96139 0.99248 0.88926 1.60016 1.06906 1.56698 1.08728 1.21527 0.94293 0.97865 0.92963 1.20912 0.82639 0.82386 0.91741 1.90487 1.60534 1.49994 1.50197 1.41925 1.22938 1.46282 1.09757 1.19685 1.08397 1.32024 0.86571 0.90397 1.26056 0.95927 0.95478 1.03734 1.69676 1.18782 1.33431 1.34107 0.84907 0.77601 0.78686 0.76994 1.19408 1.19446 1.19968 1.24634 0.84238 0.95713 0.98284 1.83783 1.16487 1.36579 1.71010 0.88668 0.89832 0.86928 0.78401 0.90139 0.89135 0.88879 0.86944 0.91266 0.94093 0.90967 0.92648 0.91023 0.83671 0.91002 0.88107 0.76897 0.91236 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.40 71.23 0.74 0.47 16 2 C -0.02 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.21 -2.63 8.76 23.65 0.21 -2.42 16 4 C -0.26 -5.25 6.08 -18.99 -0.12 -5.36 16 5 C 0.58 14.48 7.67 86.65 0.66 15.15 16 6 O -0.59 -19.70 16.51 -4.07 -0.07 -19.76 16 7 N -0.61 -11.35 2.87 -850.71 -2.44 -13.79 16 8 C 0.05 0.51 8.74 127.77 1.12 1.63 16 9 C 0.12 2.26 5.38 86.38 0.46 2.72 16 10 C -0.12 -2.75 5.80 30.59 0.18 -2.57 16 11 C 0.07 1.63 5.69 86.30 0.49 2.12 16 12 N -0.69 -23.27 6.13 -517.93 -3.17 -26.44 16 13 C 0.07 2.36 6.17 85.55 0.53 2.88 16 14 C 0.44 21.55 7.82 87.66 0.69 22.23 16 15 O -0.63 -36.10 15.78 -3.08 -0.05 -36.15 16 16 N -0.57 -30.17 5.29 -306.99 -1.62 -31.79 16 17 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 18 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 19 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 20 N -0.92 -50.18 13.05 21.66 0.28 -49.89 16 21 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.04 0.77 11.92 67.39 0.80 1.58 16 26 O -0.18 -3.03 10.52 4.50 0.05 -2.98 16 27 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 29 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.20 1.23 4.89 -2.91 -0.01 1.22 16 31 H 0.08 0.45 7.69 -2.39 -0.02 0.43 16 32 H 0.09 0.60 8.03 -2.39 -0.02 0.58 16 33 H 0.09 0.81 4.78 -2.39 -0.01 0.80 16 34 H 0.11 1.33 8.07 -2.39 -0.02 1.31 16 35 H 0.07 1.57 7.42 -2.38 -0.02 1.55 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.34 11.87 8.43 -89.69 -0.76 11.11 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.40 19.77 7.90 -92.71 -0.73 19.03 16 44 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 45 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -81.16 381.92 1.77 -79.39 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.46 Total: 36.41 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 7.22 Total: 19.41 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.96 Total: -121.92 kcal Atomic # 8 Polarization: -58.83 SS G_CDS: -0.07 Total: -58.89 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -81.16 1.77 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754366984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.179 kcal (2) G-P(sol) polarization free energy of solvation -81.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds