Wall clock time and date at job start Tue Mar 31 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35268 * 126.70834 * 2 1 4 4 C 1.41934 * 103.95579 * 179.97438 * 3 2 1 5 5 O 1.35709 * 126.87685 * 179.97438 * 4 3 2 6 6 C 1.42902 * 117.00292 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47420 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99663 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00007 * 179.97438 * 7 6 5 10 10 C 1.47029 * 125.64740 * 359.97438 * 9 7 6 11 11 C 1.54323 * 107.26519 * 181.09983 * 10 9 7 12 12 C 1.55150 * 102.94848 * 22.19290 * 11 10 9 13 13 H 1.09005 * 111.00543 * 82.60395 * 12 11 10 14 14 C 1.52997 * 111.00745 * 206.42145 * 12 11 10 15 15 C 1.53000 * 109.47060 * 185.00071 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.36936 * 120.00002 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47195 * 59.99322 * 21 19 17 23 23 H 1.48506 * 109.47064 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46974 * 299.99436 * 21 19 17 25 25 C 1.47421 * 125.64944 * 180.02562 * 9 7 6 26 26 N 1.30614 * 106.24442 * 0.24036 * 4 3 2 27 27 O 1.20918 * 111.49673 * 359.57160 * 26 4 3 28 28 H 1.09003 * 109.47529 * 89.99771 * 1 2 3 29 29 H 1.09000 * 109.47282 * 209.99978 * 1 2 3 30 30 H 1.09003 * 109.47289 * 330.00052 * 1 2 3 31 31 H 1.07998 * 128.02322 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.46582 * 60.00113 * 6 5 4 33 33 H 1.08996 * 109.47337 * 300.00702 * 6 5 4 34 34 H 1.09004 * 109.88152 * 61.68409 * 10 9 7 35 35 H 1.08992 * 109.87956 * 300.51681 * 10 9 7 36 36 H 1.08995 * 110.71952 * 263.82225 * 11 10 9 37 37 H 1.09005 * 110.86523 * 140.63116 * 11 10 9 38 38 H 1.09002 * 109.47153 * 64.99752 * 14 12 11 39 39 H 1.09001 * 109.46832 * 304.99943 * 14 12 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 41 41 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 42 42 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 43 43 H 0.96993 * 120.00311 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.36529 * 36.99575 * 25 9 7 45 45 H 1.09003 * 110.37349 * 274.67175 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6244 0.5355 0.0006 5 8 4.7953 1.2216 0.0004 6 6 5.9988 0.4512 0.0017 7 6 7.1880 1.3769 0.0006 8 8 7.0212 2.5781 -0.0007 9 7 8.4367 0.8698 0.0020 10 6 8.7811 -0.5596 0.0053 11 6 10.3208 -0.6597 0.0342 12 6 10.7475 0.7136 0.6167 13 1 10.6868 0.7123 1.7050 14 6 12.1537 1.0945 0.1493 15 6 12.5877 2.3888 0.8403 16 7 13.9338 2.7538 0.3923 17 6 14.5343 3.8842 0.8788 18 1 14.0153 4.5069 1.5925 19 6 15.8097 4.2304 0.4538 20 7 16.4420 3.4719 -0.4163 21 14 16.6291 5.7721 1.1181 22 1 16.7586 5.6673 2.5937 23 1 17.9773 5.9164 0.5122 24 1 15.8030 6.9581 0.7766 25 6 9.6835 1.6565 0.0017 26 7 3.4764 -0.7622 -0.0044 27 8 2.3084 -1.0750 0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0311 2.1263 0.0004 32 1 6.0281 -0.1784 -0.8877 33 1 6.0274 -0.1766 0.8922 34 1 8.3955 -1.0358 -0.8962 35 1 8.3617 -1.0398 0.8892 36 1 10.7176 -0.7918 -0.9723 37 1 10.6449 -1.4721 0.6847 38 1 12.1499 1.2428 -0.9306 39 1 12.8501 0.2955 0.4039 40 1 11.8913 3.1877 0.5857 41 1 12.5914 2.2405 1.9201 42 1 14.3999 2.1948 -0.2491 43 1 17.3333 3.7136 -0.7129 44 1 9.5684 2.5500 0.6153 45 1 9.9606 1.9280 -1.0170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754918926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:58 Heat of formation + Delta-G solvation = 5.489216 kcal Electronic energy + Delta-G solvation = -26057.675323 eV Core-core repulsion = 22079.685760 eV Total energy + Delta-G solvation = -3977.989563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.30300 -40.51418 -39.14640 -37.68540 -35.17972 -34.29009 -33.14494 -32.90557 -31.16907 -29.70410 -29.27918 -28.27353 -26.76708 -24.28436 -23.82907 -23.11714 -21.77862 -21.30085 -20.24251 -19.61741 -18.39259 -18.27168 -17.27939 -17.18332 -17.08871 -16.65216 -16.05250 -15.53610 -14.86408 -14.62891 -14.37066 -14.24211 -14.01304 -13.77939 -13.73679 -13.60589 -13.32203 -13.08424 -12.97660 -12.86116 -12.77489 -12.32338 -12.08430 -11.72010 -11.54230 -11.39551 -11.08942 -10.81807 -10.69118 -10.51204 -10.37550 -10.10385 -10.00596 -9.95895 -9.65964 -9.61777 -8.89394 -8.84424 -6.90247 -5.74545 -3.03138 0.97804 1.85602 1.89299 2.28331 2.64321 3.01075 3.46426 3.50362 3.51702 3.75468 4.01676 4.32410 4.37449 4.48737 4.51592 4.56876 4.63455 4.63992 4.75435 4.75992 4.84165 5.00606 5.09219 5.18349 5.21494 5.32851 5.46004 5.50349 5.57327 5.63067 5.73660 5.77178 5.85944 5.98308 6.05448 6.22594 6.35397 6.36290 6.54960 6.84175 6.87947 7.19106 7.72082 7.79769 7.85673 8.44664 9.55605 10.13648 10.48140 11.48386 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.001726 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.105071 B =16219.263503 C =16911.111344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.008 4.008 3 C -0.232 4.232 4 C 0.214 3.786 5 O -0.256 6.256 6 C 0.052 3.948 7 C 0.530 3.470 8 O -0.516 6.516 9 N -0.615 5.615 10 C 0.095 3.905 11 C -0.128 4.128 12 C -0.094 4.094 13 H 0.087 0.913 14 C -0.114 4.114 15 C 0.151 3.849 16 N -0.734 5.734 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.112 3.888 26 N -0.412 5.412 27 O 0.098 5.902 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.180 0.820 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.383 0.617 43 H 0.255 0.745 44 H 0.084 0.916 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.046 -14.119 0.055 35.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.254 4.254 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.027 4.027 7 C 0.317 3.683 8 O -0.390 6.390 9 N -0.351 5.351 10 C -0.028 4.028 11 C -0.165 4.165 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.153 4.153 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.009 4.009 26 N -0.140 5.140 27 O 0.038 5.962 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.197 0.803 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.102 0.898 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -31.276 -13.984 0.133 34.260 hybrid contribution 0.563 1.212 0.118 1.342 sum -30.713 -12.772 0.250 33.264 Atomic orbital electron populations 1.20397 0.83396 1.05015 1.04479 1.24363 0.96520 0.85517 1.00742 1.21827 0.88230 1.01815 1.13539 1.22054 0.88392 0.88064 0.99891 1.86285 1.09996 1.30776 1.89056 1.22441 0.82162 0.93426 1.04664 1.19474 0.82582 0.88632 0.77645 1.90787 1.84789 1.15023 1.48442 1.48400 1.05062 1.08398 1.73241 1.22180 0.97452 0.81475 1.01721 1.22720 0.92629 0.98374 1.02816 1.22363 0.94851 0.93468 1.00710 0.89498 1.21686 0.93410 0.99250 1.00919 1.20685 0.88131 0.92914 0.95957 1.42349 1.13528 1.28942 1.52984 1.19209 0.97618 1.00399 1.19924 0.91238 1.24738 0.97359 0.99131 0.99776 1.69646 1.14027 1.39306 1.35373 0.86258 0.78593 0.83011 0.78281 1.21275 1.21664 1.21246 1.22481 0.81273 0.95210 1.01972 1.74159 0.98007 1.14163 1.27666 1.84789 1.10273 1.31999 1.69144 0.89005 0.89464 0.88691 0.80298 0.88625 0.88600 0.91167 0.91172 0.90011 0.89619 0.91506 0.91163 0.96303 0.96425 0.78324 0.93496 0.89766 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.45 36.00 0.38 0.24 16 2 C -0.01 -0.05 7.48 -35.37 -0.26 -0.31 16 3 C -0.23 -1.90 11.11 -39.23 -0.44 -2.34 16 4 C 0.21 2.38 8.01 -16.66 -0.13 2.25 16 5 O -0.26 -3.31 9.74 -38.74 -0.38 -3.68 16 6 C 0.05 0.56 5.33 36.01 0.19 0.75 16 7 C 0.53 7.20 7.93 -10.99 -0.09 7.12 16 8 O -0.52 -9.30 16.75 -14.35 -0.24 -9.54 16 9 N -0.61 -7.26 3.33 -170.52 -0.57 -7.82 16 10 C 0.09 0.78 6.49 -3.06 -0.02 0.76 16 11 C -0.13 -1.11 6.42 -24.90 -0.16 -1.27 16 12 C -0.09 -1.11 3.00 -88.48 -0.27 -1.37 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.11 -1.72 4.84 -26.73 -0.13 -1.84 16 15 C 0.15 3.02 6.16 -4.04 -0.02 2.99 16 16 N -0.73 -18.90 5.60 -59.91 -0.34 -19.23 16 17 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 21 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.11 1.47 5.86 -2.53 -0.01 1.46 16 26 N -0.41 -4.44 11.54 30.38 0.35 -4.09 16 27 O 0.10 0.87 11.19 17.07 0.19 1.06 16 28 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 29 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.38 10.26 7.67 -40.82 -0.31 9.95 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 1.25 8.04 -51.93 -0.42 0.84 16 45 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -36.36 381.76 -7.73 -44.09 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.99 Total: 2.70 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.21 Total: 0.86 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.17 Total: -59.02 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.43 Total: -12.17 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.36 -7.73 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754918926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds