Wall clock time and date at job start Tue Mar 31 2020 13:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99635 * 2 1 4 4 C 1.53000 * 109.46651 * 269.99898 * 3 2 1 5 5 C 1.53002 * 109.46950 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47265 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00264 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99641 * 0.02562 * 7 6 5 9 9 C 1.38802 * 120.00095 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00485 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00095 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47099 * 90.00006 * 11 9 7 13 13 H 1.48501 * 109.47693 * 210.00200 * 11 9 7 14 14 H 1.48500 * 109.47110 * 330.00148 * 11 9 7 15 15 C 1.34776 * 120.00122 * 179.97438 * 2 1 3 16 16 O 1.21685 * 119.99715 * 182.40236 * 15 2 1 17 17 C 1.46682 * 120.00293 * 2.39856 * 15 2 1 18 18 C 1.35657 * 126.13012 * 174.03891 * 17 15 2 19 19 N 1.30941 * 114.19166 * 179.73179 * 18 17 15 20 20 C 1.29429 * 117.36174 * 0.52520 * 19 18 17 21 21 C 1.50706 * 124.80545 * 179.76647 * 20 19 18 22 22 C 1.52996 * 109.47117 * 89.69691 * 21 20 19 23 23 C 1.53005 * 117.49577 * 243.62060 * 22 21 20 24 24 C 1.52998 * 60.00200 * 252.51069 * 23 22 21 25 25 S 1.70955 * 110.39151 * 359.49679 * 20 19 18 26 26 H 1.09002 * 109.46805 * 235.35540 * 1 2 3 27 27 H 1.08990 * 109.47554 * 355.35803 * 1 2 3 28 28 H 1.08999 * 109.47016 * 115.36686 * 1 2 3 29 29 H 1.08998 * 109.46912 * 29.99468 * 3 2 1 30 30 H 1.08989 * 109.47055 * 150.00070 * 3 2 1 31 31 H 1.09003 * 109.47495 * 299.99713 * 4 3 2 32 32 H 1.09002 * 109.47516 * 60.00417 * 4 3 2 33 33 H 1.09003 * 109.47357 * 300.00126 * 5 4 3 34 34 H 1.09006 * 109.47088 * 60.00084 * 5 4 3 35 35 H 0.96999 * 119.99371 * 0.02562 * 6 5 4 36 36 H 0.96999 * 120.00388 * 179.97438 * 10 9 7 37 37 H 1.08002 * 122.90500 * 0.02562 * 18 17 15 38 38 H 1.09006 * 109.46978 * 209.69663 * 21 20 19 39 39 H 1.08998 * 109.46849 * 329.69539 * 21 20 19 40 40 H 1.08998 * 115.55280 * 29.33081 * 22 21 20 41 41 H 1.08996 * 117.49913 * 0.02562 * 23 22 21 42 42 H 1.09005 * 117.49382 * 145.02025 * 23 22 21 43 43 H 1.09000 * 117.49950 * 252.51687 * 24 23 22 44 44 H 1.09003 * 117.51741 * 107.47936 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2168 3.0358 -1.4426 6 7 3.4615 3.4584 -2.8239 7 6 4.1337 4.6248 -3.0742 8 1 4.4839 5.2330 -2.2533 9 6 4.3650 5.0254 -4.3829 10 7 3.9379 4.2845 -5.3833 11 14 5.2827 6.6162 -4.7243 12 1 6.7387 6.3382 -4.8146 13 1 4.8090 7.1956 -6.0070 14 1 5.0301 7.5796 -3.6229 15 6 2.1389 -1.1672 0.0005 16 8 3.3550 -1.1675 0.0447 17 6 1.4066 -2.4370 -0.0521 18 6 1.9547 -3.6721 -0.1714 19 7 1.0812 -4.6474 -0.1894 20 6 -0.1699 -4.3270 -0.1042 21 6 -1.3122 -5.3101 -0.1139 22 6 -1.6212 -5.7469 1.3194 23 6 -1.4152 -7.2224 1.6681 24 6 -2.8312 -6.6584 1.5348 25 16 -0.3429 -2.6314 0.0282 26 1 -0.3633 -0.5842 0.8455 27 1 -0.3634 1.0242 0.0832 28 1 -0.3633 -0.4403 -0.9286 29 1 1.6083 2.0284 0.5137 30 1 3.1498 1.1385 0.5138 31 1 3.0416 0.9508 -1.9564 32 1 1.5000 1.8407 -1.9564 33 1 2.6273 3.7952 -0.9289 34 1 4.1692 2.9059 -0.9286 35 1 3.1466 2.9122 -3.5611 36 1 4.0992 4.5646 -6.2978 37 1 3.0198 -3.8372 -0.2406 38 1 -2.1938 -4.8384 -0.5481 39 1 -1.0366 -6.1814 -0.7080 40 1 -1.4014 -5.0111 2.0929 41 1 -1.0591 -7.8817 0.8766 42 1 -1.0595 -7.4574 2.6713 43 1 -3.4070 -6.5223 2.4503 44 1 -3.4073 -6.9463 0.6554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754386384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:39 Heat of formation + Delta-G solvation = 44.948396 kcal Electronic energy + Delta-G solvation = -23719.677975 eV Core-core repulsion = 20186.152361 eV Total energy + Delta-G solvation = -3533.525614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43656 -39.55545 -37.89085 -36.24331 -34.89520 -32.65206 -31.94347 -30.08000 -28.86509 -27.25167 -25.69491 -24.49225 -23.04313 -22.83062 -21.43912 -21.23189 -20.76250 -19.08074 -18.62140 -17.04648 -16.90351 -16.56107 -15.96478 -15.77798 -15.23237 -15.09664 -14.55851 -14.47080 -14.06246 -13.90630 -13.74760 -13.37414 -13.30118 -13.22051 -13.06142 -12.74817 -12.10118 -11.99888 -11.97924 -11.95200 -11.74255 -10.93962 -10.91024 -10.84012 -10.75824 -10.49474 -10.42675 -10.19140 -10.03292 -9.79649 -9.74208 -9.68867 -9.26380 -8.84628 -8.73321 -6.89438 -5.73551 -3.02424 -0.01219 0.89900 1.31981 2.23166 2.74899 3.03584 3.28131 3.45934 3.50554 3.52391 3.66085 4.24107 4.30958 4.40464 4.47303 4.61638 4.65513 4.72161 4.94005 4.95352 5.06525 5.14786 5.15983 5.19958 5.21572 5.29845 5.37484 5.44773 5.58604 5.65040 5.65994 5.70785 5.82218 5.86662 6.04970 6.28148 6.38376 6.42425 6.85899 6.87519 7.10419 7.38882 7.72400 7.93585 8.45258 9.56107 10.14538 10.49088 11.49500 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.001945 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.746028 B =14390.883691 C =14400.453857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.608 5.608 3 C 0.121 3.879 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.592 3.408 16 O -0.518 6.518 17 C -0.292 4.292 18 C 0.121 3.879 19 N -0.477 5.477 20 C 0.036 3.964 21 C -0.016 4.016 22 C -0.151 4.151 23 C -0.173 4.173 24 C -0.176 4.176 25 S 0.189 5.811 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.021 0.979 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.187 0.813 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.765 -21.497 16.089 32.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.341 5.341 3 C -0.001 4.001 4 C -0.179 4.179 5 C 0.028 3.972 6 N -0.377 5.377 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.379 3.621 16 O -0.396 6.396 17 C -0.416 4.416 18 C -0.037 4.037 19 N -0.191 5.191 20 C -0.238 4.238 21 C -0.057 4.057 22 C -0.171 4.171 23 C -0.210 4.210 24 C -0.213 4.213 25 S 0.447 5.553 26 H 0.085 0.915 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.204 0.796 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.799 -21.223 16.189 32.082 hybrid contribution 1.289 0.519 -0.639 1.530 sum -16.510 -20.704 15.550 30.709 Atomic orbital electron populations 1.21948 0.80044 1.04277 1.01909 1.47708 1.06717 1.06379 1.73252 1.21612 0.97672 0.82526 0.98338 1.22086 1.01256 0.99135 0.95446 1.20539 0.96069 0.91750 0.88801 1.42347 1.68379 1.25951 1.01065 1.19249 1.27858 0.98108 0.91824 0.91117 1.24757 1.01734 0.99097 0.95567 1.69665 1.51528 1.38955 0.98153 0.86165 0.79541 0.83075 0.77266 1.21697 1.21781 1.20755 1.16765 0.86605 0.81848 0.76927 1.90873 1.12415 1.86537 1.49737 1.25789 0.96315 0.99611 1.19879 1.22181 1.01217 0.85185 0.95111 1.66274 1.00355 1.35837 1.16603 1.27756 0.96038 0.99395 1.00599 1.19887 0.92588 0.96885 0.96300 1.22173 1.03850 0.94449 0.96650 1.23055 0.99168 0.95537 1.03206 1.23019 0.91027 1.03654 1.03565 1.84321 1.03459 1.01965 1.65543 0.91535 0.88234 0.91189 0.90022 0.89311 0.91491 0.91863 0.96339 0.96129 0.78320 0.93534 0.79597 0.88951 0.88536 0.87640 0.88380 0.88729 0.88513 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 8.78 59.85 0.53 1.05 16 2 N -0.61 -7.47 2.87 -183.13 -0.53 -8.00 16 3 C 0.12 1.62 5.41 -4.04 -0.02 1.59 16 4 C -0.14 -2.37 5.65 -26.73 -0.15 -2.52 16 5 C 0.16 3.24 6.26 -4.04 -0.03 3.21 16 6 N -0.73 -19.39 5.60 -59.90 -0.34 -19.73 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.02 -0.47 5.50 -17.44 -0.10 -0.56 16 10 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 11 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.59 8.50 7.64 -12.85 -0.10 8.40 16 16 O -0.52 -9.33 16.43 5.20 0.09 -9.24 16 17 C -0.29 -3.48 6.33 -37.10 -0.23 -3.72 16 18 C 0.12 1.46 11.10 -18.85 -0.21 1.25 16 19 N -0.48 -5.46 10.51 -11.50 -0.12 -5.58 16 20 C 0.04 0.32 6.59 -13.29 -0.09 0.24 16 21 C -0.02 -0.10 6.07 -27.88 -0.17 -0.27 16 22 C -0.15 -0.88 5.72 -90.62 -0.52 -1.40 16 23 C -0.17 -0.96 10.18 -26.73 -0.27 -1.23 16 24 C -0.18 -0.78 10.25 -26.73 -0.27 -1.06 16 25 S 0.19 1.53 17.81 -107.50 -1.91 -0.38 16 26 H 0.07 0.45 6.02 -36.80 -0.22 0.23 16 27 H 0.10 0.66 7.77 -51.93 -0.40 0.26 16 28 H 0.07 0.55 6.89 -51.81 -0.36 0.20 16 29 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 30 H 0.09 1.30 7.39 -51.94 -0.38 0.92 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 36 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.60 7.87 -51.93 -0.41 0.19 16 40 H 0.11 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.10 0.53 8.03 -51.93 -0.42 0.12 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -35.23 379.56 -9.86 -45.09 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.68 Total: 4.65 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -1.78 Total: -2.08 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.26 Total: -61.59 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -1.91 Total: -0.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.23 -9.86 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754386384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.035 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds