Wall clock time and date at job start Tue Mar 31 2020 14:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35268 * 126.70834 * 2 1 4 4 C 1.41934 * 103.95579 * 179.97438 * 3 2 1 5 5 O 1.35709 * 126.87685 * 179.97438 * 4 3 2 6 6 C 1.42902 * 117.00292 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47420 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99663 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00007 * 179.97438 * 7 6 5 10 10 C 1.47029 * 125.64740 * 359.97438 * 9 7 6 11 11 C 1.54323 * 107.26519 * 181.09983 * 10 9 7 12 12 C 1.55150 * 102.94848 * 22.19290 * 11 10 9 13 13 H 1.09005 * 111.00543 * 82.60395 * 12 11 10 14 14 C 1.52997 * 111.00745 * 206.42145 * 12 11 10 15 15 C 1.53000 * 109.47060 * 185.00071 * 14 12 11 16 16 N 1.46499 * 109.46840 * 180.02562 * 15 14 12 17 17 C 1.36936 * 120.00002 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00175 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00164 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47195 * 59.99322 * 21 19 17 23 23 H 1.48506 * 109.47064 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46974 * 299.99436 * 21 19 17 25 25 C 1.47421 * 125.64944 * 180.02562 * 9 7 6 26 26 N 1.30614 * 106.24442 * 0.24036 * 4 3 2 27 27 O 1.20918 * 111.49673 * 359.57160 * 26 4 3 28 28 H 1.09003 * 109.47529 * 89.99771 * 1 2 3 29 29 H 1.09000 * 109.47282 * 209.99978 * 1 2 3 30 30 H 1.09003 * 109.47289 * 330.00052 * 1 2 3 31 31 H 1.07998 * 128.02322 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.46582 * 60.00113 * 6 5 4 33 33 H 1.08996 * 109.47337 * 300.00702 * 6 5 4 34 34 H 1.09004 * 109.88152 * 61.68409 * 10 9 7 35 35 H 1.08992 * 109.87956 * 300.51681 * 10 9 7 36 36 H 1.08995 * 110.71952 * 263.82225 * 11 10 9 37 37 H 1.09005 * 110.86523 * 140.63116 * 11 10 9 38 38 H 1.09002 * 109.47153 * 64.99752 * 14 12 11 39 39 H 1.09001 * 109.46832 * 304.99943 * 14 12 11 40 40 H 1.09001 * 109.47194 * 299.99650 * 15 14 12 41 41 H 1.08992 * 109.47399 * 59.99823 * 15 14 12 42 42 H 0.97005 * 120.00448 * 359.97438 * 16 15 14 43 43 H 0.96993 * 120.00311 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.36529 * 36.99575 * 25 9 7 45 45 H 1.09003 * 110.37349 * 274.67175 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6244 0.5355 0.0006 5 8 4.7953 1.2216 0.0004 6 6 5.9988 0.4512 0.0017 7 6 7.1880 1.3769 0.0006 8 8 7.0212 2.5781 -0.0007 9 7 8.4367 0.8698 0.0020 10 6 8.7811 -0.5596 0.0053 11 6 10.3208 -0.6597 0.0342 12 6 10.7475 0.7136 0.6167 13 1 10.6868 0.7123 1.7050 14 6 12.1537 1.0945 0.1493 15 6 12.5877 2.3888 0.8403 16 7 13.9338 2.7538 0.3923 17 6 14.5343 3.8842 0.8788 18 1 14.0153 4.5069 1.5925 19 6 15.8097 4.2304 0.4538 20 7 16.4420 3.4719 -0.4163 21 14 16.6291 5.7721 1.1181 22 1 16.7586 5.6673 2.5937 23 1 17.9773 5.9164 0.5122 24 1 15.8030 6.9581 0.7766 25 6 9.6835 1.6565 0.0017 26 7 3.4764 -0.7622 -0.0044 27 8 2.3084 -1.0750 0.0006 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0311 2.1263 0.0004 32 1 6.0281 -0.1784 -0.8877 33 1 6.0274 -0.1766 0.8922 34 1 8.3955 -1.0358 -0.8962 35 1 8.3617 -1.0398 0.8892 36 1 10.7176 -0.7918 -0.9723 37 1 10.6449 -1.4721 0.6847 38 1 12.1499 1.2428 -0.9306 39 1 12.8501 0.2955 0.4039 40 1 11.8913 3.1877 0.5857 41 1 12.5914 2.2405 1.9201 42 1 14.3999 2.1948 -0.2491 43 1 17.3333 3.7136 -0.7129 44 1 9.5684 2.5500 0.6153 45 1 9.9606 1.9280 -1.0170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754918926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:57 Heat of formation + Delta-G solvation = -20.216755 kcal Electronic energy + Delta-G solvation = -26058.790017 eV Core-core repulsion = 22079.685760 eV Total energy + Delta-G solvation = -3979.104258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.97271 -41.49518 -40.02029 -38.76933 -36.88589 -34.81908 -34.64008 -33.60026 -32.83286 -30.76226 -30.36916 -28.73409 -28.05119 -25.83028 -24.51274 -24.48534 -22.76337 -22.47278 -21.31918 -20.54579 -19.20138 -19.06874 -18.96613 -18.04078 -18.02400 -17.58180 -17.04303 -16.66863 -16.45418 -15.91090 -15.37417 -15.23957 -15.00993 -14.96719 -14.85856 -14.39147 -14.27173 -14.01434 -13.91565 -13.78856 -13.38326 -13.24694 -13.05110 -13.00036 -12.91979 -12.80009 -12.36096 -12.24921 -12.15787 -12.02225 -11.73133 -11.58916 -11.45677 -11.20109 -10.93778 -10.54467 -10.30723 -9.86891 -9.02327 -7.97744 -5.26730 0.41512 1.05988 1.15350 1.25945 1.45316 1.48519 1.54778 2.04142 2.28758 2.54187 3.04850 3.16734 3.35555 3.55589 3.58459 3.73402 3.78774 3.84159 3.88476 3.96015 4.14197 4.24355 4.29292 4.36576 4.46147 4.51914 4.57569 4.73031 4.76209 4.78825 4.80012 4.87365 4.90043 4.92651 5.03976 5.12060 5.24412 5.26647 5.35738 5.43861 5.47181 5.77355 6.24791 6.25172 6.81845 7.17811 7.31268 8.07504 8.31107 9.25425 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033046 B = 0.001726 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.105071 B =16219.263503 C =16911.111344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.253 4.253 4 C 0.189 3.811 5 O -0.283 6.283 6 C 0.060 3.940 7 C 0.525 3.475 8 O -0.573 6.573 9 N -0.611 5.611 10 C 0.090 3.910 11 C -0.118 4.118 12 C -0.085 4.085 13 H 0.091 0.909 14 C -0.099 4.099 15 C 0.147 3.853 16 N -0.747 5.747 17 C -0.253 4.253 18 H 0.071 0.929 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.109 3.891 26 N -0.428 5.428 27 O 0.093 5.907 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.194 0.806 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.011 0.989 41 H 0.019 0.981 42 H 0.375 0.625 43 H 0.253 0.747 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.974 -15.872 0.532 37.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.051 4.051 3 C -0.275 4.275 4 C -0.008 4.008 5 O -0.189 6.189 6 C -0.018 4.018 7 C 0.313 3.687 8 O -0.453 6.453 9 N -0.345 5.345 10 C -0.031 4.031 11 C -0.155 4.155 12 C -0.105 4.105 13 H 0.109 0.891 14 C -0.138 4.138 15 C 0.021 3.979 16 N -0.390 5.390 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.802 3.198 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.013 4.013 26 N -0.156 5.156 27 O 0.033 5.967 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.131 0.869 31 H 0.211 0.789 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -33.231 -15.791 0.629 36.798 hybrid contribution 1.054 1.728 -0.025 2.024 sum -32.177 -14.063 0.604 35.121 Atomic orbital electron populations 1.20688 0.79887 1.06616 1.06010 1.25120 0.98032 0.84044 0.97901 1.22179 0.87428 1.03183 1.14695 1.22428 0.88554 0.88690 1.01093 1.86232 1.11010 1.32156 1.89549 1.22448 0.80498 0.92443 1.06404 1.20046 0.83683 0.88328 0.76610 1.90751 1.85701 1.17510 1.51313 1.48469 1.04121 1.09981 1.71924 1.22495 0.97288 0.79212 1.04127 1.22731 0.92754 0.96652 1.03398 1.22215 0.92132 0.95225 1.00883 0.89097 1.21520 0.95437 0.96666 1.00143 1.20875 0.85441 0.95242 0.96370 1.42570 1.15366 1.28233 1.52830 1.19610 0.98009 1.01241 1.19633 0.91068 1.25567 0.98122 1.02358 1.00489 1.69795 1.14157 1.41029 1.36787 0.85215 0.77274 0.79361 0.77926 1.20284 1.21720 1.20650 1.22374 0.82736 0.95144 1.01056 1.74130 0.99068 1.14056 1.28374 1.84744 1.10079 1.32865 1.69014 0.87268 0.87973 0.86923 0.78907 0.86705 0.86650 0.88812 0.88742 0.89521 0.87146 0.91830 0.90472 0.97071 0.96309 0.79278 0.93875 0.92424 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 10.45 71.24 0.74 0.70 16 2 C 0.01 0.14 7.48 25.00 0.19 0.32 16 3 C -0.25 -3.95 11.11 22.50 0.25 -3.70 16 4 C 0.19 4.18 8.01 85.79 0.69 4.87 16 5 O -0.28 -7.45 9.74 -71.27 -0.69 -8.14 16 6 C 0.06 1.25 5.33 71.24 0.38 1.63 16 7 C 0.53 14.41 7.93 87.66 0.69 15.11 16 8 O -0.57 -21.80 16.75 16.02 0.27 -21.53 16 9 N -0.61 -13.95 3.33 -811.80 -2.70 -16.65 16 10 C 0.09 1.21 6.49 86.73 0.56 1.77 16 11 C -0.12 -1.68 6.42 31.78 0.20 -1.48 16 12 C -0.08 -1.89 3.00 -9.41 -0.03 -1.92 16 13 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 14 C -0.10 -2.92 4.84 30.59 0.15 -2.78 16 15 C 0.15 5.96 6.16 86.38 0.53 6.49 16 16 N -0.75 -39.07 5.60 -343.46 -1.92 -41.00 16 17 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 18 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 21 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 25 C 0.11 2.91 5.86 86.85 0.51 3.42 16 26 N -0.43 -8.88 11.54 -172.60 -1.99 -10.87 16 27 O 0.09 1.52 11.19 71.25 0.80 2.32 16 28 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.21 8.04 -2.39 -0.02 1.19 16 37 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.06 1.92 7.96 -2.39 -0.02 1.90 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.01 0.48 7.75 -2.39 -0.02 0.46 16 41 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.38 20.48 7.67 -92.70 -0.71 19.76 16 43 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 44 H 0.06 1.82 8.04 -2.38 -0.02 1.81 16 45 H 0.07 1.88 7.91 -2.39 -0.02 1.86 16 Total: -1.00 -81.71 381.76 2.53 -79.19 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.28 Total: 20.36 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 6.18 Total: 6.78 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -6.33 Total: -128.16 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: 0.37 Total: -27.35 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -81.71 2.53 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754918926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.969 kcal (2) G-P(sol) polarization free energy of solvation -81.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds