Wall clock time and date at job start Tue Mar 31 2020 13:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99635 * 2 1 4 4 C 1.53000 * 109.46651 * 269.99898 * 3 2 1 5 5 C 1.53002 * 109.46950 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47265 * 179.97438 * 5 4 3 7 7 C 1.36936 * 120.00264 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99641 * 0.02562 * 7 6 5 9 9 C 1.38802 * 120.00095 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00485 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00095 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47099 * 90.00006 * 11 9 7 13 13 H 1.48501 * 109.47693 * 210.00200 * 11 9 7 14 14 H 1.48500 * 109.47110 * 330.00148 * 11 9 7 15 15 C 1.34776 * 120.00122 * 179.97438 * 2 1 3 16 16 O 1.21685 * 119.99715 * 182.40236 * 15 2 1 17 17 C 1.46682 * 120.00293 * 2.39856 * 15 2 1 18 18 C 1.35657 * 126.13012 * 174.03891 * 17 15 2 19 19 N 1.30941 * 114.19166 * 179.73179 * 18 17 15 20 20 C 1.29429 * 117.36174 * 0.52520 * 19 18 17 21 21 C 1.50706 * 124.80545 * 179.76647 * 20 19 18 22 22 C 1.52996 * 109.47117 * 89.69691 * 21 20 19 23 23 C 1.53005 * 117.49577 * 243.62060 * 22 21 20 24 24 C 1.52998 * 60.00200 * 252.51069 * 23 22 21 25 25 S 1.70955 * 110.39151 * 359.49679 * 20 19 18 26 26 H 1.09002 * 109.46805 * 235.35540 * 1 2 3 27 27 H 1.08990 * 109.47554 * 355.35803 * 1 2 3 28 28 H 1.08999 * 109.47016 * 115.36686 * 1 2 3 29 29 H 1.08998 * 109.46912 * 29.99468 * 3 2 1 30 30 H 1.08989 * 109.47055 * 150.00070 * 3 2 1 31 31 H 1.09003 * 109.47495 * 299.99713 * 4 3 2 32 32 H 1.09002 * 109.47516 * 60.00417 * 4 3 2 33 33 H 1.09003 * 109.47357 * 300.00126 * 5 4 3 34 34 H 1.09006 * 109.47088 * 60.00084 * 5 4 3 35 35 H 0.96999 * 119.99371 * 0.02562 * 6 5 4 36 36 H 0.96999 * 120.00388 * 179.97438 * 10 9 7 37 37 H 1.08002 * 122.90500 * 0.02562 * 18 17 15 38 38 H 1.09006 * 109.46978 * 209.69663 * 21 20 19 39 39 H 1.08998 * 109.46849 * 329.69539 * 21 20 19 40 40 H 1.08998 * 115.55280 * 29.33081 * 22 21 20 41 41 H 1.08996 * 117.49913 * 0.02562 * 23 22 21 42 42 H 1.09005 * 117.49382 * 145.02025 * 23 22 21 43 43 H 1.09000 * 117.49950 * 252.51687 * 24 23 22 44 44 H 1.09003 * 117.51741 * 107.47936 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2168 3.0358 -1.4426 6 7 3.4615 3.4584 -2.8239 7 6 4.1337 4.6248 -3.0742 8 1 4.4839 5.2330 -2.2533 9 6 4.3650 5.0254 -4.3829 10 7 3.9379 4.2845 -5.3833 11 14 5.2827 6.6162 -4.7243 12 1 6.7387 6.3382 -4.8146 13 1 4.8090 7.1956 -6.0070 14 1 5.0301 7.5796 -3.6229 15 6 2.1389 -1.1672 0.0005 16 8 3.3550 -1.1675 0.0447 17 6 1.4066 -2.4370 -0.0521 18 6 1.9547 -3.6721 -0.1714 19 7 1.0812 -4.6474 -0.1894 20 6 -0.1699 -4.3270 -0.1042 21 6 -1.3122 -5.3101 -0.1139 22 6 -1.6212 -5.7469 1.3194 23 6 -1.4152 -7.2224 1.6681 24 6 -2.8312 -6.6584 1.5348 25 16 -0.3429 -2.6314 0.0282 26 1 -0.3633 -0.5842 0.8455 27 1 -0.3634 1.0242 0.0832 28 1 -0.3633 -0.4403 -0.9286 29 1 1.6083 2.0284 0.5137 30 1 3.1498 1.1385 0.5138 31 1 3.0416 0.9508 -1.9564 32 1 1.5000 1.8407 -1.9564 33 1 2.6273 3.7952 -0.9289 34 1 4.1692 2.9059 -0.9286 35 1 3.1466 2.9122 -3.5611 36 1 4.0992 4.5646 -6.2978 37 1 3.0198 -3.8372 -0.2406 38 1 -2.1938 -4.8384 -0.5481 39 1 -1.0366 -6.1814 -0.7080 40 1 -1.4014 -5.0111 2.0929 41 1 -1.0591 -7.8817 0.8766 42 1 -1.0595 -7.4574 2.6713 43 1 -3.4070 -6.5223 2.4503 44 1 -3.4073 -6.9463 0.6554 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754386384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:38 Heat of formation + Delta-G solvation = 21.939954 kcal Electronic energy + Delta-G solvation = -23720.675696 eV Core-core repulsion = 20186.152361 eV Total energy + Delta-G solvation = -3534.523335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.38184 -40.45915 -38.34442 -37.57628 -36.51751 -34.22538 -32.95410 -31.66823 -29.78117 -28.23809 -27.02245 -25.57835 -24.60706 -23.19535 -22.81793 -22.00941 -21.70397 -19.90471 -19.50659 -19.16468 -17.81160 -17.50083 -16.86189 -16.73632 -16.35637 -16.03070 -15.86106 -15.75905 -15.29739 -15.12158 -14.67768 -14.62158 -14.38093 -14.26705 -13.87040 -13.56879 -13.48400 -13.31565 -12.79881 -12.77782 -12.58665 -12.52713 -12.39947 -12.31855 -12.06842 -11.84932 -11.82487 -11.36688 -11.23996 -10.95808 -10.88621 -10.56321 -10.50716 -10.16262 -9.65034 -9.03642 -7.97235 -5.27300 -0.83490 0.13673 0.55018 1.32485 1.46219 1.49150 1.57451 1.78281 2.05473 2.55131 2.86933 3.01550 3.36316 3.42408 3.80756 3.82322 3.88446 4.00251 4.02709 4.06735 4.16250 4.20046 4.29737 4.34067 4.51523 4.54406 4.57838 4.65956 4.69093 4.73161 4.75372 4.85339 4.85447 5.01152 5.08585 5.24202 5.27710 5.28435 5.31097 5.40432 5.47305 6.11283 6.24787 6.60097 6.88700 7.30338 8.05753 8.28805 9.26619 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.033455 B = 0.001945 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.746028 B =14390.883691 C =14400.453857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.605 5.605 3 C 0.128 3.872 4 C -0.123 4.123 5 C 0.154 3.846 6 N -0.750 5.750 7 C -0.249 4.249 8 H 0.079 0.921 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.979 3.021 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.265 1.265 15 C 0.585 3.415 16 O -0.570 6.570 17 C -0.325 4.325 18 C 0.113 3.887 19 N -0.504 5.504 20 C 0.033 3.967 21 C -0.017 4.017 22 C -0.160 4.160 23 C -0.187 4.187 24 C -0.159 4.159 25 S 0.271 5.729 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.014 0.986 35 H 0.372 0.628 36 H 0.252 0.748 37 H 0.176 0.824 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.512 -20.929 17.281 34.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.336 5.336 3 C 0.006 3.994 4 C -0.162 4.162 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.381 4.381 8 H 0.097 0.903 9 C -0.271 4.271 10 N -0.622 5.622 11 Si 0.807 3.193 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.190 1.190 15 C 0.373 3.627 16 O -0.452 6.452 17 C -0.449 4.449 18 C -0.046 4.046 19 N -0.219 5.219 20 C -0.240 4.240 21 C -0.057 4.057 22 C -0.180 4.180 23 C -0.224 4.224 24 C -0.196 4.196 25 S 0.531 5.469 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.032 0.968 35 H 0.203 0.797 36 H 0.060 0.940 37 H 0.193 0.807 38 H 0.136 0.864 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.123 0.877 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.608 -20.650 17.434 33.986 hybrid contribution 2.049 0.271 -0.950 2.275 sum -18.559 -20.379 16.484 32.116 Atomic orbital electron populations 1.22296 0.77287 1.06537 1.02998 1.47767 1.08426 1.05268 1.72135 1.21479 0.98191 0.83972 0.95799 1.21891 1.00361 0.96222 0.97773 1.20713 0.96527 0.93983 0.86019 1.42608 1.68257 1.25364 1.02988 1.19696 1.27345 0.98800 0.92224 0.90332 1.25658 1.03232 1.02762 0.95465 1.69830 1.53233 1.40888 0.98295 0.85066 0.77831 0.79183 0.77223 1.21586 1.21944 1.19011 1.17164 0.86263 0.83085 0.76159 1.90832 1.14705 1.87416 1.52210 1.25664 0.99303 0.98347 1.21600 1.22157 1.01303 0.85811 0.95374 1.66323 1.01327 1.35954 1.18248 1.28376 0.96002 1.01046 0.98613 1.20072 0.92305 0.96516 0.96799 1.22155 1.05219 0.94407 0.96179 1.23116 1.00618 0.95557 1.03105 1.23100 0.90381 1.01696 1.04402 1.83846 0.99136 1.00204 1.63740 0.89697 0.85650 0.90525 0.86251 0.90992 0.94634 0.91012 0.94365 0.96777 0.79690 0.93953 0.80721 0.86351 0.88564 0.88064 0.88584 0.88963 0.87657 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 8.78 127.77 1.12 1.81 16 2 N -0.61 -14.12 2.87 -851.52 -2.45 -16.57 16 3 C 0.13 3.28 5.41 86.38 0.47 3.75 16 4 C -0.12 -4.14 5.65 30.59 0.17 -3.96 16 5 C 0.15 6.32 6.26 86.38 0.54 6.86 16 6 N -0.75 -39.97 5.60 -343.44 -1.92 -41.89 16 7 C -0.25 -14.39 9.99 84.03 0.84 -13.55 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 10 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 11 Si 0.98 47.04 29.55 68.60 2.03 49.06 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 13 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.59 17.11 7.64 86.45 0.66 17.77 16 16 O -0.57 -21.77 16.43 -4.30 -0.07 -21.84 16 17 C -0.33 -7.75 6.33 23.88 0.15 -7.59 16 18 C 0.11 2.84 11.10 84.23 0.93 3.78 16 19 N -0.50 -11.54 10.51 -190.30 -2.00 -13.54 16 20 C 0.03 0.53 6.59 88.46 0.58 1.12 16 21 C -0.02 -0.17 6.07 29.85 0.18 0.01 16 22 C -0.16 -1.54 5.72 -10.79 -0.06 -1.60 16 23 C -0.19 -1.85 10.18 30.60 0.31 -1.54 16 24 C -0.16 -1.02 10.25 30.60 0.31 -0.71 16 25 S 0.27 3.76 17.81 -56.49 -1.01 2.75 16 26 H 0.09 0.83 6.02 -12.00 -0.07 0.76 16 27 H 0.13 1.09 7.77 -2.39 -0.02 1.08 16 28 H 0.08 0.96 6.89 -2.46 -0.02 0.94 16 29 H 0.12 2.18 7.88 -2.39 -0.02 2.16 16 30 H 0.07 2.12 7.39 -2.39 -0.02 2.10 16 31 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.37 21.16 7.67 -92.71 -0.71 20.45 16 36 H 0.25 15.29 8.31 -92.71 -0.77 14.51 16 37 H 0.18 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.12 0.57 8.14 -2.38 -0.02 0.56 16 39 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 40 H 0.10 1.07 8.07 -2.39 -0.02 1.05 16 41 H 0.10 0.97 8.03 -2.39 -0.02 0.95 16 42 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -78.52 379.56 1.78 -76.74 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.24 Total: 24.30 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 6.68 Total: 1.92 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -6.09 Total: -132.94 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.07 Total: -21.84 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.01 Total: 2.75 kcal Total: -78.52 1.78 -76.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754386384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.681 kcal (2) G-P(sol) polarization free energy of solvation -78.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds